Wall clock time and date at job start Tue Mar 31 2020 19:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47150 * 270.00071 * 3 2 1 5 5 H 1.48500 * 109.47350 * 30.00217 * 3 2 1 6 6 H 1.48503 * 109.47053 * 150.00415 * 3 2 1 7 7 C 1.37879 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99337 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46581 * 184.77183 * 9 7 2 11 11 C 1.46901 * 111.00009 * 284.05790 * 10 9 7 12 12 C 1.50700 * 109.46923 * 170.00193 * 11 10 9 13 13 C 1.33325 * 125.95088 * 90.03126 * 12 11 10 14 14 N 1.32122 * 114.57858 * 179.97438 * 13 12 11 15 15 C 1.29688 * 116.86843 * 359.97438 * 14 13 12 16 16 N 1.38611 * 124.95013 * 180.02562 * 15 14 13 17 17 C 1.47011 * 110.99764 * 123.61445 * 16 15 14 18 18 C 1.53100 * 109.25346 * 177.60923 * 17 16 15 19 19 O 1.43014 * 109.26039 * 56.84726 * 18 17 16 20 20 C 1.43009 * 113.73974 * 301.32922 * 19 18 17 21 21 C 1.47013 * 110.99904 * 359.97438 * 16 15 14 22 22 S 1.70968 * 110.09771 * 359.73209 * 15 14 13 23 23 C 1.46907 * 110.99766 * 160.10813 * 10 9 7 24 24 C 1.52996 * 109.46864 * 287.86425 * 23 10 9 25 25 C 1.53005 * 117.49886 * 245.33196 * 24 23 10 26 26 C 1.53003 * 117.49689 * 176.67507 * 24 23 10 27 27 H 0.97003 * 120.00527 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46908 * 64.77211 * 9 7 2 29 29 H 1.08991 * 109.46913 * 304.76773 * 9 7 2 30 30 H 1.09003 * 109.46972 * 50.00203 * 11 10 9 31 31 H 1.08994 * 109.47272 * 290.00284 * 11 10 9 32 32 H 1.07993 * 122.71188 * 359.97438 * 13 12 11 33 33 H 1.08995 * 109.50787 * 297.53726 * 17 16 15 34 34 H 1.08997 * 109.51090 * 57.67431 * 17 16 15 35 35 H 1.08998 * 109.50722 * 296.90847 * 18 17 16 36 36 H 1.09005 * 109.53645 * 176.80356 * 18 17 16 37 37 H 1.09007 * 109.50702 * 298.73566 * 20 19 18 38 38 H 1.09003 * 109.54438 * 178.63041 * 20 19 18 39 39 H 1.08999 * 109.50958 * 302.32962 * 21 16 15 40 40 H 1.09000 * 109.50454 * 62.46096 * 21 16 15 41 41 H 1.09000 * 109.47031 * 47.86390 * 23 10 9 42 42 H 1.08999 * 109.46723 * 167.86582 * 23 10 9 43 43 H 1.09002 * 115.55238 * 31.00544 * 24 23 10 44 44 H 1.09001 * 117.49400 * 0.02562 * 25 24 23 45 45 H 1.08994 * 117.49748 * 145.01923 * 25 24 23 46 46 H 1.09000 * 117.49802 * 214.97587 * 26 24 23 47 47 H 1.08996 * 117.49609 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2016 -3.6133 0.1141 11 6 2.8904 -3.8509 -1.1615 12 6 4.0213 -4.8239 -0.9480 13 6 3.9408 -6.1511 -1.0453 14 7 5.0741 -6.7890 -0.8121 15 6 6.1077 -6.0609 -0.5229 16 7 7.3743 -6.5531 -0.2498 17 6 8.3738 -5.9659 -1.1539 18 6 9.7628 -6.4900 -0.7797 19 8 9.7579 -7.9192 -0.8328 20 6 8.7965 -8.5243 0.0360 21 6 7.3978 -8.0209 -0.3299 22 16 5.6820 -4.4051 -0.5355 23 6 1.5299 -4.8321 0.5846 24 6 1.1744 -4.6793 2.0649 25 6 1.8739 -5.6086 3.0589 26 6 0.3948 -5.8182 2.7253 27 1 -0.4851 0.8400 0.0004 28 1 0.6897 -2.5945 -0.9300 29 1 0.5622 -2.5209 0.8439 30 1 3.2878 -2.9094 -1.5407 31 1 2.1863 -4.2649 -1.8831 32 1 3.0234 -6.6635 -1.2946 33 1 8.1440 -6.2462 -2.1819 34 1 8.3569 -4.8802 -1.0595 35 1 10.0151 -6.1641 0.2294 36 1 10.5003 -6.1022 -1.4824 37 1 9.0206 -8.2576 1.0689 38 1 8.8345 -9.6078 -0.0765 39 1 6.6682 -8.4351 0.3660 40 1 7.1523 -8.3339 -1.3447 41 1 0.6194 -4.9913 0.0069 42 1 2.1952 -5.6859 0.4570 43 1 0.9563 -3.6632 2.3936 44 1 2.5877 -6.3284 2.6583 45 1 2.1157 -5.2039 4.0417 46 1 -0.3359 -5.5513 3.4888 47 1 0.1348 -6.6759 2.1051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119086687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:53 Heat of formation + Delta-G solvation = 46.742911 kcal Electronic energy + Delta-G solvation = -27010.488060 eV Core-core repulsion = 23321.502643 eV Total energy + Delta-G solvation = -3688.985417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48704 -39.13354 -37.76312 -36.11643 -35.35816 -32.64242 -31.64324 -30.55858 -28.21704 -27.62813 -25.98883 -24.55882 -24.14380 -23.09136 -22.05638 -21.45929 -21.02696 -19.58151 -19.34748 -18.08478 -16.77911 -16.50855 -16.37575 -15.60290 -15.44583 -15.34739 -15.18722 -15.07965 -14.80351 -14.39265 -14.22778 -13.76895 -13.66587 -13.26460 -12.80188 -12.72598 -12.34985 -12.08455 -11.88154 -11.79630 -11.67691 -11.32012 -11.22501 -11.09328 -10.91600 -10.82185 -10.68079 -10.53271 -10.34844 -10.03213 -9.80709 -9.74795 -9.52122 -9.48523 -9.25796 -8.96830 -8.45785 -8.05864 -7.32973 -6.05567 -4.07142 0.91536 1.31667 1.99481 2.87641 3.29303 3.35297 3.36256 3.40447 3.51166 4.18544 4.34551 4.40736 4.54463 4.67201 4.76679 4.81620 4.85763 4.95769 5.14030 5.17933 5.28380 5.29401 5.31642 5.33911 5.40709 5.52029 5.55447 5.63221 5.65435 5.90238 5.92568 5.95910 6.00897 6.11670 6.22017 6.24049 6.25307 6.37354 6.42305 6.69638 6.73728 6.79948 7.15303 7.25836 7.76778 7.85311 8.04520 8.11900 8.47327 9.00001 9.57245 11.04769 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.003194 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.735330 B = 8765.583947 C =10355.571900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.527 5.527 11 C 0.135 3.865 12 C -0.195 4.195 13 C 0.038 3.962 14 N -0.510 5.510 15 C 0.188 3.812 16 N -0.446 5.446 17 C 0.016 3.984 18 C 0.066 3.934 19 O -0.384 6.384 20 C 0.061 3.939 21 C 0.033 3.967 22 S 0.174 5.826 23 C 0.081 3.919 24 C -0.128 4.128 25 C -0.178 4.178 26 C -0.188 4.188 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.169 0.831 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.216 -14.977 -0.864 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.251 5.251 11 C 0.004 3.996 12 C -0.318 4.318 13 C -0.113 4.113 14 N -0.230 5.230 15 C -0.181 4.181 16 N -0.168 5.168 17 C -0.112 4.112 18 C -0.011 4.011 19 O -0.302 6.302 20 C -0.016 4.016 21 C -0.097 4.097 22 S 0.427 5.573 23 C -0.047 4.047 24 C -0.147 4.147 25 C -0.215 4.215 26 C -0.226 4.226 27 H 0.071 0.929 28 H 0.008 0.992 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.186 0.814 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.318 -14.335 0.010 20.979 hybrid contribution -1.591 0.192 -1.116 1.953 sum 13.727 -14.142 -1.106 19.740 Atomic orbital electron populations 1.69947 1.06035 1.26804 1.50981 1.24967 0.94827 0.99233 0.95452 0.86545 0.79914 0.83233 0.78046 1.20744 1.21273 1.19721 1.21139 0.93461 0.89844 1.49996 0.91982 1.19814 0.90112 0.87061 0.96257 1.62107 1.31879 1.05174 1.25974 1.20368 0.90741 0.96396 0.92051 1.25950 0.98558 0.98247 1.09053 1.21317 0.96143 0.90306 1.03565 1.66716 0.99339 1.38715 1.18240 1.24894 0.94222 0.95786 1.03164 1.59365 1.00406 1.08521 1.48542 1.23112 0.92271 1.00868 0.94946 1.22685 0.94856 0.81096 1.02490 1.88000 1.58270 1.19231 1.64738 1.22787 0.86438 0.98259 0.94107 1.22732 0.98672 0.85136 1.03112 1.83990 1.03859 1.04010 1.65438 1.21665 0.96338 0.93706 0.92999 1.22296 1.02366 0.96207 0.93802 1.22901 0.94555 1.03495 1.00543 1.22927 0.94602 1.01151 1.03927 0.92908 0.99158 0.94198 0.88652 0.93696 0.81404 0.92265 0.88653 0.91687 0.87605 0.91978 0.87808 0.88450 0.92154 0.95390 0.91791 0.86793 0.89589 0.89404 0.89226 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.66 8.62 -34.44 -0.30 -13.96 16 8 H 0.06 1.67 7.67 -52.49 -0.40 1.27 16 9 C 0.19 4.76 4.55 -4.97 -0.02 4.74 16 10 N -0.53 -10.81 4.37 -237.52 -1.04 -11.84 16 11 C 0.13 2.45 5.32 -4.98 -0.03 2.42 16 12 C -0.20 -3.13 5.54 -36.02 -0.20 -3.33 16 13 C 0.04 0.57 9.60 -19.14 -0.18 0.39 16 14 N -0.51 -7.72 9.52 -15.21 -0.14 -7.86 16 15 C 0.19 2.65 6.74 -87.68 -0.59 2.06 16 16 N -0.45 -5.32 4.79 -175.08 -0.84 -6.15 16 17 C 0.02 0.15 5.48 -3.71 -0.02 0.13 16 18 C 0.07 0.53 7.01 37.21 0.26 0.79 16 19 O -0.38 -3.75 10.83 -35.23 -0.38 -4.13 16 20 C 0.06 0.52 7.01 37.21 0.26 0.78 16 21 C 0.03 0.35 4.97 -3.71 -0.02 0.33 16 22 S 0.17 2.56 22.34 -107.50 -2.40 0.16 16 23 C 0.08 1.45 5.11 -3.82 -0.02 1.44 16 24 C -0.13 -2.24 5.58 -90.62 -0.51 -2.75 16 25 C -0.18 -2.69 10.18 -26.69 -0.27 -2.96 16 26 C -0.19 -2.72 10.25 -26.69 -0.27 -2.99 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H -0.01 -0.25 8.00 -51.93 -0.42 -0.66 16 29 H 0.04 1.06 6.46 -51.93 -0.34 0.73 16 30 H 0.10 1.86 7.34 -51.93 -0.38 1.48 16 31 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 32 H 0.17 2.27 7.85 -52.49 -0.41 1.86 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.85 7.47 -51.93 -0.39 0.46 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 1.08 8.01 -51.93 -0.42 0.66 16 40 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 41 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 42 H 0.06 1.06 5.19 -51.93 -0.27 0.80 16 43 H 0.11 2.29 6.88 -51.93 -0.36 1.94 16 44 H 0.09 1.29 8.04 -51.93 -0.42 0.87 16 45 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -30.16 388.04 -12.82 -42.98 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.57 Total: 1.59 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.01 Total: -11.46 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -1.29 Total: -51.15 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.38 Total: -4.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.40 Total: 0.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.16 -12.82 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119086687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.724 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds