Wall clock time and date at job start Tue Mar 31 2020 20:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29510 * 121.53296 * 2 1 4 4 S 1.69477 * 107.84602 * 180.21582 * 3 2 1 5 5 C 1.72013 * 96.02545 * 359.74742 * 4 3 2 6 6 C 1.37895 * 105.36528 * 0.02562 * 5 4 3 7 7 C 1.47350 * 123.08827 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00035 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99724 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99859 * 174.07465 * 9 7 6 11 11 C 1.53001 * 109.47231 * 51.12773 * 10 9 7 12 12 N 1.46497 * 109.46937 * 54.13272 * 11 10 9 13 13 C 1.36936 * 120.00305 * 183.50419 * 12 11 10 14 14 H 1.08002 * 119.99961 * 0.02562 * 13 12 11 15 15 C 1.38817 * 120.00211 * 179.97438 * 13 12 11 16 16 N 1.31621 * 120.00088 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99851 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47363 * 90.00274 * 17 15 13 19 19 H 1.48504 * 109.47249 * 210.00183 * 17 15 13 20 20 H 1.48505 * 109.47064 * 329.99946 * 17 15 13 21 21 C 1.53001 * 109.47121 * 171.13150 * 10 9 7 22 22 C 1.52993 * 109.47229 * 60.00149 * 21 10 9 23 23 C 1.53000 * 109.47433 * 59.99948 * 22 21 10 24 24 C 1.53001 * 109.46955 * 300.00219 * 23 22 21 25 25 C 1.52993 * 109.47229 * 59.99656 * 24 23 22 26 26 H 1.09005 * 109.47205 * 60.00332 * 25 24 23 27 27 C 1.53001 * 109.47229 * 180.02562 * 25 24 23 28 28 H 1.08996 * 109.46574 * 270.24812 * 1 2 3 29 29 H 1.08999 * 109.46527 * 30.24562 * 1 2 3 30 30 H 1.09000 * 109.46929 * 150.24541 * 1 2 3 31 31 H 1.08007 * 127.31871 * 180.02562 * 5 4 3 32 32 H 0.97003 * 119.99843 * 353.80360 * 9 7 6 33 33 H 1.09002 * 109.47302 * 174.13289 * 11 10 9 34 34 H 1.09000 * 109.46967 * 294.13669 * 11 10 9 35 35 H 0.97005 * 120.00026 * 3.51008 * 12 11 10 36 36 H 0.96998 * 120.00171 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.46756 * 180.02562 * 21 10 9 38 38 H 1.09001 * 109.46616 * 299.99737 * 21 10 9 39 39 H 1.09001 * 109.47131 * 180.02562 * 22 21 10 40 40 H 1.09005 * 109.47205 * 299.99668 * 22 21 10 41 41 H 1.08996 * 109.46882 * 60.00179 * 23 22 21 42 42 H 1.08999 * 109.47224 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46616 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.46756 * 299.99713 * 24 23 22 45 45 H 1.08998 * 109.47301 * 172.02609 * 27 25 24 46 46 H 1.09001 * 109.47180 * 292.02264 * 27 25 24 47 47 H 1.08997 * 109.47117 * 52.01704 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8310 0.7029 -0.0061 5 6 3.6017 -1.0019 -0.0012 6 6 2.2352 -1.1868 0.0045 7 6 1.6036 -2.5180 0.0095 8 8 0.3914 -2.6159 0.0139 9 7 2.3693 -3.6271 0.0092 10 6 1.7473 -4.9466 0.1451 11 6 0.6158 -5.0846 -0.8754 12 7 1.1306 -4.7991 -2.2169 13 6 0.2793 -4.7903 -3.2895 14 1 -0.7717 -4.9936 -3.1464 15 6 0.7671 -4.5192 -4.5605 16 7 2.0479 -4.2710 -4.7349 17 14 -0.3943 -4.5067 -6.0235 18 1 -0.9394 -3.1381 -6.2111 19 1 0.3437 -4.9173 -7.2450 20 1 -1.5106 -5.4547 -5.7775 21 6 2.7954 -6.0327 -0.1054 22 6 3.9269 -5.8947 0.9152 23 6 3.3608 -6.0485 2.3283 24 6 2.3127 -4.9624 2.5787 25 6 1.1812 -5.1004 1.5582 26 1 0.7184 -6.0821 1.6593 27 6 0.1334 -4.0139 1.8083 28 1 -0.3632 0.0045 1.0276 29 1 -0.3632 0.8878 -0.5177 30 1 -0.3633 -0.8922 -0.5100 31 1 4.3657 -1.7654 -0.0023 32 1 3.3318 -3.5520 -0.0850 33 1 0.2219 -6.1006 -0.8460 34 1 -0.1794 -4.3794 -0.6337 35 1 2.0745 -4.6162 -2.3454 36 1 2.3886 -4.0812 -5.6230 37 1 2.3325 -7.0144 -0.0047 38 1 3.1987 -5.9231 -1.1121 39 1 4.6738 -6.6682 0.7364 40 1 4.3897 -4.9130 0.8140 41 1 2.8981 -7.0302 2.4294 42 1 4.1668 -5.9497 3.0553 43 1 1.9097 -5.0717 3.5856 44 1 2.7755 -3.9807 2.4776 45 1 -0.5978 -4.0214 1.0001 46 1 -0.3702 -4.2060 2.7557 47 1 0.6219 -3.0402 1.8475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753532607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:32 Heat of formation + Delta-G solvation = 25.767569 kcal Electronic energy + Delta-G solvation = -29368.055299 eV Core-core repulsion = 25678.160323 eV Total energy + Delta-G solvation = -3689.894976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96845 -39.11990 -37.17470 -34.60700 -33.48054 -32.55125 -31.80404 -30.65351 -29.36825 -29.24545 -26.36405 -24.98077 -24.43511 -22.96223 -21.69359 -21.19745 -20.46868 -19.40495 -18.85925 -18.11111 -17.14391 -16.85615 -15.75297 -15.19826 -14.85278 -14.74179 -14.29576 -14.25348 -13.97742 -13.71270 -13.59134 -13.40775 -13.12785 -13.03250 -12.52317 -12.44980 -12.23341 -12.05366 -11.81970 -11.75430 -11.42784 -11.35490 -11.23695 -11.15057 -10.86094 -10.77128 -10.75430 -10.62977 -10.37297 -10.09217 -9.99980 -9.67853 -9.65253 -9.55094 -9.12728 -8.64837 -8.58113 -8.30504 -6.75175 -5.68634 -2.93252 0.49511 1.40372 1.79201 2.03319 3.45772 3.48768 3.54210 3.54982 3.67029 4.51536 4.66001 4.81017 4.84826 4.87410 5.01085 5.11912 5.23477 5.27011 5.35789 5.52715 5.55996 5.59059 5.62965 5.67546 5.71666 5.78452 5.80564 5.90642 5.99172 6.05934 6.11200 6.21111 6.25386 6.26722 6.35650 6.38293 6.41361 6.51208 6.66350 6.67649 6.78385 6.82539 7.09011 7.25520 7.79744 7.92881 8.51339 8.66925 9.62730 10.22230 10.57170 11.54756 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007983 B = 0.005834 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.773048 B = 4798.117132 C = 6778.988969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.168 3.832 3 N -0.473 5.473 4 S 0.266 5.734 5 C -0.175 4.175 6 C -0.196 4.196 7 C 0.587 3.413 8 O -0.500 6.500 9 N -0.701 5.701 10 C 0.182 3.818 11 C 0.132 3.868 12 N -0.722 5.722 13 C -0.222 4.222 14 H 0.068 0.932 15 C -0.018 4.018 16 N -0.938 5.938 17 Si 0.903 3.097 18 H -0.292 1.292 19 H -0.294 1.294 20 H -0.283 1.283 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.092 4.092 26 H 0.074 0.926 27 C -0.144 4.144 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.187 0.813 32 H 0.391 0.609 33 H 0.014 0.986 34 H 0.068 0.932 35 H 0.380 0.620 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.027 0.973 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 2.535 16.634 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.009 4.009 3 N -0.293 5.293 4 S 0.422 5.578 5 C -0.325 4.325 6 C -0.217 4.217 7 C 0.372 3.628 8 O -0.377 6.377 9 N -0.353 5.353 10 C 0.097 3.903 11 C 0.005 3.995 12 N -0.366 5.366 13 C -0.354 4.354 14 H 0.085 0.915 15 C -0.213 4.213 16 N -0.588 5.588 17 Si 0.735 3.265 18 H -0.220 1.220 19 H -0.220 1.220 20 H -0.209 1.209 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.112 4.112 26 H 0.092 0.908 27 C -0.201 4.201 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.204 0.796 32 H 0.226 0.774 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.214 0.786 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.046 0.954 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.776 4.512 16.553 18.103 hybrid contribution -0.308 -1.579 -1.119 1.960 sum 5.468 2.933 15.434 16.635 Atomic orbital electron populations 1.20958 0.85349 1.05626 1.03802 1.21482 0.99620 0.86712 0.93100 1.76479 0.99943 1.26301 1.26613 1.83897 1.11364 0.96252 1.66299 1.27324 0.99484 1.04216 1.01437 1.20587 0.92013 0.96786 1.12340 1.16900 0.86640 0.82468 0.76839 1.90715 1.13330 1.85710 1.47986 1.45644 1.09685 1.05419 1.74507 1.20609 0.93856 0.81176 0.94707 1.21345 0.94933 0.98249 0.85003 1.42175 1.08384 1.85080 1.00981 1.19209 0.91173 1.38706 0.86311 0.91450 1.24645 0.95959 1.03338 0.97334 1.69640 1.11812 1.55837 1.21470 0.86240 0.79886 0.77576 0.82845 1.21966 1.22023 1.20901 1.21800 0.95601 0.98554 0.99922 1.21558 0.97904 1.01352 0.94868 1.21545 0.98218 0.99261 0.96577 1.21556 0.96029 0.98853 0.98357 1.21490 0.95863 1.00141 0.93719 0.90810 1.22414 0.99156 0.98020 1.00491 0.90137 0.91171 0.86374 0.79597 0.77415 0.96883 0.91428 0.78626 0.93877 0.90564 0.90139 0.91946 0.92517 0.92062 0.92550 0.92516 0.92198 0.89675 0.95395 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.51 36.01 0.34 -1.04 16 2 C 0.17 2.61 6.75 -83.20 -0.56 2.04 16 3 N -0.47 -7.18 11.97 32.50 0.39 -6.79 16 4 S 0.27 3.21 23.69 -107.50 -2.55 0.67 16 5 C -0.18 -2.11 10.79 30.61 0.33 -1.78 16 6 C -0.20 -2.92 5.86 -105.95 -0.62 -3.55 16 7 C 0.59 9.52 5.83 -12.55 -0.07 9.45 16 8 O -0.50 -9.06 7.20 5.27 0.04 -9.02 16 9 N -0.70 -10.16 3.54 -48.69 -0.17 -10.34 16 10 C 0.18 2.74 0.32 -131.82 -0.04 2.70 16 11 C 0.13 2.65 4.44 -4.04 -0.02 2.63 16 12 N -0.72 -17.68 5.17 -59.91 -0.31 -17.99 16 13 C -0.22 -6.24 9.99 -15.06 -0.15 -6.39 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 16 N -0.94 -28.15 13.06 55.49 0.72 -27.43 16 17 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 18 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 19 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 C -0.12 -1.66 4.70 -26.73 -0.13 -1.79 16 22 C -0.12 -1.26 5.75 -26.73 -0.15 -1.41 16 23 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 24 C -0.11 -1.20 5.04 -26.73 -0.13 -1.34 16 25 C -0.09 -1.21 2.07 -90.62 -0.19 -1.40 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 C -0.14 -2.06 7.29 37.16 0.27 -1.79 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.12 1.96 5.63 -51.93 -0.29 1.67 16 31 H 0.19 1.64 7.22 -52.48 -0.38 1.26 16 32 H 0.39 4.91 5.68 -40.82 -0.23 4.68 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 1.46 4.24 -51.93 -0.22 1.24 16 35 H 0.38 9.64 6.50 -40.82 -0.27 9.38 16 36 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.31 7.17 -51.93 -0.37 0.94 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.56 6.70 -51.93 -0.35 0.21 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 45 H 0.08 1.42 5.04 -51.93 -0.26 1.15 16 46 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.89 5.32 -51.93 -0.28 0.61 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -31.68 363.91 -9.61 -41.29 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -6.81 Total: 11.81 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.38 Total: -5.60 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.63 Total: -62.54 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.04 Total: -9.02 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.55 Total: 0.67 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.68 -9.61 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753532607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.058 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds