Wall clock time and date at job start Tue Mar 31 2020 19:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48504 * 109.46847 * 270.00012 * 3 2 1 5 5 H 1.48498 * 109.47464 * 29.99710 * 3 2 1 6 6 H 1.48498 * 109.46980 * 149.99957 * 3 2 1 7 7 C 1.38804 * 119.99427 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00662 * 0.02562 * 7 2 1 10 10 C 1.47749 * 125.81790 * 14.06255 * 9 7 2 11 11 C 1.54911 * 104.83777 * 155.83286 * 10 9 7 12 12 C 1.55160 * 101.58274 * 37.09450 * 11 10 9 13 13 C 1.47020 * 125.65110 * 194.15823 * 9 7 2 14 14 H 1.08998 * 109.88293 * 300.59718 * 13 9 7 15 15 C 1.52998 * 109.88215 * 61.60730 * 13 9 7 16 16 C 1.53000 * 109.47437 * 183.32919 * 15 13 9 17 17 C 1.52998 * 109.47494 * 174.92552 * 16 15 13 18 18 N 1.46497 * 109.47254 * 180.02562 * 17 16 15 19 19 C 1.34777 * 120.00117 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99617 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00126 * 179.72067 * 19 18 17 22 22 C 1.52999 * 109.47206 * 180.27502 * 21 19 18 23 23 C 1.50699 * 109.47185 * 180.02562 * 22 21 19 24 24 N 1.29020 * 124.91973 * 89.99658 * 23 22 21 25 25 C 1.31786 * 117.13031 * 179.97438 * 24 23 22 26 26 C 1.33641 * 114.49417 * 359.97438 * 25 24 23 27 27 S 1.70982 * 124.91164 * 269.69785 * 23 22 21 28 28 H 0.97000 * 119.99293 * 359.97438 * 1 2 3 29 29 H 1.09004 * 110.28917 * 37.03399 * 10 9 7 30 30 H 1.08991 * 110.43784 * 274.71085 * 10 9 7 31 31 H 1.09006 * 111.00606 * 279.01835 * 11 10 9 32 32 H 1.09004 * 111.03972 * 155.18444 * 11 10 9 33 33 H 1.09001 * 110.71680 * 206.13061 * 12 11 10 34 34 H 1.09000 * 110.71712 * 82.85980 * 12 11 10 35 35 H 1.08998 * 109.47366 * 63.33142 * 15 13 9 36 36 H 1.09000 * 109.47219 * 303.33425 * 15 13 9 37 37 H 1.09001 * 109.46927 * 54.92071 * 16 15 13 38 38 H 1.08997 * 109.46992 * 294.92720 * 16 15 13 39 39 H 1.09001 * 109.47426 * 59.99825 * 17 16 15 40 40 H 1.09005 * 109.46929 * 299.99862 * 17 16 15 41 41 H 0.96998 * 119.99991 * 359.97438 * 18 17 16 42 42 H 1.08995 * 109.47333 * 300.27546 * 21 19 18 43 43 H 1.09001 * 109.46967 * 60.27686 * 21 19 18 44 44 H 1.09004 * 109.46799 * 300.00027 * 22 21 19 45 45 H 1.08994 * 109.47095 * 59.99873 * 22 21 19 46 46 H 1.07995 * 122.75533 * 180.02562 * 25 24 23 47 47 H 1.07998 * 126.03858 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1132 -2.5559 -0.2911 11 6 -0.2525 -4.0227 -0.7694 12 6 0.7679 -4.7476 0.1475 13 6 1.9001 -3.7093 0.2933 14 1 2.6996 -3.9308 -0.4138 15 6 2.4477 -3.7336 1.7217 16 6 3.1168 -5.0834 1.9885 17 6 3.7742 -5.0627 3.3699 18 7 4.4154 -6.3549 3.6251 19 6 5.0612 -6.5687 4.7886 20 8 5.1119 -5.6911 5.6241 21 6 5.7154 -7.9002 5.0537 22 6 6.3675 -7.8815 6.4376 23 6 7.0223 -9.2127 6.7024 24 7 8.2422 -9.5082 6.4038 25 6 8.6578 -10.7217 6.7060 26 6 7.7373 -11.4926 7.2929 27 16 6.2581 -10.5478 7.4489 28 1 -0.4849 0.8401 0.0004 29 1 -0.4217 -1.8690 -1.0792 30 1 -0.7055 -2.3925 0.6091 31 1 0.0271 -4.1198 -1.8185 32 1 -1.2630 -4.3951 -0.6005 33 1 1.1366 -5.6562 -0.3286 34 1 0.3234 -4.9722 1.1171 35 1 1.6295 -3.5881 2.4270 36 1 3.1792 -2.9349 1.8441 37 1 3.8751 -5.2697 1.2280 38 1 2.3669 -5.8737 1.9549 39 1 3.0159 -4.8765 4.1305 40 1 4.5242 -4.2724 3.4035 41 1 4.3746 -7.0569 2.9570 42 1 4.9634 -8.6883 5.0170 43 1 6.4762 -8.0884 4.2961 44 1 7.1197 -7.0934 6.4742 45 1 5.6069 -7.6932 7.1952 46 1 9.6603 -11.0649 6.4974 47 1 7.8762 -12.5134 7.6169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663124097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:20 Heat of formation + Delta-G solvation = 11.047024 kcal Electronic energy + Delta-G solvation = -25454.003603 eV Core-core repulsion = 21763.470296 eV Total energy + Delta-G solvation = -3690.533307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22475 -39.69784 -37.83197 -35.62620 -34.23870 -32.95187 -32.14046 -30.20991 -29.37273 -28.20232 -26.48733 -24.80193 -24.13189 -23.18734 -21.52697 -20.53051 -20.27309 -20.07650 -19.12308 -18.45391 -17.18085 -16.72154 -16.12874 -16.02933 -15.84149 -15.19941 -14.91835 -14.88543 -14.31998 -14.23258 -14.00063 -13.79971 -13.29314 -13.10049 -12.78454 -12.52768 -12.27009 -12.03545 -11.94025 -11.90126 -11.69583 -11.53548 -11.43126 -11.01790 -10.79069 -10.72509 -10.54453 -10.12243 -10.06344 -10.01358 -9.97102 -9.83944 -9.75175 -9.60126 -9.58069 -9.31270 -9.13267 -8.54775 -6.74300 -5.71172 -3.05949 0.25448 0.92177 1.31692 2.39224 2.49388 3.03564 3.41427 3.47291 3.48783 3.74549 4.37614 4.51736 4.58604 4.66661 4.76188 4.87070 5.03661 5.04590 5.13521 5.19008 5.39064 5.41808 5.46831 5.61664 5.62360 5.63622 5.74451 5.74902 5.87052 5.98413 6.04946 6.12729 6.28568 6.36438 6.38938 6.44845 6.58803 6.71894 6.74342 6.98064 7.19519 7.31082 7.36669 7.57675 7.65829 7.83355 8.08273 8.32606 9.23612 9.85476 10.55084 11.41302 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.001650 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.188485 B =16962.043678 C =17825.594962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.172 3.828 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.117 3.883 18 N -0.728 5.728 19 C 0.512 3.488 20 O -0.540 6.540 21 C -0.135 4.135 22 C -0.030 4.030 23 C 0.054 3.946 24 N -0.474 5.474 25 C 0.039 3.961 26 C -0.263 4.263 27 S 0.122 5.878 28 H 0.252 0.748 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.176 0.824 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.856 -25.481 11.430 29.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.165 4.165 17 C -0.006 4.006 18 N -0.379 5.379 19 C 0.297 3.703 20 O -0.417 6.417 21 C -0.176 4.176 22 C -0.071 4.071 23 C -0.224 4.224 24 N -0.188 5.188 25 C -0.112 4.112 26 C -0.403 4.403 27 S 0.376 5.624 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.234 0.766 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.193 0.807 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.168 -24.363 12.183 29.076 hybrid contribution 1.376 0.089 -0.432 1.445 sum 11.545 -24.274 11.751 29.336 Atomic orbital electron populations 1.69941 1.04963 1.25060 1.56581 1.24888 0.95667 0.97736 1.01995 0.86176 0.78750 0.83664 0.77538 1.21658 1.21691 1.20621 1.18961 0.90306 0.82343 1.43748 0.90802 1.44615 1.05845 1.01214 1.80402 1.21464 0.85135 0.90062 0.98611 1.23011 0.97467 0.99809 0.98624 1.22587 0.97168 0.97107 0.99330 1.20919 0.93866 0.87005 0.92751 0.95219 1.22028 1.00108 0.94363 0.99730 1.21834 0.99773 1.00197 0.94740 1.21525 0.96962 0.84257 0.97848 1.46110 1.55697 1.17364 1.18777 1.20462 0.78551 0.89400 0.81846 1.90737 1.59847 1.45843 1.45278 1.21635 1.01343 0.96157 0.98487 1.20005 1.00234 0.89917 0.96950 1.27160 0.93088 1.01208 1.00908 1.66302 1.13307 1.18611 1.20576 1.21858 1.01491 0.88315 0.99492 1.27125 0.96366 1.06035 1.10733 1.84147 1.15833 1.06352 1.56096 0.93767 0.91219 0.95848 0.92509 0.92571 0.92670 0.92057 0.92209 0.91685 0.91770 0.91721 0.91421 0.91350 0.76613 0.88612 0.88126 0.87716 0.88596 0.80681 0.80543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.58 55.49 0.59 -26.39 16 2 C -0.01 -0.18 5.47 -17.43 -0.10 -0.27 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.19 9.75 -15.06 -0.15 -6.33 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.91 3.14 -162.32 -0.51 -15.42 16 10 C 0.17 4.15 5.44 -2.35 -0.01 4.14 16 11 C -0.15 -2.81 7.08 -24.58 -0.17 -2.98 16 12 C -0.12 -2.07 5.61 -24.90 -0.14 -2.21 16 13 C 0.16 3.19 3.18 -66.96 -0.21 2.98 16 14 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 15 C -0.12 -2.13 4.69 -26.73 -0.13 -2.26 16 16 C -0.13 -1.60 5.07 -26.73 -0.14 -1.73 16 17 C 0.12 1.47 5.67 -4.04 -0.02 1.45 16 18 N -0.73 -7.24 5.56 -60.29 -0.33 -7.58 16 19 C 0.51 5.61 7.83 -10.98 -0.09 5.53 16 20 O -0.54 -8.22 15.98 5.56 0.09 -8.13 16 21 C -0.13 -1.00 5.68 -27.88 -0.16 -1.15 16 22 C -0.03 -0.25 5.09 -27.88 -0.14 -0.39 16 23 C 0.05 0.46 6.64 -13.46 -0.09 0.37 16 24 N -0.47 -4.56 10.54 -11.86 -0.13 -4.68 16 25 C 0.04 0.29 11.35 -19.18 -0.22 0.07 16 26 C -0.26 -1.56 11.37 29.12 0.33 -1.23 16 27 S 0.12 0.79 23.18 -107.50 -2.49 -1.70 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 30 H 0.02 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.98 7.79 -51.93 -0.40 0.57 16 35 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.06 1.26 7.89 -51.93 -0.41 0.85 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.40 2.78 8.47 -40.82 -0.35 2.43 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 46 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 47 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -33.52 396.28 -11.05 -44.58 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.79 Total: 0.20 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.43 Total: -4.03 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.38 Total: -54.07 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.49 Total: -1.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.52 -11.05 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663124097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.622 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds