Wall clock time and date at job start Tue Mar 31 2020 20:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38455 * 119.83018 * 2 1 4 4 C 1.37851 * 120.22025 * 179.97438 * 3 2 1 5 5 C 1.39664 * 119.87913 * 0.02562 * 4 3 2 6 6 C 1.47686 * 120.16877 * 179.97438 * 5 4 3 7 7 O 1.21573 * 120.00206 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00054 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00219 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47338 * 179.97438 * 9 8 6 11 11 N 1.46898 * 109.47118 * 180.02562 * 10 9 8 12 12 C 1.46907 * 110.99807 * 66.04631 * 11 10 9 13 13 C 1.46894 * 111.00106 * 189.99958 * 11 10 9 14 14 C 1.50702 * 109.47305 * 170.00038 * 13 11 10 15 15 O 1.21291 * 119.99848 * 0.02562 * 14 13 11 16 16 N 1.34776 * 120.00184 * 180.02562 * 14 13 11 17 17 C 1.37091 * 120.00207 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00097 * 0.02562 * 17 16 14 19 19 C 1.38958 * 120.00119 * 180.02562 * 17 16 14 20 20 N 1.31407 * 119.99841 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99757 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46969 * 90.00426 * 21 19 17 23 23 H 1.48499 * 109.46831 * 209.99891 * 21 19 17 24 24 H 1.48496 * 109.47193 * 329.99895 * 21 19 17 25 25 C 1.39823 * 119.66290 * 359.97438 * 5 4 3 26 26 F 1.35104 * 120.10949 * 180.02562 * 25 5 4 27 27 C 1.38209 * 119.82798 * 180.27915 * 2 1 3 28 28 H 1.09011 * 109.47145 * 89.99791 * 1 2 3 29 29 H 1.08997 * 109.47432 * 209.99900 * 1 2 3 30 30 H 1.08999 * 109.47689 * 330.00291 * 1 2 3 31 31 H 1.08007 * 119.88731 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.06452 * 179.97438 * 4 3 2 33 33 H 0.96998 * 119.99572 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47253 * 300.00716 * 9 8 6 35 35 H 1.09002 * 109.46492 * 60.00030 * 9 8 6 36 36 H 1.08999 * 109.46739 * 300.00248 * 10 9 8 37 37 H 1.08997 * 109.46566 * 60.00597 * 10 9 8 38 38 H 1.09002 * 109.46724 * 60.00248 * 12 11 10 39 39 H 1.09006 * 109.46623 * 179.97438 * 12 11 10 40 40 H 1.08994 * 109.46990 * 300.00010 * 12 11 10 41 41 H 1.08996 * 109.47582 * 290.00344 * 13 11 10 42 42 H 1.09002 * 109.46858 * 50.00414 * 13 11 10 43 43 H 0.97007 * 120.00072 * 0.02562 * 16 14 13 44 44 H 0.97000 * 120.00070 * 180.02562 * 20 19 17 45 45 H 1.08001 * 119.94351 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2011 0.0000 4 6 3.5742 1.2105 0.0005 5 6 4.2782 0.0043 0.0005 6 6 5.7550 0.0068 0.0005 7 8 6.3648 -1.0449 0.0001 8 7 6.4269 1.1753 0.0011 9 6 7.8919 1.1779 0.0016 10 6 8.3994 2.6213 0.0015 11 7 9.8683 2.6238 0.0014 12 6 10.3957 2.0678 -1.2519 13 6 10.3924 3.9753 0.2394 14 6 11.8789 3.9031 0.4767 15 8 12.4460 2.8312 0.4497 16 7 12.5782 5.0295 0.7189 17 6 13.9303 4.9638 0.9353 18 1 14.4353 4.0094 0.9113 19 6 14.6512 6.1251 1.1856 20 7 15.9473 6.0621 1.3925 21 14 13.7776 7.7757 1.2279 22 1 13.3196 8.0580 2.6120 23 1 14.7132 8.8422 0.7890 24 1 12.6059 7.7392 0.3164 25 6 3.5776 -1.2058 0.0005 26 9 4.2495 -2.3779 0.0011 27 6 2.1945 -1.1990 -0.0058 28 1 -0.3634 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6511 2.1338 -0.0004 32 1 4.1089 2.1489 0.0001 33 1 5.9404 2.0144 0.0018 34 1 8.2558 0.6644 0.8915 35 1 8.2564 0.6649 -0.8884 36 1 8.0354 3.1342 -0.8887 37 1 8.0348 3.1345 0.8913 38 1 10.0451 2.6681 -2.0915 39 1 11.4853 2.0820 -1.2255 40 1 10.0480 1.0415 -1.3687 41 1 10.1934 4.6007 -0.6307 42 1 9.9053 4.4049 1.1148 43 1 12.1246 5.8867 0.7409 44 1 16.4505 6.8727 1.5676 45 1 1.6507 -2.1321 -0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663284363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:44 Heat of formation + Delta-G solvation = -75.709888 kcal Electronic energy + Delta-G solvation = -27575.804165 eV Core-core repulsion = 23315.295620 eV Total energy + Delta-G solvation = -4260.508545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.17518 -40.44637 -39.08808 -38.71869 -36.91731 -34.82586 -33.90116 -33.40493 -31.68728 -31.17710 -29.84090 -28.14734 -27.64085 -25.39574 -23.92315 -23.41387 -22.66724 -21.30628 -20.78801 -19.36810 -18.44606 -18.23994 -17.18611 -17.09235 -16.26076 -16.18304 -15.87041 -15.68740 -15.49974 -15.03271 -14.90320 -14.82848 -14.44602 -14.18667 -14.05241 -13.81047 -13.76888 -13.47919 -13.13746 -13.07784 -12.77667 -12.44901 -12.40480 -12.23671 -12.08983 -11.92833 -11.79570 -11.55970 -11.39191 -11.14178 -11.05464 -10.61095 -10.21347 -9.98163 -9.57276 -9.54880 -9.34393 -9.12285 -8.61473 -8.19105 -8.02789 -6.31443 -3.82876 0.19232 0.62787 2.41627 2.71479 3.00745 3.05538 3.13916 3.23147 3.67628 3.72295 3.93935 4.06026 4.09396 4.11694 4.32399 4.56358 4.63295 4.70926 4.77509 4.86052 4.96998 4.98034 5.04563 5.19830 5.29486 5.36561 5.43781 5.46701 5.48750 5.56686 5.58367 5.74959 5.79712 5.80290 5.83220 5.90024 5.95284 6.13149 6.25774 6.49541 7.05694 7.16323 7.21928 7.57667 7.91538 8.14242 8.59626 8.94985 9.41812 9.82719 10.81689 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.026061 B = 0.001713 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.164010 B =16345.117030 C =17207.869209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.032 4.032 3 C -0.141 4.141 4 C -0.053 4.053 5 C -0.179 4.179 6 C 0.556 3.444 7 O -0.520 6.520 8 N -0.723 5.723 9 C 0.122 3.878 10 C 0.045 3.955 11 N -0.515 5.515 12 C 0.016 3.984 13 C 0.044 3.956 14 C 0.452 3.548 15 O -0.557 6.557 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.165 3.835 26 F -0.113 7.113 27 C -0.168 4.168 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.397 0.603 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.016 0.984 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.782 -5.156 -4.378 35.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.032 4.032 3 C -0.159 4.159 4 C -0.072 4.072 5 C -0.183 4.183 6 C 0.343 3.657 7 O -0.397 6.397 8 N -0.376 5.376 9 C -0.002 4.002 10 C -0.084 4.084 11 N -0.239 5.239 12 C -0.131 4.131 13 C -0.087 4.087 14 C 0.238 3.762 15 O -0.439 6.439 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.138 0.862 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C 0.145 3.855 26 F -0.091 7.091 27 C -0.187 4.187 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.232 0.768 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.035 0.965 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -33.498 -6.890 -3.966 34.429 hybrid contribution -0.885 2.274 -0.574 2.506 sum -34.384 -4.617 -4.540 34.988 Atomic orbital electron populations 1.20911 0.89992 1.03656 1.03162 1.19981 0.96758 0.92115 0.94355 1.21051 0.93759 0.98191 1.02921 1.21205 0.94419 0.96459 0.95111 1.20068 0.93923 0.93426 1.10854 1.17950 0.86454 0.84124 0.77216 1.90876 1.69403 1.30900 1.48490 1.45786 1.07894 1.08161 1.75774 1.21381 0.77615 0.97311 1.03873 1.22252 0.89351 0.95613 1.01207 1.61424 1.04571 1.21409 1.36493 1.22657 1.04039 0.98774 0.87653 1.21900 0.95925 0.89580 1.01295 1.19604 0.87653 0.84880 0.84105 1.90540 1.70689 1.28142 1.54495 1.42202 1.09024 1.06930 1.64893 1.19435 0.80874 0.97533 1.45505 0.86238 1.25037 0.95468 0.98060 0.97587 1.69619 1.05877 1.29227 1.47371 0.86670 0.79611 0.84257 0.78820 1.19610 1.20208 1.19579 1.17697 0.89688 0.80907 0.97244 1.91618 1.80379 1.44538 1.92584 1.21057 0.91749 0.99845 1.06044 0.90217 0.90846 0.90686 0.84576 0.84563 0.76767 0.89908 0.90860 0.94475 0.90205 0.96504 0.88272 0.91616 0.93221 0.89172 0.79754 0.91617 0.83984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.30 10.00 36.01 0.36 0.06 16 2 C -0.03 -0.16 5.88 -104.55 -0.62 -0.78 16 3 C -0.14 -0.67 9.67 -39.64 -0.38 -1.06 16 4 C -0.05 -0.32 9.54 -39.19 -0.37 -0.69 16 5 C -0.18 -1.71 5.88 -104.91 -0.62 -2.33 16 6 C 0.56 6.79 7.77 -12.40 -0.10 6.69 16 7 O -0.52 -8.69 15.34 5.30 0.08 -8.61 16 8 N -0.72 -6.90 5.51 -61.30 -0.34 -7.24 16 9 C 0.12 1.42 5.60 -4.04 -0.02 1.39 16 10 C 0.04 0.49 5.07 -3.82 -0.02 0.47 16 11 N -0.51 -7.97 4.50 -244.37 -1.10 -9.07 16 12 C 0.02 0.26 8.96 60.07 0.54 0.79 16 13 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 14 C 0.45 10.11 7.47 -10.98 -0.08 10.03 16 15 O -0.56 -14.75 13.91 5.55 0.08 -14.68 16 16 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 17 C -0.30 -8.56 10.16 -14.93 -0.15 -8.72 16 18 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 21 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 25 C 0.17 1.67 7.29 -38.96 -0.28 1.39 16 26 F -0.11 -1.47 15.55 2.25 0.04 -1.43 16 27 C -0.17 -1.17 9.66 -39.56 -0.38 -1.55 16 28 H 0.08 0.15 8.14 -51.92 -0.42 -0.27 16 29 H 0.07 0.15 8.08 -51.93 -0.42 -0.27 16 30 H 0.07 0.12 8.08 -51.93 -0.42 -0.30 16 31 H 0.14 0.31 8.06 -52.48 -0.42 -0.12 16 32 H 0.14 0.44 6.41 -52.48 -0.34 0.10 16 33 H 0.40 2.39 6.51 -40.82 -0.27 2.12 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 36 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.10 1.91 5.82 -51.93 -0.30 1.61 16 40 H 0.07 0.94 6.47 -51.93 -0.34 0.60 16 41 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.09 1.24 7.93 -51.93 -0.41 0.82 16 43 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -36.41 378.26 -7.78 -44.20 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.99 Total: 8.11 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.25 Total: 7.42 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.72 Total: -55.12 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.16 Total: -23.28 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.41 -7.78 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663284363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.514 kcal (2) G-P(sol) polarization free energy of solvation -36.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds