Wall clock time and date at job start Tue Mar 31 2020 19:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 119.99691 * 2 1 4 4 H 1.48495 * 109.46851 * 269.99717 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99846 * 3 2 1 6 6 H 1.48504 * 109.46845 * 149.99993 * 3 2 1 7 7 C 1.38810 * 120.00534 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00296 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65168 * 347.73936 * 9 7 2 11 11 C 1.54904 * 104.83408 * 204.16166 * 10 9 7 12 12 C 1.55158 * 101.58196 * 322.99057 * 11 10 9 13 13 C 1.47024 * 125.64631 * 167.77710 * 9 7 2 14 14 H 1.08996 * 109.88368 * 59.49095 * 13 9 7 15 15 C 1.53003 * 109.88640 * 298.47952 * 13 9 7 16 16 C 1.52995 * 109.47455 * 175.33744 * 15 13 9 17 17 C 1.52991 * 109.47244 * 184.98110 * 16 15 13 18 18 N 1.46502 * 109.47193 * 180.02562 * 17 16 15 19 19 C 1.34780 * 119.99986 * 179.97438 * 18 17 16 20 20 O 1.21277 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.50696 * 119.99924 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.47215 * 179.97438 * 21 19 18 23 23 C 1.50701 * 109.47240 * 179.97438 * 22 21 19 24 24 N 1.29025 * 124.91336 * 90.00313 * 23 22 21 25 25 C 1.31788 * 117.12425 * 179.97438 * 24 23 22 26 26 C 1.33642 * 114.49688 * 359.97438 * 25 24 23 27 27 S 1.70979 * 124.91725 * 269.69519 * 23 22 21 28 28 H 0.97000 * 120.00612 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.36535 * 85.31967 * 10 9 7 30 30 H 1.09003 * 110.45818 * 323.05002 * 10 9 7 31 31 H 1.09000 * 111.00574 * 81.06505 * 11 10 9 32 32 H 1.09004 * 111.00705 * 204.91296 * 11 10 9 33 33 H 1.08997 * 110.72047 * 153.87056 * 12 11 10 34 34 H 1.09005 * 110.71779 * 277.13547 * 12 11 10 35 35 H 1.09001 * 109.46865 * 295.33761 * 15 13 9 36 36 H 1.09004 * 109.46730 * 55.33475 * 15 13 9 37 37 H 1.09001 * 109.47121 * 304.98531 * 16 15 13 38 38 H 1.09002 * 109.46956 * 64.98089 * 16 15 13 39 39 H 1.08998 * 109.47227 * 299.99736 * 17 16 15 40 40 H 1.09002 * 109.47162 * 60.00104 * 17 16 15 41 41 H 0.97000 * 119.99771 * 359.97438 * 18 17 16 42 42 H 1.09007 * 109.46926 * 299.99681 * 21 19 18 43 43 H 1.08997 * 109.47499 * 59.99792 * 21 19 18 44 44 H 1.08995 * 109.47095 * 300.00477 * 22 21 19 45 45 H 1.09002 * 109.46989 * 60.00061 * 22 21 19 46 46 H 1.08001 * 122.74633 * 180.02562 * 25 24 23 47 47 H 1.08000 * 126.03278 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1177 -2.5467 0.2567 11 6 -0.2742 -4.0047 0.7559 12 6 0.7699 -4.7474 -0.1191 13 6 1.9084 -3.7140 -0.2507 14 1 2.6857 -3.9233 0.4842 15 6 2.4995 -3.7630 -1.6611 16 6 3.2046 -5.1042 -1.8724 17 6 3.9010 -5.1052 -3.2346 18 7 4.5757 -6.3898 -3.4372 19 6 5.2591 -6.6198 -4.5758 20 8 5.3159 -5.7633 -5.4325 21 6 5.9526 -7.9414 -4.7844 22 6 6.6481 -7.9429 -6.1472 23 6 7.3422 -9.2642 -6.3556 24 7 6.8060 -10.3015 -6.9045 25 6 7.5555 -11.3804 -7.0100 26 6 8.7928 -11.2454 -6.5235 27 16 8.9564 -9.6035 -5.9055 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6840 -2.3977 -0.6627 30 1 -0.4485 -1.8457 1.0230 31 1 -0.0246 -4.0843 1.8140 32 1 -1.2805 -4.3774 0.5645 33 1 1.1227 -5.6483 0.3827 34 1 0.3523 -4.9879 -1.0969 35 1 1.7001 -3.6533 -2.3940 36 1 3.2175 -2.9518 -1.7824 37 1 3.9444 -5.2536 -1.0859 38 1 2.4709 -5.9096 -1.8388 39 1 3.1612 -4.9559 -4.0210 40 1 4.6347 -4.2998 -3.2682 41 1 4.5305 -7.0747 -2.7518 42 1 6.6927 -8.0914 -3.9983 43 1 5.2185 -8.7463 -4.7508 44 1 5.9079 -7.7929 -6.9331 45 1 7.3823 -7.1379 -6.1813 46 1 7.1991 -12.2981 -7.4541 47 1 9.5582 -12.0072 -6.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663124096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:16 Heat of formation + Delta-G solvation = 11.394241 kcal Electronic energy + Delta-G solvation = -25449.850545 eV Core-core repulsion = 21759.332295 eV Total energy + Delta-G solvation = -3690.518250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22533 -39.69951 -37.84265 -35.63473 -34.23969 -32.96249 -32.14337 -30.21074 -29.37353 -28.20613 -26.49014 -24.80485 -24.13399 -23.18893 -21.52271 -20.52976 -20.27352 -20.07458 -19.13492 -18.45438 -17.18452 -16.72487 -16.15607 -15.98995 -15.85932 -15.19716 -14.93112 -14.88724 -14.34800 -14.19048 -14.02775 -13.74988 -13.37781 -13.05041 -12.76895 -12.54460 -12.27353 -12.03317 -11.93934 -11.89142 -11.70340 -11.53768 -11.43760 -11.01321 -10.81481 -10.71662 -10.55307 -10.12556 -10.06524 -10.01365 -9.96512 -9.83876 -9.75218 -9.58598 -9.57931 -9.31308 -9.13563 -8.55511 -6.75526 -5.70105 -3.05130 0.25431 0.92195 1.31806 2.39083 2.49152 3.03337 3.41553 3.46914 3.48227 3.74478 4.37489 4.51555 4.58378 4.66617 4.76154 4.86901 5.03571 5.04247 5.13467 5.18584 5.39258 5.41364 5.47265 5.61737 5.62144 5.63142 5.74614 5.75291 5.87376 5.97831 6.05252 6.12480 6.28652 6.36577 6.38834 6.44695 6.58994 6.72143 6.74815 6.97371 7.19161 7.30883 7.36416 7.59762 7.65414 7.84713 8.08017 8.33313 9.24322 9.86057 10.54605 11.41450 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.001653 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.443169 B =16932.913768 C =17808.546351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.163 3.837 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.117 3.883 18 N -0.728 5.728 19 C 0.512 3.488 20 O -0.540 6.540 21 C -0.135 4.135 22 C -0.030 4.030 23 C 0.054 3.946 24 N -0.474 5.474 25 C 0.039 3.961 26 C -0.264 4.264 27 S 0.123 5.877 28 H 0.252 0.748 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.176 0.824 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.904 -24.070 -8.915 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.006 4.006 18 N -0.380 5.380 19 C 0.297 3.703 20 O -0.417 6.417 21 C -0.176 4.176 22 C -0.071 4.071 23 C -0.224 4.224 24 N -0.188 5.188 25 C -0.112 4.112 26 C -0.403 4.403 27 S 0.376 5.624 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.234 0.766 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.193 0.807 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 15.134 -22.582 -9.230 28.709 hybrid contribution 0.174 -0.422 -0.159 0.483 sum 15.308 -23.005 -9.389 29.184 Atomic orbital electron populations 1.69931 1.04949 1.25021 1.56731 1.24860 0.95668 0.97718 1.02114 0.86170 0.78662 0.83644 0.77609 1.21562 1.21738 1.20695 1.18974 0.90341 0.82384 1.43623 0.90763 1.44553 1.04919 1.00822 1.81799 1.21448 0.84934 0.90339 0.98664 1.23016 0.97333 0.99781 0.98789 1.22589 0.97082 0.97091 0.99459 1.20917 0.93718 0.86882 0.92988 0.95208 1.22029 0.99829 0.94490 0.99898 1.21829 0.99514 1.00197 0.94997 1.21523 0.96356 0.84445 0.98263 1.46112 1.53493 1.18630 1.19720 1.20461 0.78928 0.89004 0.81859 1.90737 1.61189 1.46845 1.42934 1.21636 1.01172 0.96564 0.98254 1.20005 1.00094 0.88911 0.98090 1.27162 0.95281 0.99438 1.00510 1.66308 1.36648 0.99295 1.16557 1.21859 0.90081 0.97783 1.01452 1.27126 1.02842 1.00680 1.09625 1.84156 1.14284 1.07045 1.56870 0.93767 0.96089 0.90797 0.92506 0.92586 0.92673 0.92067 0.92233 0.91649 0.91760 0.91720 0.91431 0.91338 0.76609 0.88604 0.88132 0.87719 0.88599 0.80682 0.80544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.48 55.49 0.58 -26.40 16 2 C -0.01 -0.20 5.47 -17.44 -0.10 -0.30 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.17 9.73 -15.06 -0.15 -6.31 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.91 3.13 -162.58 -0.51 -15.42 16 10 C 0.17 4.14 5.45 -2.53 -0.01 4.13 16 11 C -0.15 -2.82 7.08 -24.58 -0.17 -3.00 16 12 C -0.12 -2.09 5.69 -24.90 -0.14 -2.23 16 13 C 0.16 3.20 3.16 -66.95 -0.21 2.99 16 14 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 15 C -0.12 -2.13 4.71 -26.73 -0.13 -2.25 16 16 C -0.13 -1.59 5.10 -26.74 -0.14 -1.73 16 17 C 0.12 1.47 5.67 -4.04 -0.02 1.44 16 18 N -0.73 -7.22 5.56 -60.30 -0.34 -7.56 16 19 C 0.51 5.60 7.83 -10.99 -0.09 5.52 16 20 O -0.54 -8.20 15.98 5.56 0.09 -8.11 16 21 C -0.13 -0.99 5.68 -27.88 -0.16 -1.15 16 22 C -0.03 -0.25 5.09 -27.88 -0.14 -0.39 16 23 C 0.05 0.45 6.64 -13.46 -0.09 0.36 16 24 N -0.47 -4.54 10.54 -11.86 -0.13 -4.66 16 25 C 0.04 0.29 11.35 -19.18 -0.22 0.07 16 26 C -0.26 -1.56 11.37 29.12 0.33 -1.23 16 27 S 0.12 0.80 23.18 -107.50 -2.49 -1.69 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.02 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.07 2.00 6.75 -51.93 -0.35 1.65 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.99 7.78 -51.93 -0.40 0.58 16 35 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 36 H 0.06 1.26 7.85 -51.93 -0.41 0.85 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.74 7.63 -51.93 -0.40 0.34 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.40 2.77 8.47 -40.82 -0.35 2.43 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 45 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 46 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -33.47 396.14 -11.06 -44.53 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.78 Total: 0.31 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.43 Total: -4.09 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.39 Total: -54.04 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.47 -11.06 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663124096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.920 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds