Wall clock time and date at job start Tue Mar 31 2020 19:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48504 * 109.46847 * 270.00012 * 3 2 1 5 5 H 1.48498 * 109.47464 * 29.99710 * 3 2 1 6 6 H 1.48498 * 109.46980 * 149.99957 * 3 2 1 7 7 C 1.38804 * 119.99427 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00662 * 0.02562 * 7 2 1 10 10 C 1.47749 * 125.81790 * 14.06255 * 9 7 2 11 11 C 1.54911 * 104.83777 * 155.83286 * 10 9 7 12 12 C 1.55160 * 101.58274 * 37.09450 * 11 10 9 13 13 C 1.47020 * 125.65110 * 194.15823 * 9 7 2 14 14 H 1.08998 * 109.88293 * 300.59718 * 13 9 7 15 15 C 1.52998 * 109.88215 * 61.60730 * 13 9 7 16 16 C 1.53000 * 109.47437 * 183.32919 * 15 13 9 17 17 C 1.52998 * 109.47494 * 174.92552 * 16 15 13 18 18 N 1.46497 * 109.47254 * 180.02562 * 17 16 15 19 19 C 1.34777 * 120.00117 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99617 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00126 * 179.72067 * 19 18 17 22 22 C 1.52999 * 109.47206 * 180.27502 * 21 19 18 23 23 C 1.50699 * 109.47185 * 180.02562 * 22 21 19 24 24 N 1.29020 * 124.91973 * 89.99658 * 23 22 21 25 25 C 1.31786 * 117.13031 * 179.97438 * 24 23 22 26 26 C 1.33641 * 114.49417 * 359.97438 * 25 24 23 27 27 S 1.70982 * 124.91164 * 269.69785 * 23 22 21 28 28 H 0.97000 * 119.99293 * 359.97438 * 1 2 3 29 29 H 1.09004 * 110.28917 * 37.03399 * 10 9 7 30 30 H 1.08991 * 110.43784 * 274.71085 * 10 9 7 31 31 H 1.09006 * 111.00606 * 279.01835 * 11 10 9 32 32 H 1.09004 * 111.03972 * 155.18444 * 11 10 9 33 33 H 1.09001 * 110.71680 * 206.13061 * 12 11 10 34 34 H 1.09000 * 110.71712 * 82.85980 * 12 11 10 35 35 H 1.08998 * 109.47366 * 63.33142 * 15 13 9 36 36 H 1.09000 * 109.47219 * 303.33425 * 15 13 9 37 37 H 1.09001 * 109.46927 * 54.92071 * 16 15 13 38 38 H 1.08997 * 109.46992 * 294.92720 * 16 15 13 39 39 H 1.09001 * 109.47426 * 59.99825 * 17 16 15 40 40 H 1.09005 * 109.46929 * 299.99862 * 17 16 15 41 41 H 0.96998 * 119.99991 * 359.97438 * 18 17 16 42 42 H 1.08995 * 109.47333 * 300.27546 * 21 19 18 43 43 H 1.09001 * 109.46967 * 60.27686 * 21 19 18 44 44 H 1.09004 * 109.46799 * 300.00027 * 22 21 19 45 45 H 1.08994 * 109.47095 * 59.99873 * 22 21 19 46 46 H 1.07995 * 122.75533 * 180.02562 * 25 24 23 47 47 H 1.07998 * 126.03858 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1132 -2.5559 -0.2911 11 6 -0.2525 -4.0227 -0.7694 12 6 0.7679 -4.7476 0.1475 13 6 1.9001 -3.7093 0.2933 14 1 2.6996 -3.9308 -0.4138 15 6 2.4477 -3.7336 1.7217 16 6 3.1168 -5.0834 1.9885 17 6 3.7742 -5.0627 3.3699 18 7 4.4154 -6.3549 3.6251 19 6 5.0612 -6.5687 4.7886 20 8 5.1119 -5.6911 5.6241 21 6 5.7154 -7.9002 5.0537 22 6 6.3675 -7.8815 6.4376 23 6 7.0223 -9.2127 6.7024 24 7 8.2422 -9.5082 6.4038 25 6 8.6578 -10.7217 6.7060 26 6 7.7373 -11.4926 7.2929 27 16 6.2581 -10.5478 7.4489 28 1 -0.4849 0.8401 0.0004 29 1 -0.4217 -1.8690 -1.0792 30 1 -0.7055 -2.3925 0.6091 31 1 0.0271 -4.1198 -1.8185 32 1 -1.2630 -4.3951 -0.6005 33 1 1.1366 -5.6562 -0.3286 34 1 0.3234 -4.9722 1.1171 35 1 1.6295 -3.5881 2.4270 36 1 3.1792 -2.9349 1.8441 37 1 3.8751 -5.2697 1.2280 38 1 2.3669 -5.8737 1.9549 39 1 3.0159 -4.8765 4.1305 40 1 4.5242 -4.2724 3.4035 41 1 4.3746 -7.0569 2.9570 42 1 4.9634 -8.6883 5.0170 43 1 6.4762 -8.0884 4.2961 44 1 7.1197 -7.0934 6.4742 45 1 5.6069 -7.6932 7.1952 46 1 9.6603 -11.0649 6.4974 47 1 7.8762 -12.5134 7.6169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663124097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:19 Heat of formation + Delta-G solvation = -10.697957 kcal Electronic energy + Delta-G solvation = -25454.946536 eV Core-core repulsion = 21763.470296 eV Total energy + Delta-G solvation = -3691.476240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94532 -40.44195 -39.44072 -36.73144 -34.92072 -34.66962 -33.60812 -31.26335 -30.80171 -29.47456 -27.31028 -26.55047 -25.43631 -23.99809 -22.67755 -21.84616 -21.43491 -20.83419 -20.64729 -19.00623 -18.70537 -17.93603 -17.06376 -16.98425 -16.86362 -16.38754 -16.12377 -15.92585 -15.68870 -15.43479 -14.93230 -14.87501 -14.32324 -14.05052 -13.88942 -13.69111 -13.64984 -13.47200 -13.16859 -13.07161 -12.97945 -12.72878 -12.62372 -12.40987 -12.23374 -12.15931 -12.00651 -11.81175 -11.65925 -11.53071 -11.29725 -11.15163 -10.95027 -10.64702 -10.60470 -10.36207 -10.08608 -9.82405 -8.76812 -7.84840 -5.19994 -0.25851 0.42651 0.81885 1.44056 1.45432 1.53930 1.63472 1.84852 2.21208 2.50147 3.18232 3.33835 3.68844 3.73286 3.96117 4.00076 4.02300 4.10599 4.19003 4.26103 4.30600 4.37913 4.42714 4.45896 4.56739 4.58037 4.64404 4.81657 4.83953 4.84900 4.88613 4.99858 5.01624 5.06232 5.16259 5.24398 5.25720 5.36362 5.45648 5.51671 5.54748 5.69231 5.72533 5.80951 6.28533 6.58017 6.79403 7.13401 7.27407 7.83307 8.50891 9.26767 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.001650 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.188485 B =16962.043678 C =17825.594962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.620 5.620 10 C 0.173 3.827 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.035 0.965 15 C -0.113 4.113 16 C -0.107 4.107 17 C 0.124 3.876 18 N -0.715 5.715 19 C 0.510 3.490 20 O -0.589 6.589 21 C -0.121 4.121 22 C -0.028 4.028 23 C 0.034 3.966 24 N -0.504 5.504 25 C 0.018 3.982 26 C -0.253 4.253 27 S 0.148 5.852 28 H 0.245 0.755 29 H 0.029 0.971 30 H -0.009 1.009 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.419 0.581 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.193 0.807 47 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.723 -29.303 11.284 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.359 4.359 8 H 0.093 0.907 9 N -0.344 5.344 10 C 0.048 3.952 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.052 0.948 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.000 4.000 18 N -0.367 5.367 19 C 0.297 3.703 20 O -0.469 6.469 21 C -0.162 4.162 22 C -0.069 4.069 23 C -0.243 4.243 24 N -0.219 5.219 25 C -0.132 4.132 26 C -0.392 4.392 27 S 0.401 5.599 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.009 0.991 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.256 0.744 42 H 0.143 0.857 43 H 0.131 0.869 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.210 0.790 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 11.060 -28.250 12.011 32.629 hybrid contribution 1.137 1.209 -0.357 1.697 sum 12.197 -27.041 11.654 31.872 Atomic orbital electron populations 1.70152 1.06260 1.25087 1.58354 1.25659 0.96511 1.00909 1.02905 0.85199 0.77725 0.79728 0.77463 1.21237 1.22277 1.19635 1.19287 0.90662 0.83781 1.42141 0.90683 1.44932 1.06280 1.02485 1.80726 1.21273 0.84599 0.93251 0.96054 1.22882 0.99771 0.95668 0.99270 1.22585 0.95086 0.97281 0.99839 1.21225 0.95173 0.85433 0.93672 0.94752 1.21826 0.98979 0.96549 0.97963 1.21628 1.00434 0.97642 0.94855 1.21238 0.96123 0.85097 0.97587 1.45918 1.54885 1.16799 1.19102 1.21095 0.77865 0.90105 0.81216 1.90723 1.61619 1.47685 1.46896 1.21590 1.01970 0.94452 0.98190 1.19904 0.99668 0.89702 0.97626 1.27061 0.93337 1.01774 1.02084 1.66292 1.14084 1.20012 1.21543 1.22189 1.02732 0.87970 1.00327 1.27516 0.95566 1.06986 1.09108 1.84031 1.15609 1.05159 1.55065 0.94551 0.95202 0.99065 0.91825 0.90055 0.88410 0.90967 0.94060 0.94670 0.90110 0.88999 0.92872 0.93596 0.74364 0.85717 0.86871 0.89915 0.88731 0.79001 0.77751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.23 10.58 21.65 0.23 -58.00 16 2 C -0.07 -3.88 5.47 84.86 0.46 -3.41 16 3 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.23 -12.92 9.75 84.03 0.82 -12.10 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.62 -31.46 3.14 -667.45 -2.09 -33.55 16 10 C 0.17 8.57 5.44 86.79 0.47 9.04 16 11 C -0.14 -4.84 7.08 31.99 0.23 -4.61 16 12 C -0.11 -3.29 5.61 31.78 0.18 -3.11 16 13 C 0.15 5.73 3.18 45.34 0.14 5.88 16 14 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 15 C -0.11 -3.88 4.69 30.59 0.14 -3.74 16 16 C -0.11 -2.42 5.07 30.59 0.16 -2.26 16 17 C 0.12 2.99 5.67 86.38 0.49 3.48 16 18 N -0.71 -12.68 5.56 -463.06 -2.57 -15.26 16 19 C 0.51 10.62 7.83 87.66 0.69 11.31 16 20 O -0.59 -18.21 15.98 -3.03 -0.05 -18.26 16 21 C -0.12 -1.56 5.68 29.85 0.17 -1.39 16 22 C -0.03 -0.45 5.09 29.85 0.15 -0.30 16 23 C 0.03 0.54 6.64 88.52 0.59 1.13 16 24 N -0.50 -9.21 10.54 -191.45 -2.02 -11.23 16 25 C 0.02 0.23 11.35 83.66 0.95 1.18 16 26 C -0.25 -2.33 11.37 66.78 0.76 -1.57 16 27 S 0.15 1.60 23.18 -56.49 -1.31 0.29 16 28 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.03 1.68 6.90 -2.38 -0.02 1.66 16 30 H -0.01 -0.47 8.08 -2.39 -0.02 -0.49 16 31 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 35 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 36 H 0.03 1.39 7.89 -2.39 -0.02 1.37 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.64 7.57 -2.39 -0.02 1.63 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.42 4.27 8.47 -92.71 -0.79 3.48 16 42 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 45 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 46 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 47 H 0.21 0.58 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -77.84 396.28 0.78 -77.06 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.17 Total: 10.45 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 6.40 Total: -0.48 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.46 Total: -118.04 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.05 Total: -18.26 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.31 Total: 0.29 kcal Total: -77.84 0.78 -77.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663124097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.363 kcal (2) G-P(sol) polarization free energy of solvation -77.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds