Wall clock time and date at job start Tue Mar 31 2020 20:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29515 * 121.53149 * 2 1 4 4 S 1.69484 * 107.84563 * 180.23156 * 3 2 1 5 5 C 1.72020 * 96.02548 * 359.72664 * 4 3 2 6 6 C 1.37904 * 105.36416 * 359.97438 * 5 4 3 7 7 C 1.47337 * 123.08357 * 180.02562 * 6 5 4 8 8 O 1.21622 * 119.99812 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00374 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00076 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47160 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.69616 * 60.29891 * 11 10 9 13 13 C 1.53189 * 109.58615 * 180.65755 * 11 10 9 14 14 C 1.53038 * 109.30944 * 174.42525 * 13 11 10 15 15 C 1.53040 * 109.53898 * 298.62857 * 14 13 11 16 16 C 1.52993 * 109.49898 * 181.31739 * 15 14 13 17 17 C 1.53001 * 109.49858 * 301.38915 * 15 14 13 18 18 C 1.52758 * 109.37864 * 61.24394 * 15 14 13 19 19 N 1.46921 * 109.58440 * 299.94714 * 11 10 9 20 20 C 1.36935 * 120.63539 * 6.58031 * 19 11 10 21 21 H 1.08001 * 119.99907 * 328.05936 * 20 19 11 22 22 C 1.38813 * 120.00459 * 148.06025 * 20 19 11 23 23 N 1.31622 * 119.99558 * 337.50645 * 22 20 19 24 24 Si 1.86798 * 120.00324 * 157.22509 * 22 20 19 25 25 H 1.48504 * 109.47009 * 270.28185 * 24 22 20 26 26 H 1.48501 * 109.46923 * 30.27522 * 24 22 20 27 27 H 1.48495 * 109.46968 * 150.27642 * 24 22 20 28 28 H 1.08999 * 109.47305 * 270.27131 * 1 2 3 29 29 H 1.09000 * 109.47086 * 30.26946 * 1 2 3 30 30 H 1.09000 * 109.47096 * 150.27205 * 1 2 3 31 31 H 1.07996 * 127.31919 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00023 * 0.02562 * 9 7 6 33 33 H 1.08997 * 109.46595 * 60.00139 * 10 9 7 34 34 H 1.08998 * 109.47194 * 300.00380 * 10 9 7 35 35 H 1.09007 * 109.49484 * 294.37123 * 13 11 10 36 36 H 1.08998 * 109.50009 * 54.43843 * 13 11 10 37 37 H 1.08994 * 109.46213 * 58.65374 * 14 13 11 38 38 H 1.09006 * 109.45707 * 178.62951 * 14 13 11 39 39 H 1.09003 * 109.46895 * 60.00298 * 16 15 14 40 40 H 1.09000 * 109.47389 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.47751 * 300.00582 * 16 15 14 42 42 H 1.08998 * 109.47414 * 59.99636 * 17 15 14 43 43 H 1.09002 * 109.47131 * 180.02562 * 17 15 14 44 44 H 1.09004 * 109.46520 * 299.99338 * 17 15 14 45 45 H 1.09001 * 109.51227 * 185.70804 * 18 15 14 46 46 H 1.08994 * 109.43664 * 65.42417 * 18 15 14 47 47 H 0.97000 * 120.00202 * 353.78565 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0065 5 6 3.6018 -1.0019 -0.0012 6 6 2.2352 -1.1868 0.0061 7 6 1.6037 -2.5179 0.0131 8 8 0.3914 -2.6159 0.0190 9 7 2.3693 -3.6271 0.0131 10 6 1.7414 -4.9507 0.0206 11 6 2.8260 -6.0298 0.0195 12 1 3.4491 -5.9253 0.9078 13 6 2.1721 -7.4151 0.0108 14 6 3.2566 -8.4857 -0.1305 15 6 3.9967 -8.2927 -1.4561 16 6 5.0585 -9.3830 -1.6116 17 6 3.0009 -8.3805 -2.6144 18 6 4.6673 -6.9202 -1.4670 19 7 3.6571 -5.8915 -1.1841 20 6 3.4894 -4.8273 -2.0294 21 1 2.5112 -4.3876 -2.1565 22 6 4.5767 -4.3136 -2.7228 23 7 5.7978 -4.5159 -2.2752 24 14 4.3073 -3.3419 -4.2952 25 1 4.3126 -4.2677 -5.4563 26 1 2.9995 -2.6418 -4.2265 27 1 5.3954 -2.3438 -4.4528 28 1 -0.3634 0.0049 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8924 -0.5096 31 1 4.3657 -1.7653 -0.0024 32 1 3.3361 -3.5490 0.0088 33 1 1.1171 -5.0616 -0.8660 34 1 1.1257 -5.0557 0.9139 35 1 1.6300 -7.5674 0.9442 36 1 1.4794 -7.4852 -0.8278 37 1 3.9624 -8.3989 0.6955 38 1 2.7961 -9.4735 -0.1125 39 1 4.5784 -10.3616 -1.6029 40 1 5.5851 -9.2455 -2.5560 41 1 5.7683 -9.3194 -0.7868 42 1 2.2453 -7.6028 -2.5038 43 1 3.5286 -8.2434 -3.5583 44 1 2.5197 -9.3585 -2.6064 45 1 5.1092 -6.7387 -2.4467 46 1 5.4436 -6.8898 -0.7025 47 1 5.9347 -4.9448 -1.4160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089630539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:42 Heat of formation + Delta-G solvation = 13.418340 kcal Electronic energy + Delta-G solvation = -28743.967971 eV Core-core repulsion = 25053.537492 eV Total energy + Delta-G solvation = -3690.430479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.02413 -38.97309 -37.67582 -35.23583 -33.57436 -32.63178 -31.17352 -29.90015 -29.34366 -27.53153 -26.76452 -25.52083 -24.47473 -23.26538 -22.25015 -20.72410 -20.31307 -19.14937 -18.19848 -17.98887 -17.09205 -16.42560 -15.61980 -15.13684 -14.86786 -14.48415 -14.35709 -14.02206 -13.72867 -13.68659 -13.49803 -13.44757 -13.12271 -13.00499 -12.59340 -12.21940 -12.19829 -12.10137 -11.92795 -11.56765 -11.46766 -11.32510 -11.18249 -10.85248 -10.84262 -10.73587 -10.56854 -10.34882 -10.17892 -10.04827 -9.96095 -9.67554 -9.56909 -9.36061 -9.15994 -8.66649 -8.52426 -8.24970 -6.96236 -6.13729 -3.40904 0.62959 1.52879 1.89433 2.07731 3.41081 3.44491 3.58481 3.61766 3.78391 4.44172 4.68690 4.97520 5.15571 5.18613 5.28723 5.32677 5.34868 5.47162 5.51582 5.58099 5.61973 5.72685 5.79317 5.85903 5.91581 5.96453 6.03654 6.08758 6.16615 6.20430 6.30125 6.32043 6.34117 6.34800 6.38595 6.49918 6.68852 6.76301 6.80460 6.82723 6.88290 7.06060 7.11213 7.15725 7.97443 8.11826 8.46675 8.72423 8.96267 9.69534 10.16804 11.08998 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.004274 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.976237 B = 6549.499798 C = 7574.746213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 N -0.479 5.479 4 S 0.272 5.728 5 C -0.156 4.156 6 C -0.208 4.208 7 C 0.578 3.422 8 O -0.554 6.554 9 N -0.681 5.681 10 C 0.139 3.861 11 C 0.161 3.839 12 H 0.029 0.971 13 C -0.130 4.130 14 C -0.096 4.096 15 C -0.088 4.088 16 C -0.136 4.136 17 C -0.125 4.125 18 C 0.167 3.833 19 N -0.592 5.592 20 C -0.343 4.343 21 H 0.061 0.939 22 C -0.014 4.014 23 N -0.913 5.913 24 Si 1.050 2.950 25 H -0.292 1.292 26 H -0.292 1.292 27 H -0.289 1.289 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.195 0.805 32 H 0.412 0.588 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.033 0.967 45 H 0.076 0.924 46 H 0.015 0.985 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.490 -0.300 5.751 6.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.013 4.013 3 N -0.300 5.300 4 S 0.427 5.573 5 C -0.305 4.305 6 C -0.229 4.229 7 C 0.362 3.638 8 O -0.436 6.436 9 N -0.331 5.331 10 C 0.015 3.985 11 C 0.055 3.945 12 H 0.047 0.953 13 C -0.170 4.170 14 C -0.133 4.133 15 C -0.090 4.090 16 C -0.194 4.194 17 C -0.183 4.183 18 C 0.041 3.959 19 N -0.316 5.316 20 C -0.472 4.472 21 H 0.079 0.921 22 C -0.217 4.217 23 N -0.553 5.553 24 Si 0.880 3.120 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.215 1.215 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.212 0.788 32 H 0.249 0.751 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.094 0.906 46 H 0.033 0.967 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.659 2.483 4.477 5.769 hybrid contribution -0.873 -2.550 1.073 2.900 sum -3.532 -0.066 5.550 6.578 Atomic orbital electron populations 1.20888 0.85658 1.04979 1.03864 1.21432 0.99409 0.86831 0.93619 1.76429 1.00308 1.26282 1.26932 1.83940 1.10704 0.96521 1.66124 1.27538 0.99701 1.04225 0.99059 1.20470 0.92121 0.96440 1.13830 1.17222 0.86378 0.83087 0.77118 1.90648 1.13480 1.86800 1.52672 1.45813 1.11011 1.04803 1.71432 1.21269 0.95258 0.81187 1.00824 1.20729 0.91408 0.91751 0.90651 0.95310 1.21997 0.98136 0.96027 1.00818 1.21408 0.97348 0.97424 0.97157 1.21032 0.95731 0.97439 0.94800 1.21789 0.98543 0.97749 1.01289 1.21713 0.99275 0.99945 0.97318 1.20890 0.90053 0.84897 1.00013 1.44108 1.41344 1.23577 1.22580 1.19990 0.95182 1.09467 1.22604 0.92125 1.25666 0.92814 0.99329 1.03929 1.70771 1.21551 1.41719 1.21248 0.83706 0.75055 0.76491 0.76734 1.21924 1.21787 1.21515 0.90159 0.91246 0.86978 0.78833 0.75056 0.91336 0.92539 0.92976 0.91473 0.92951 0.93354 0.93647 0.92942 0.93307 0.91446 0.93541 0.94806 0.90608 0.96714 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.51 36.01 0.34 -0.98 16 2 C 0.16 2.69 6.75 -83.20 -0.56 2.13 16 3 N -0.48 -7.69 11.97 32.50 0.39 -7.31 16 4 S 0.27 3.84 23.69 -107.50 -2.55 1.30 16 5 C -0.16 -2.39 10.79 30.61 0.33 -2.06 16 6 C -0.21 -3.51 5.86 -105.95 -0.62 -4.13 16 7 C 0.58 10.65 7.78 -12.56 -0.10 10.55 16 8 O -0.55 -11.01 13.75 5.26 0.07 -10.93 16 9 N -0.68 -12.32 3.82 -61.41 -0.23 -12.56 16 10 C 0.14 2.44 4.43 -4.04 -0.02 2.43 16 11 C 0.16 2.84 3.02 -67.60 -0.20 2.64 16 12 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 13 C -0.13 -2.01 5.03 -26.61 -0.13 -2.14 16 14 C -0.10 -1.44 4.71 -26.69 -0.13 -1.57 16 15 C -0.09 -1.47 0.77 -154.61 -0.12 -1.59 16 16 C -0.14 -2.00 8.48 37.15 0.32 -1.68 16 17 C -0.13 -2.12 7.98 37.16 0.30 -1.82 16 18 C 0.17 3.38 3.35 -3.93 -0.01 3.37 16 19 N -0.59 -12.14 2.23 -165.04 -0.37 -12.51 16 20 C -0.34 -7.93 6.82 -15.06 -0.10 -8.04 16 21 H 0.06 1.50 5.96 -52.49 -0.31 1.18 16 22 C -0.01 -0.34 4.72 -17.43 -0.08 -0.43 16 23 N -0.91 -23.76 12.54 55.49 0.70 -23.06 16 24 Si 1.05 23.82 29.98 -169.99 -5.10 18.73 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.11 1.78 5.64 -51.93 -0.29 1.49 16 31 H 0.19 2.85 7.20 -52.49 -0.38 2.47 16 32 H 0.41 7.64 5.95 -40.82 -0.24 7.40 16 33 H 0.07 1.34 7.43 -51.93 -0.39 0.96 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.25 5.98 -51.93 -0.31 0.94 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.79 6.56 -51.93 -0.34 1.45 16 46 H 0.01 0.31 7.83 -51.93 -0.41 -0.09 16 47 H 0.27 7.01 6.72 -40.82 -0.27 6.73 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -26.20 372.60 -9.41 -35.61 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.14 Total: 8.44 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.79 Total: -3.32 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.48 Total: -55.43 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.10 Total: 18.73 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.55 Total: 1.30 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -26.20 -9.41 -35.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089630539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.028 kcal (2) G-P(sol) polarization free energy of solvation -26.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds