Wall clock time and date at job start Tue Mar 31 2020 20:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38343 * 119.86935 * 2 1 4 4 C 1.37943 * 120.17368 * 180.23643 * 3 2 1 5 5 C 1.39597 * 119.90305 * 359.49284 * 4 3 2 6 6 C 1.47856 * 120.13147 * 180.23378 * 5 4 3 7 7 O 1.21558 * 119.99872 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00143 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00118 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47375 * 180.02562 * 9 8 6 11 11 N 1.46907 * 109.47371 * 180.02562 * 10 9 8 12 12 C 1.46899 * 110.99640 * 66.04596 * 11 10 9 13 13 C 1.46901 * 110.99741 * 189.99574 * 11 10 9 14 14 C 1.50704 * 109.46444 * 169.99881 * 13 11 10 15 15 O 1.21292 * 120.00388 * 0.02562 * 14 13 11 16 16 N 1.34779 * 119.99313 * 180.02562 * 14 13 11 17 17 C 1.37105 * 119.99730 * 180.02562 * 16 14 13 18 18 H 1.08005 * 119.99566 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00102 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99729 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99951 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46968 * 89.99810 * 21 19 17 23 23 H 1.48495 * 109.46889 * 209.99797 * 21 19 17 24 24 H 1.48500 * 109.46934 * 330.00113 * 21 19 17 25 25 C 1.39527 * 119.73825 * 0.25250 * 5 4 3 26 26 C 1.38207 * 119.82448 * 0.02562 * 25 5 4 27 27 F 1.35102 * 119.95330 * 180.02562 * 26 25 5 28 28 H 1.08994 * 109.47409 * 270.27095 * 1 2 3 29 29 H 1.09005 * 109.47176 * 30.26892 * 1 2 3 30 30 H 1.09002 * 109.47607 * 150.26888 * 1 2 3 31 31 H 1.08000 * 119.91295 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.04993 * 179.77479 * 4 3 2 33 33 H 0.97005 * 119.99983 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.47558 * 300.00481 * 9 8 6 35 35 H 1.09005 * 109.47235 * 60.00306 * 9 8 6 36 36 H 1.09003 * 109.47146 * 300.00123 * 10 9 8 37 37 H 1.08999 * 109.47309 * 60.00378 * 10 9 8 38 38 H 1.09003 * 109.47527 * 60.00309 * 12 11 10 39 39 H 1.09005 * 109.46545 * 179.97438 * 12 11 10 40 40 H 1.09000 * 109.47142 * 300.00116 * 12 11 10 41 41 H 1.08990 * 109.47578 * 289.99891 * 13 11 10 42 42 H 1.09001 * 109.47197 * 50.00293 * 13 11 10 43 43 H 0.96998 * 120.00355 * 359.97438 * 16 14 13 44 44 H 0.97003 * 119.99593 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.08667 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5753 1.2070 -0.0049 5 6 4.2777 0.0006 0.0008 6 6 5.7563 0.0026 0.0008 7 8 6.3626 1.0561 -0.0047 8 7 6.4317 -1.1636 0.0068 9 6 7.8967 -1.1616 0.0062 10 6 8.4087 -2.6034 0.0132 11 7 9.8778 -2.6014 0.0132 12 6 10.4033 -2.0378 1.2639 13 6 10.4060 -3.9524 -0.2183 14 6 11.8922 -3.8767 -0.4560 15 8 12.4560 -2.8029 -0.4341 16 7 12.5949 -5.0021 -0.6928 17 6 13.9471 -4.9333 -0.9085 18 1 14.4491 -3.9772 -0.8891 19 6 14.6717 -6.0936 -1.1522 20 7 14.0610 -7.2569 -1.1753 21 14 16.5140 -5.9998 -1.4468 22 1 17.2293 -6.1215 -0.1511 23 1 16.9283 -7.1059 -2.3468 24 1 16.8488 -4.6973 -2.0766 25 6 3.5790 -1.2071 0.0061 26 6 2.1969 -1.2016 0.0052 27 9 1.5177 -2.3694 0.0109 28 1 -0.3634 0.0049 1.0276 29 1 -0.3634 0.8876 -0.5180 30 1 -0.3634 -0.8924 -0.5096 31 1 1.6524 2.1329 -0.0004 32 1 4.1112 2.1447 -0.0086 33 1 5.9479 -2.0044 0.0108 34 1 8.2591 -0.6521 -0.8866 35 1 8.2597 -0.6425 0.8934 36 1 8.0464 -3.1133 0.9059 37 1 8.0458 -3.1221 -0.8741 38 1 10.0547 -2.6351 2.1064 39 1 11.4930 -2.0487 1.2375 40 1 10.0524 -1.0119 1.3759 41 1 10.2089 -4.5742 0.6549 42 1 9.9201 -4.3878 -1.0915 43 1 12.1441 -5.8608 -0.7099 44 1 14.5668 -8.0669 -1.3458 45 1 4.1167 -2.1437 0.0102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663226904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:40 Heat of formation + Delta-G solvation = -108.932102 kcal Electronic energy + Delta-G solvation = -27369.800559 eV Core-core repulsion = 23107.851391 eV Total energy + Delta-G solvation = -4261.949168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97093 -41.34128 -40.38280 -39.46397 -38.16460 -36.06994 -35.61941 -34.03669 -33.26772 -31.71459 -30.78187 -29.20819 -28.31159 -26.96900 -25.41578 -24.09107 -23.38674 -22.36189 -21.56495 -20.96056 -19.84762 -19.35912 -18.00343 -17.75351 -17.20483 -16.99712 -16.96348 -16.73685 -16.59026 -16.36637 -16.23424 -15.95158 -15.55880 -15.41436 -15.05081 -14.90517 -14.47224 -14.31742 -14.23518 -14.22164 -13.77648 -13.44921 -13.35408 -13.03762 -12.97401 -12.85064 -12.66002 -12.58294 -12.55642 -12.39738 -12.39034 -12.16528 -12.09641 -11.45114 -11.22245 -10.30860 -10.27432 -10.03350 -9.98454 -9.71621 -9.24713 -8.45513 -5.93721 -0.40457 0.08675 1.38427 1.42334 1.54787 1.64479 1.86605 2.07510 2.30546 2.61666 2.85757 3.08628 3.21641 3.42514 3.54806 3.59852 3.80407 3.89867 3.97570 4.04872 4.15835 4.25458 4.36031 4.45227 4.53345 4.54007 4.57936 4.63474 4.64121 4.75207 4.82982 4.88140 4.92433 4.95972 5.15227 5.20481 5.21751 5.25606 5.27077 5.42513 5.74551 5.84923 6.04851 6.15817 6.38995 6.62663 7.06031 7.14954 7.58603 8.15039 8.71795 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.001607 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.678403 B =17424.246784 C =18192.269315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.091 4.091 3 C -0.095 4.095 4 C -0.073 4.073 5 C -0.126 4.126 6 C 0.557 3.443 7 O -0.574 6.574 8 N -0.708 5.708 9 C 0.129 3.871 10 C 0.051 3.949 11 N -0.539 5.539 12 C 0.024 3.976 13 C 0.060 3.940 14 C 0.439 3.561 15 O -0.616 6.616 16 N -0.574 5.574 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.275 1.275 25 C -0.113 4.113 26 C 0.074 3.926 27 F -0.139 7.139 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.169 0.831 32 H 0.140 0.860 33 H 0.415 0.585 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.035 0.965 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.993 9.349 3.997 32.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.092 4.092 5 C -0.129 4.129 6 C 0.345 3.655 7 O -0.455 6.455 8 N -0.361 5.361 9 C 0.005 3.995 10 C -0.077 4.077 11 N -0.263 5.263 12 C -0.124 4.124 13 C -0.071 4.071 14 C 0.227 3.773 15 O -0.502 6.502 16 N -0.212 5.212 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.200 1.200 25 C -0.132 4.132 26 C 0.054 3.946 27 F -0.118 7.118 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.187 0.813 32 H 0.158 0.842 33 H 0.253 0.747 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.133 0.867 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -29.957 10.827 3.586 32.054 hybrid contribution 0.621 -1.645 0.449 1.815 sum -29.336 9.182 4.036 31.003 Atomic orbital electron populations 1.20904 0.88056 1.04599 1.04093 1.20540 0.98728 0.91580 0.98405 1.21226 0.92895 0.98495 0.98634 1.21502 0.94756 0.97746 0.95194 1.19624 0.91681 0.94606 1.07034 1.18473 0.87654 0.83552 0.75773 1.90791 1.70695 1.32488 1.51514 1.45677 1.07206 1.08906 1.74318 1.21164 0.78640 0.97458 1.02256 1.22262 0.86524 0.95511 1.03388 1.61329 1.07166 1.21017 1.36834 1.22481 1.01408 0.99791 0.88758 1.21740 0.91475 0.90492 1.03373 1.20828 0.90237 0.83920 0.82326 1.90477 1.72708 1.29763 1.57238 1.41922 1.07917 1.08276 1.63070 1.19651 0.84388 0.94755 1.47451 0.90438 1.25992 1.04562 0.94057 0.96543 1.69666 1.38409 0.98444 1.49563 0.84953 0.77142 0.77946 0.78448 1.19678 1.19548 1.19951 1.21381 0.92738 0.99023 1.00045 1.17518 0.89784 0.81625 1.05631 1.91504 1.79981 1.46184 1.94101 0.89300 0.88665 0.91119 0.81309 0.84231 0.74680 0.92155 0.91925 0.91962 0.88241 0.94620 0.92499 0.90747 0.90897 0.86706 0.76954 0.91347 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.82 71.23 0.70 -0.01 16 2 C -0.09 -0.97 5.89 -19.76 -0.12 -1.09 16 3 C -0.09 -0.93 9.68 22.22 0.22 -0.72 16 4 C -0.07 -1.09 9.59 22.53 0.22 -0.87 16 5 C -0.13 -2.13 5.87 -20.09 -0.12 -2.25 16 6 C 0.56 12.41 7.77 86.79 0.67 13.08 16 7 O -0.57 -17.70 16.35 -3.90 -0.06 -17.76 16 8 N -0.71 -12.59 5.51 -465.97 -2.57 -15.16 16 9 C 0.13 2.89 5.60 86.38 0.48 3.38 16 10 C 0.05 1.05 5.07 86.30 0.44 1.49 16 11 N -0.54 -16.64 4.50 -927.03 -4.17 -20.81 16 12 C 0.02 0.74 8.96 127.69 1.14 1.89 16 13 C 0.06 1.97 5.45 85.56 0.47 2.44 16 14 C 0.44 20.66 7.47 87.66 0.66 21.32 16 15 O -0.62 -34.00 13.91 -3.07 -0.04 -34.04 16 16 N -0.57 -29.17 5.29 -306.97 -1.62 -30.79 16 17 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 18 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 20 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 21 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 C -0.11 -1.48 9.52 22.57 0.21 -1.27 16 26 C 0.07 0.99 7.23 22.34 0.16 1.15 16 27 F -0.14 -2.07 16.46 44.97 0.74 -1.33 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.23 8.09 -2.38 -0.02 0.21 16 30 H 0.07 0.49 7.63 -2.39 -0.02 0.47 16 31 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 32 H 0.14 2.18 7.65 -2.91 -0.02 2.16 16 33 H 0.42 4.52 6.51 -92.70 -0.60 3.91 16 34 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.06 1.56 6.55 -2.38 -0.02 1.54 16 36 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 37 H 0.10 1.70 7.93 -2.39 -0.02 1.69 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 2.29 5.82 -2.38 -0.01 2.28 16 40 H 0.07 2.14 6.47 -2.39 -0.02 2.12 16 41 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 42 H 0.11 3.20 7.93 -2.39 -0.02 3.18 16 43 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 44 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.16 1.32 6.40 -2.91 -0.02 1.30 16 Total: -1.00 -75.18 382.12 0.71 -74.47 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.29 Total: 29.08 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 6.42 Total: 20.30 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -8.08 Total: -115.78 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.11 Total: -51.80 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.74 Total: -1.33 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -75.18 0.71 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663226904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.466 kcal (2) G-P(sol) polarization free energy of solvation -75.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds