Wall clock time and date at job start Tue Mar 31 2020 20:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38455 * 119.83018 * 2 1 4 4 C 1.37851 * 120.22025 * 179.97438 * 3 2 1 5 5 C 1.39664 * 119.87913 * 0.02562 * 4 3 2 6 6 C 1.47686 * 120.16877 * 179.97438 * 5 4 3 7 7 O 1.21573 * 120.00206 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00054 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00219 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47338 * 179.97438 * 9 8 6 11 11 N 1.46898 * 109.47118 * 180.02562 * 10 9 8 12 12 C 1.46907 * 110.99807 * 66.04631 * 11 10 9 13 13 C 1.46894 * 111.00106 * 189.99958 * 11 10 9 14 14 C 1.50702 * 109.47305 * 170.00038 * 13 11 10 15 15 O 1.21291 * 119.99848 * 0.02562 * 14 13 11 16 16 N 1.34776 * 120.00184 * 180.02562 * 14 13 11 17 17 C 1.37091 * 120.00207 * 179.97438 * 16 14 13 18 18 H 1.08004 * 120.00097 * 0.02562 * 17 16 14 19 19 C 1.38958 * 120.00119 * 180.02562 * 17 16 14 20 20 N 1.31407 * 119.99841 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99757 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46969 * 90.00426 * 21 19 17 23 23 H 1.48499 * 109.46831 * 209.99891 * 21 19 17 24 24 H 1.48496 * 109.47193 * 329.99895 * 21 19 17 25 25 C 1.39823 * 119.66290 * 359.97438 * 5 4 3 26 26 F 1.35104 * 120.10949 * 180.02562 * 25 5 4 27 27 C 1.38209 * 119.82798 * 180.27915 * 2 1 3 28 28 H 1.09011 * 109.47145 * 89.99791 * 1 2 3 29 29 H 1.08997 * 109.47432 * 209.99900 * 1 2 3 30 30 H 1.08999 * 109.47689 * 330.00291 * 1 2 3 31 31 H 1.08007 * 119.88731 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.06452 * 179.97438 * 4 3 2 33 33 H 0.96998 * 119.99572 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47253 * 300.00716 * 9 8 6 35 35 H 1.09002 * 109.46492 * 60.00030 * 9 8 6 36 36 H 1.08999 * 109.46739 * 300.00248 * 10 9 8 37 37 H 1.08997 * 109.46566 * 60.00597 * 10 9 8 38 38 H 1.09002 * 109.46724 * 60.00248 * 12 11 10 39 39 H 1.09006 * 109.46623 * 179.97438 * 12 11 10 40 40 H 1.08994 * 109.46990 * 300.00010 * 12 11 10 41 41 H 1.08996 * 109.47582 * 290.00344 * 13 11 10 42 42 H 1.09002 * 109.46858 * 50.00414 * 13 11 10 43 43 H 0.97007 * 120.00072 * 0.02562 * 16 14 13 44 44 H 0.97000 * 120.00070 * 180.02562 * 20 19 17 45 45 H 1.08001 * 119.94351 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2011 0.0000 4 6 3.5742 1.2105 0.0005 5 6 4.2782 0.0043 0.0005 6 6 5.7550 0.0068 0.0005 7 8 6.3648 -1.0449 0.0001 8 7 6.4269 1.1753 0.0011 9 6 7.8919 1.1779 0.0016 10 6 8.3994 2.6213 0.0015 11 7 9.8683 2.6238 0.0014 12 6 10.3957 2.0678 -1.2519 13 6 10.3924 3.9753 0.2394 14 6 11.8789 3.9031 0.4767 15 8 12.4460 2.8312 0.4497 16 7 12.5782 5.0295 0.7189 17 6 13.9303 4.9638 0.9353 18 1 14.4353 4.0094 0.9113 19 6 14.6512 6.1251 1.1856 20 7 15.9473 6.0621 1.3925 21 14 13.7776 7.7757 1.2279 22 1 13.3196 8.0580 2.6120 23 1 14.7132 8.8422 0.7890 24 1 12.6059 7.7392 0.3164 25 6 3.5776 -1.2058 0.0005 26 9 4.2495 -2.3779 0.0011 27 6 2.1945 -1.1990 -0.0058 28 1 -0.3634 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6511 2.1338 -0.0004 32 1 4.1089 2.1489 0.0001 33 1 5.9404 2.0144 0.0018 34 1 8.2558 0.6644 0.8915 35 1 8.2564 0.6649 -0.8884 36 1 8.0354 3.1342 -0.8887 37 1 8.0348 3.1345 0.8913 38 1 10.0451 2.6681 -2.0915 39 1 11.4853 2.0820 -1.2255 40 1 10.0480 1.0415 -1.3687 41 1 10.1934 4.6007 -0.6307 42 1 9.9053 4.4049 1.1148 43 1 12.1246 5.8867 0.7409 44 1 16.4505 6.8727 1.5676 45 1 1.6507 -2.1321 -0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663284363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:43 Heat of formation + Delta-G solvation = -104.985220 kcal Electronic energy + Delta-G solvation = -27577.073639 eV Core-core repulsion = 23315.295620 eV Total energy + Delta-G solvation = -4261.778018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.96966 -41.22259 -40.49540 -39.60305 -38.21467 -36.08666 -35.63219 -33.92650 -33.73645 -31.68513 -30.82686 -29.29648 -28.33180 -26.95211 -25.29742 -23.88990 -23.41510 -22.33358 -21.58835 -21.22477 -20.16339 -19.15056 -17.92951 -17.79478 -17.66238 -17.06875 -16.93003 -16.78089 -16.67682 -16.29152 -16.10393 -15.57140 -15.45685 -15.26488 -15.08453 -14.82676 -14.52317 -14.43710 -14.36834 -14.30965 -14.15592 -13.71220 -13.12263 -13.08342 -12.97607 -12.77226 -12.69148 -12.57769 -12.55215 -12.39118 -12.29111 -12.13131 -11.95790 -11.45456 -11.16243 -10.36972 -10.30017 -10.21536 -10.00413 -9.69737 -9.24085 -8.39278 -6.00337 -0.38394 0.13812 1.31383 1.38039 1.46676 1.69430 1.85531 1.98986 2.25341 2.61798 2.73520 3.13204 3.16579 3.27411 3.53230 3.63471 3.84123 3.87199 4.05148 4.12947 4.16385 4.20593 4.35825 4.45094 4.46207 4.60092 4.61892 4.62812 4.65152 4.83156 4.87369 4.91238 4.97650 5.02889 5.11500 5.20633 5.25062 5.27867 5.44767 5.54851 5.79664 5.88247 5.99826 6.14404 6.41088 6.62168 6.91176 7.09752 7.42485 8.01093 8.78600 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.026061 B = 0.001713 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.164010 B =16345.117030 C =17207.869209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.132 4.132 4 C -0.044 4.044 5 C -0.202 4.202 6 C 0.550 3.450 7 O -0.580 6.580 8 N -0.702 5.702 9 C 0.127 3.873 10 C 0.055 3.945 11 N -0.544 5.544 12 C 0.023 3.977 13 C 0.058 3.942 14 C 0.448 3.552 15 O -0.609 6.609 16 N -0.591 5.591 17 C -0.329 4.329 18 H 0.052 0.948 19 C -0.017 4.017 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.257 1.257 23 H -0.277 1.277 24 H -0.228 1.228 25 C 0.126 3.874 26 F -0.143 7.143 27 C -0.173 4.173 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.419 0.581 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.390 0.610 44 H 0.278 0.722 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.236 -0.724 -4.744 40.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.025 4.025 3 C -0.150 4.150 4 C -0.062 4.062 5 C -0.206 4.206 6 C 0.339 3.661 7 O -0.461 6.461 8 N -0.356 5.356 9 C 0.003 3.997 10 C -0.073 4.073 11 N -0.269 5.269 12 C -0.125 4.125 13 C -0.073 4.073 14 C 0.236 3.764 15 O -0.493 6.493 16 N -0.233 5.233 17 C -0.458 4.458 18 H 0.070 0.930 19 C -0.216 4.216 20 N -0.578 5.578 21 Si 0.787 3.213 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.151 1.151 25 C 0.105 3.895 26 F -0.122 7.122 27 C -0.191 4.191 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.191 0.809 32 H 0.186 0.814 33 H 0.258 0.742 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.146 0.854 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -39.014 -2.422 -4.340 39.329 hybrid contribution 0.754 0.760 -0.465 1.167 sum -38.260 -1.662 -4.806 38.597 Atomic orbital electron populations 1.21008 0.87712 1.04800 1.04158 1.20413 0.98337 0.91540 0.92250 1.21528 0.93323 0.99429 1.00730 1.21566 0.95171 0.96020 0.93470 1.20018 0.92279 0.94805 1.13461 1.18488 0.87759 0.83794 0.76070 1.90841 1.70783 1.33064 1.51418 1.45523 1.06990 1.08526 1.74544 1.21160 0.78790 0.97969 1.01788 1.22247 0.86165 0.94936 1.03926 1.61271 1.07560 1.21496 1.36609 1.22469 1.01193 0.99827 0.89018 1.21837 0.90430 0.90642 1.04375 1.20997 0.90536 0.83575 0.81289 1.90536 1.72690 1.30235 1.55795 1.42008 1.07242 1.08443 1.65645 1.18992 0.83394 0.95605 1.47801 0.92986 1.26161 0.96161 1.03263 0.95973 1.69816 1.08391 1.31103 1.48454 0.85330 0.79358 0.76257 0.80325 1.18100 1.20242 1.15075 1.18228 0.91049 0.80381 0.99793 1.91532 1.81202 1.46218 1.93227 1.21269 0.90476 1.01486 1.05889 0.89090 0.90470 0.88880 0.80850 0.81356 0.74241 0.92764 0.92564 0.91331 0.87535 0.94040 0.92832 0.91289 0.89681 0.85441 0.77393 0.91215 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.14 10.00 71.24 0.71 0.57 16 2 C -0.02 -0.18 5.88 -19.82 -0.12 -0.30 16 3 C -0.13 -0.67 9.67 22.23 0.22 -0.46 16 4 C -0.04 -0.37 9.54 22.52 0.21 -0.16 16 5 C -0.20 -3.75 5.88 -20.05 -0.12 -3.87 16 6 C 0.55 13.65 7.77 86.74 0.67 14.32 16 7 O -0.58 -20.87 15.34 -3.94 -0.06 -20.93 16 8 N -0.70 -12.18 5.51 -466.13 -2.57 -14.75 16 9 C 0.13 2.85 5.60 86.38 0.48 3.33 16 10 C 0.05 0.99 5.07 86.30 0.44 1.43 16 11 N -0.54 -15.69 4.50 -927.05 -4.17 -19.86 16 12 C 0.02 0.70 8.96 127.69 1.14 1.85 16 13 C 0.06 1.65 5.45 85.56 0.47 2.12 16 14 C 0.45 19.94 7.47 87.66 0.66 20.59 16 15 O -0.61 -33.87 13.91 -3.07 -0.04 -33.91 16 16 N -0.59 -27.41 5.09 -306.98 -1.56 -28.97 16 17 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 18 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 19 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 20 N -0.94 -56.73 13.96 21.67 0.30 -56.43 16 21 Si 0.97 38.07 27.74 68.60 1.90 39.97 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 23 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.23 -7.34 6.52 99.48 0.65 -6.69 16 25 C 0.13 2.65 7.29 22.67 0.17 2.82 16 26 F -0.14 -4.13 15.55 44.97 0.70 -3.43 16 27 C -0.17 -2.27 9.66 22.28 0.22 -2.05 16 28 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 29 H 0.08 0.07 8.08 -2.39 -0.02 0.05 16 30 H 0.09 -0.17 8.08 -2.39 -0.02 -0.19 16 31 H 0.17 -0.35 8.06 -2.91 -0.02 -0.37 16 32 H 0.17 0.19 6.41 -2.91 -0.02 0.17 16 33 H 0.42 3.38 6.51 -92.71 -0.60 2.78 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.46 6.55 -2.39 -0.02 1.44 16 36 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 37 H 0.11 1.42 7.93 -2.39 -0.02 1.40 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 2.15 5.82 -2.38 -0.01 2.14 16 40 H 0.07 2.02 6.47 -2.39 -0.02 2.00 16 41 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 42 H 0.13 2.76 7.93 -2.39 -0.02 2.74 16 43 H 0.39 14.64 5.76 -92.70 -0.53 14.10 16 44 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -92.29 378.26 0.82 -91.47 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.15 Total: 25.55 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 6.47 Total: 21.29 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -8.00 Total: -120.01 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.10 Total: -54.85 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.70 Total: -3.43 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.97 kcal Total: -92.29 0.82 -91.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663284363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -92.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds