Wall clock time and date at job start Tue Mar 31 2020 20:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38343 * 119.86935 * 2 1 4 4 C 1.37943 * 120.17368 * 180.23643 * 3 2 1 5 5 C 1.39597 * 119.90305 * 359.49284 * 4 3 2 6 6 C 1.47856 * 120.13147 * 180.23378 * 5 4 3 7 7 O 1.21558 * 119.99872 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00143 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00118 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47375 * 180.02562 * 9 8 6 11 11 N 1.46907 * 109.47371 * 180.02562 * 10 9 8 12 12 C 1.46899 * 110.99640 * 66.04596 * 11 10 9 13 13 C 1.46901 * 110.99741 * 189.99574 * 11 10 9 14 14 C 1.50704 * 109.46444 * 169.99881 * 13 11 10 15 15 O 1.21292 * 120.00388 * 0.02562 * 14 13 11 16 16 N 1.34779 * 119.99313 * 180.02562 * 14 13 11 17 17 C 1.37105 * 119.99730 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99566 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00102 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99729 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99951 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46968 * 89.99810 * 21 19 17 23 23 H 1.48495 * 109.46889 * 209.99797 * 21 19 17 24 24 H 1.48500 * 109.46934 * 330.00113 * 21 19 17 25 25 C 1.39527 * 119.73825 * 0.25250 * 5 4 3 26 26 C 1.38207 * 119.82448 * 0.02562 * 25 5 4 27 27 F 1.35102 * 119.95330 * 180.02562 * 26 25 5 28 28 H 1.08994 * 109.47409 * 270.27095 * 1 2 3 29 29 H 1.09005 * 109.47176 * 30.26892 * 1 2 3 30 30 H 1.09002 * 109.47607 * 150.26888 * 1 2 3 31 31 H 1.08000 * 119.91295 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.04993 * 179.77479 * 4 3 2 33 33 H 0.97005 * 119.99983 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.47558 * 300.00481 * 9 8 6 35 35 H 1.09005 * 109.47235 * 60.00306 * 9 8 6 36 36 H 1.09003 * 109.47146 * 300.00123 * 10 9 8 37 37 H 1.08999 * 109.47309 * 60.00378 * 10 9 8 38 38 H 1.09003 * 109.47527 * 60.00309 * 12 11 10 39 39 H 1.09005 * 109.46545 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47142 * 300.00116 * 12 11 10 41 41 H 1.08990 * 109.47578 * 289.99891 * 13 11 10 42 42 H 1.09001 * 109.47197 * 50.00293 * 13 11 10 43 43 H 0.96998 * 120.00355 * 359.97438 * 16 14 13 44 44 H 0.97003 * 119.99593 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.08667 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5753 1.2070 -0.0049 5 6 4.2777 0.0006 0.0008 6 6 5.7563 0.0026 0.0008 7 8 6.3626 1.0561 -0.0047 8 7 6.4317 -1.1636 0.0068 9 6 7.8967 -1.1616 0.0062 10 6 8.4087 -2.6034 0.0132 11 7 9.8778 -2.6014 0.0132 12 6 10.4033 -2.0378 1.2639 13 6 10.4060 -3.9524 -0.2183 14 6 11.8922 -3.8767 -0.4560 15 8 12.4560 -2.8029 -0.4341 16 7 12.5949 -5.0021 -0.6928 17 6 13.9471 -4.9333 -0.9085 18 1 14.4491 -3.9772 -0.8891 19 6 14.6717 -6.0936 -1.1522 20 7 14.0610 -7.2569 -1.1753 21 14 16.5140 -5.9998 -1.4468 22 1 17.2293 -6.1215 -0.1511 23 1 16.9283 -7.1059 -2.3468 24 1 16.8488 -4.6973 -2.0766 25 6 3.5790 -1.2071 0.0061 26 6 2.1969 -1.2016 0.0052 27 9 1.5177 -2.3694 0.0109 28 1 -0.3634 0.0049 1.0276 29 1 -0.3634 0.8876 -0.5180 30 1 -0.3634 -0.8924 -0.5096 31 1 1.6524 2.1329 -0.0004 32 1 4.1112 2.1447 -0.0086 33 1 5.9479 -2.0044 0.0108 34 1 8.2591 -0.6521 -0.8866 35 1 8.2597 -0.6425 0.8934 36 1 8.0464 -3.1133 0.9059 37 1 8.0458 -3.1221 -0.8741 38 1 10.0547 -2.6351 2.1064 39 1 11.4930 -2.0487 1.2375 40 1 10.0524 -1.0119 1.3759 41 1 10.2089 -4.5742 0.6549 42 1 9.9201 -4.3878 -1.0915 43 1 12.1441 -5.8608 -0.7099 44 1 14.5668 -8.0669 -1.3458 45 1 4.1167 -2.1437 0.0102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663226904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:41 Heat of formation + Delta-G solvation = -84.615200 kcal Electronic energy + Delta-G solvation = -27368.746099 eV Core-core repulsion = 23107.851391 eV Total energy + Delta-G solvation = -4260.894708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.39185 -40.56889 -38.93275 -38.54397 -36.81708 -34.84566 -33.85440 -33.46386 -31.26761 -31.14414 -29.76398 -27.99198 -27.53600 -25.34542 -24.05466 -23.52889 -22.64670 -21.29992 -20.78151 -19.18179 -18.61877 -17.86028 -17.29487 -16.58428 -16.26595 -16.20109 -15.98193 -15.85518 -15.74848 -15.06409 -14.85751 -14.62173 -14.47992 -14.08291 -13.92794 -13.80918 -13.70310 -13.48419 -13.29006 -13.06417 -12.96847 -12.31381 -12.15370 -12.14166 -11.97018 -11.82875 -11.53279 -11.42838 -11.29131 -11.08374 -10.95149 -10.39058 -10.31382 -10.22014 -9.57934 -9.48442 -9.34022 -9.12618 -8.49642 -8.00000 -7.90637 -6.42330 -3.83064 0.19418 0.62453 2.36977 2.72434 3.17715 3.26452 3.26589 3.32734 3.62801 3.89117 3.98461 4.09072 4.09444 4.25882 4.43265 4.48990 4.64850 4.79433 4.94238 4.99180 5.02020 5.05534 5.10099 5.23913 5.35306 5.38093 5.41963 5.52345 5.61181 5.66440 5.71833 5.74625 5.81374 5.85879 5.90896 5.98050 6.12082 6.25966 6.27085 6.54044 7.11975 7.20247 7.29843 7.54956 7.87217 8.05783 8.61108 9.17703 9.53569 10.05398 10.75395 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.001607 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.678403 B =17424.246784 C =18192.269315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.096 4.096 3 C -0.100 4.100 4 C -0.065 4.065 5 C -0.109 4.109 6 C 0.558 3.442 7 O -0.528 6.528 8 N -0.722 5.722 9 C 0.121 3.879 10 C 0.043 3.957 11 N -0.514 5.514 12 C 0.017 3.983 13 C 0.047 3.953 14 C 0.443 3.557 15 O -0.576 6.576 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.118 4.118 26 C 0.090 3.910 27 F -0.134 7.134 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.399 0.601 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.016 0.984 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.662 10.151 3.829 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.097 4.097 3 C -0.118 4.118 4 C -0.084 4.084 5 C -0.112 4.112 6 C 0.345 3.655 7 O -0.405 6.405 8 N -0.375 5.375 9 C -0.002 4.002 10 C -0.086 4.086 11 N -0.239 5.239 12 C -0.130 4.130 13 C -0.084 4.084 14 C 0.229 3.771 15 O -0.460 6.460 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.137 4.137 26 C 0.071 3.929 27 F -0.113 7.113 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.234 0.766 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.034 0.966 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.578 11.681 3.413 30.143 hybrid contribution 0.007 -1.955 0.489 2.016 sum -27.570 9.725 3.902 29.495 Atomic orbital electron populations 1.20815 0.89714 1.03803 1.03245 1.20205 0.97442 0.91944 1.00081 1.20961 0.93722 0.97382 0.99776 1.21374 0.93763 0.98154 0.95106 1.19796 0.93215 0.93526 1.04707 1.18077 0.86629 0.83975 0.76830 1.90818 1.69626 1.30899 1.49189 1.45862 1.08062 1.08384 1.75156 1.21405 0.77488 0.97502 1.03837 1.22261 0.89557 0.95481 1.01263 1.61445 1.04320 1.21579 1.36527 1.22639 1.04032 0.98535 0.87819 1.21872 0.96153 0.89175 1.01234 1.19698 0.87688 0.85163 0.84582 1.90494 1.71012 1.28338 1.56172 1.41861 1.08494 1.07471 1.62244 1.19710 0.82718 0.95236 1.45191 0.87873 1.25257 1.00625 0.94655 0.97382 1.69612 1.36961 0.98068 1.49710 0.85855 0.82127 0.78038 0.78261 1.20439 1.20940 1.19386 1.21279 0.92588 0.98888 1.00979 1.17336 0.89578 0.81315 1.04703 1.91516 1.79933 1.45856 1.93951 0.90292 0.90508 0.90826 0.84137 0.83708 0.76630 0.89875 0.90811 0.94495 0.90199 0.96594 0.88317 0.91813 0.93321 0.89299 0.77507 0.91891 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 9.82 36.00 0.35 -0.16 16 2 C -0.10 -0.61 5.89 -104.47 -0.62 -1.23 16 3 C -0.10 -0.60 9.68 -39.65 -0.38 -0.98 16 4 C -0.07 -0.51 9.59 -39.18 -0.38 -0.89 16 5 C -0.11 -0.97 5.87 -104.97 -0.62 -1.58 16 6 C 0.56 6.29 7.77 -12.33 -0.10 6.19 16 7 O -0.53 -7.91 16.35 5.31 0.09 -7.82 16 8 N -0.72 -6.90 5.51 -61.25 -0.34 -7.24 16 9 C 0.12 1.41 5.60 -4.05 -0.02 1.39 16 10 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 11 N -0.51 -8.29 4.50 -244.36 -1.10 -9.39 16 12 C 0.02 0.28 8.96 60.06 0.54 0.82 16 13 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 14 C 0.44 10.32 7.47 -10.98 -0.08 10.24 16 15 O -0.58 -15.38 13.91 5.55 0.08 -15.30 16 16 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 17 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 21 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 C -0.12 -0.87 9.52 -39.11 -0.37 -1.25 16 26 C 0.09 0.69 7.23 -39.47 -0.29 0.40 16 27 F -0.13 -1.11 16.46 2.25 0.04 -1.07 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 30 H 0.07 0.33 7.63 -51.93 -0.40 -0.06 16 31 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.15 1.12 7.65 -52.49 -0.40 0.72 16 33 H 0.40 2.66 6.51 -40.82 -0.27 2.39 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.93 6.55 -51.93 -0.34 0.59 16 36 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 40 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 41 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.09 1.37 7.93 -51.93 -0.41 0.95 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.14 0.75 6.40 -52.49 -0.34 0.41 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -33.52 382.12 -8.07 -41.59 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.99 Total: 9.05 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -2.25 Total: 6.29 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.77 Total: -54.45 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.12 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.52 -8.07 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663226904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.023 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds