Wall clock time and date at job start Tue Mar 31 2020 20:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29510 * 121.53296 * 2 1 4 4 S 1.69477 * 107.84602 * 180.21582 * 3 2 1 5 5 C 1.72013 * 96.02545 * 359.74742 * 4 3 2 6 6 C 1.37895 * 105.36528 * 0.02562 * 5 4 3 7 7 C 1.47350 * 123.08827 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00035 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99724 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99859 * 174.07465 * 9 7 6 11 11 C 1.53001 * 109.47231 * 51.12773 * 10 9 7 12 12 N 1.46497 * 109.46937 * 54.13272 * 11 10 9 13 13 C 1.36936 * 120.00305 * 183.50419 * 12 11 10 14 14 H 1.08002 * 119.99961 * 0.02562 * 13 12 11 15 15 C 1.38817 * 120.00211 * 179.97438 * 13 12 11 16 16 N 1.31621 * 120.00088 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99851 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47363 * 90.00274 * 17 15 13 19 19 H 1.48504 * 109.47249 * 210.00183 * 17 15 13 20 20 H 1.48505 * 109.47064 * 329.99946 * 17 15 13 21 21 C 1.53001 * 109.47121 * 171.13150 * 10 9 7 22 22 C 1.52993 * 109.47229 * 60.00149 * 21 10 9 23 23 C 1.53000 * 109.47433 * 59.99948 * 22 21 10 24 24 C 1.53001 * 109.46955 * 300.00219 * 23 22 21 25 25 C 1.52993 * 109.47229 * 59.99656 * 24 23 22 26 26 H 1.09005 * 109.47205 * 60.00332 * 25 24 23 27 27 C 1.53001 * 109.47229 * 180.02562 * 25 24 23 28 28 H 1.08996 * 109.46574 * 270.24812 * 1 2 3 29 29 H 1.08999 * 109.46527 * 30.24562 * 1 2 3 30 30 H 1.09000 * 109.46929 * 150.24541 * 1 2 3 31 31 H 1.08007 * 127.31871 * 180.02562 * 5 4 3 32 32 H 0.97003 * 119.99843 * 353.80360 * 9 7 6 33 33 H 1.09002 * 109.47302 * 174.13289 * 11 10 9 34 34 H 1.09000 * 109.46967 * 294.13669 * 11 10 9 35 35 H 0.97005 * 120.00026 * 3.51008 * 12 11 10 36 36 H 0.96998 * 120.00171 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.46756 * 180.02562 * 21 10 9 38 38 H 1.09001 * 109.46616 * 299.99737 * 21 10 9 39 39 H 1.09001 * 109.47131 * 180.02562 * 22 21 10 40 40 H 1.09005 * 109.47205 * 299.99668 * 22 21 10 41 41 H 1.08996 * 109.46882 * 60.00179 * 23 22 21 42 42 H 1.08999 * 109.47224 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.46616 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.46756 * 299.99713 * 24 23 22 45 45 H 1.08998 * 109.47301 * 172.02609 * 27 25 24 46 46 H 1.09001 * 109.47180 * 292.02264 * 27 25 24 47 47 H 1.08997 * 109.47117 * 52.01704 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8310 0.7029 -0.0061 5 6 3.6017 -1.0019 -0.0012 6 6 2.2352 -1.1868 0.0045 7 6 1.6036 -2.5180 0.0095 8 8 0.3914 -2.6159 0.0139 9 7 2.3693 -3.6271 0.0092 10 6 1.7473 -4.9466 0.1451 11 6 0.6158 -5.0846 -0.8754 12 7 1.1306 -4.7991 -2.2169 13 6 0.2793 -4.7903 -3.2895 14 1 -0.7717 -4.9936 -3.1464 15 6 0.7671 -4.5192 -4.5605 16 7 2.0479 -4.2710 -4.7349 17 14 -0.3943 -4.5067 -6.0235 18 1 -0.9394 -3.1381 -6.2111 19 1 0.3437 -4.9173 -7.2450 20 1 -1.5106 -5.4547 -5.7775 21 6 2.7954 -6.0327 -0.1054 22 6 3.9269 -5.8947 0.9152 23 6 3.3608 -6.0485 2.3283 24 6 2.3127 -4.9624 2.5787 25 6 1.1812 -5.1004 1.5582 26 1 0.7184 -6.0821 1.6593 27 6 0.1334 -4.0139 1.8083 28 1 -0.3632 0.0045 1.0276 29 1 -0.3632 0.8878 -0.5177 30 1 -0.3633 -0.8922 -0.5100 31 1 4.3657 -1.7654 -0.0023 32 1 3.3318 -3.5520 -0.0850 33 1 0.2219 -6.1006 -0.8460 34 1 -0.1794 -4.3794 -0.6337 35 1 2.0745 -4.6162 -2.3454 36 1 2.3886 -4.0812 -5.6230 37 1 2.3325 -7.0144 -0.0047 38 1 3.1987 -5.9231 -1.1121 39 1 4.6738 -6.6682 0.7364 40 1 4.3897 -4.9130 0.8140 41 1 2.8981 -7.0302 2.4294 42 1 4.1668 -5.9497 3.0553 43 1 1.9097 -5.0717 3.5856 44 1 2.7755 -3.9807 2.4776 45 1 -0.5978 -4.0214 1.0001 46 1 -0.3702 -4.2060 2.7557 47 1 0.6219 -3.0402 1.8475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753532607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:31 Heat of formation + Delta-G solvation = 6.192523 kcal Electronic energy + Delta-G solvation = -29368.904136 eV Core-core repulsion = 25678.160323 eV Total energy + Delta-G solvation = -3690.743814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16125 -40.21900 -38.32291 -36.32773 -34.80712 -33.74690 -33.17960 -32.15960 -30.64408 -30.45479 -27.69422 -26.45631 -25.54181 -24.67872 -22.90188 -22.34476 -21.54403 -20.50688 -20.06717 -19.28930 -19.02532 -18.01377 -17.01253 -16.75693 -16.08547 -15.92112 -15.83730 -15.34068 -15.21232 -14.94604 -14.81655 -14.72328 -14.64625 -14.26386 -13.95802 -13.65050 -13.35834 -13.24803 -13.16857 -12.93210 -12.80610 -12.72430 -12.60458 -12.43842 -12.29900 -12.27830 -12.05864 -11.81754 -11.78298 -11.67977 -11.30929 -11.01323 -10.97504 -10.77545 -10.64557 -10.22382 -9.65887 -9.52121 -8.81247 -7.90547 -5.13270 -0.54328 0.40256 0.73158 0.86980 1.44252 1.45994 1.53405 2.26936 2.47373 2.58304 3.43211 3.52281 3.72634 3.81814 3.88481 3.96790 4.04908 4.16006 4.24150 4.35261 4.42941 4.43881 4.55697 4.60032 4.64237 4.69814 4.74872 4.75394 4.82325 4.97516 5.00289 5.08405 5.17700 5.21152 5.26182 5.28821 5.34942 5.41048 5.44966 5.49972 5.53806 5.59876 5.66109 5.81770 5.86093 6.33105 6.75654 7.40318 7.47463 8.19254 8.45296 9.32580 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007983 B = 0.005834 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.773048 B = 4798.117132 C = 6778.988969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.154 3.846 3 N -0.505 5.505 4 S 0.321 5.679 5 C -0.158 4.158 6 C -0.228 4.228 7 C 0.581 3.419 8 O -0.527 6.527 9 N -0.694 5.694 10 C 0.191 3.809 11 C 0.131 3.869 12 N -0.724 5.724 13 C -0.228 4.228 14 H 0.062 0.938 15 C -0.072 4.072 16 N -0.964 5.964 17 Si 0.961 3.039 18 H -0.295 1.295 19 H -0.294 1.294 20 H -0.274 1.274 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.103 4.103 25 C -0.087 4.087 26 H 0.076 0.924 27 C -0.136 4.136 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.221 0.779 32 H 0.402 0.598 33 H 0.005 0.995 34 H 0.053 0.947 35 H 0.375 0.625 36 H 0.247 0.753 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.041 0.959 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.788 2.301 18.233 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.022 4.022 3 N -0.327 5.327 4 S 0.476 5.524 5 C -0.308 4.308 6 C -0.249 4.249 7 C 0.367 3.633 8 O -0.406 6.406 9 N -0.346 5.346 10 C 0.105 3.895 11 C 0.004 3.996 12 N -0.367 5.367 13 C -0.360 4.360 14 H 0.080 0.920 15 C -0.265 4.265 16 N -0.616 5.616 17 Si 0.791 3.209 18 H -0.222 1.222 19 H -0.220 1.220 20 H -0.199 1.199 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.141 4.141 25 C -0.107 4.107 26 H 0.094 0.906 27 C -0.193 4.193 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.238 0.762 32 H 0.239 0.761 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.208 0.792 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.641 4.261 18.184 20.179 hybrid contribution -0.875 -1.467 -1.591 2.334 sum 6.766 2.794 16.593 18.136 Atomic orbital electron populations 1.20830 0.85696 1.04380 1.04252 1.21549 0.99908 0.87132 0.93637 1.76306 1.02107 1.26794 1.27500 1.83698 1.08777 0.95399 1.64510 1.27791 0.99036 1.05453 0.98476 1.20511 0.93216 0.95913 1.15233 1.17186 0.86531 0.83264 0.76366 1.90723 1.14500 1.86176 1.49226 1.45552 1.10146 1.04799 1.74086 1.20456 0.92723 0.82025 0.94313 1.21437 0.96760 0.96995 0.84427 1.42230 1.07734 1.84746 1.01986 1.19496 0.91419 1.37524 0.87594 0.92038 1.25312 0.97399 1.04118 0.99621 1.69766 1.13082 1.57209 1.21535 0.85315 0.78389 0.77330 0.79839 1.22247 1.22012 1.19909 1.21730 0.96304 0.97778 0.99597 1.21537 0.96703 1.02540 0.94255 1.21522 0.98410 0.98842 0.96273 1.21504 0.95277 0.99432 0.97890 1.21449 0.96530 0.99690 0.93053 0.90600 1.22255 0.98863 0.98199 0.99940 0.88947 0.90813 0.88956 0.76237 0.76145 0.97675 0.92941 0.79229 0.94375 0.90755 0.92974 0.90627 0.91393 0.91770 0.90304 0.91264 0.92157 0.92668 0.94043 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.72 9.51 71.24 0.68 -2.04 16 2 C 0.15 4.78 6.75 43.14 0.29 5.07 16 3 N -0.51 -14.98 11.97 -51.10 -0.61 -15.59 16 4 S 0.32 7.03 23.69 -56.49 -1.34 5.69 16 5 C -0.16 -3.45 10.79 67.74 0.73 -2.72 16 6 C -0.23 -6.67 5.86 -20.72 -0.12 -6.79 16 7 C 0.58 18.98 5.83 86.64 0.50 19.48 16 8 O -0.53 -19.91 7.20 -4.06 -0.03 -19.94 16 9 N -0.69 -19.67 3.54 -426.22 -1.51 -21.18 16 10 C 0.19 5.68 0.32 3.60 0.00 5.68 16 11 C 0.13 5.39 4.44 86.38 0.38 5.77 16 12 N -0.72 -36.41 5.17 -343.45 -1.77 -38.19 16 13 C -0.23 -13.08 9.99 84.03 0.84 -12.24 16 14 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 15 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 16 N -0.96 -58.64 13.06 21.65 0.28 -58.36 16 17 Si 0.96 47.83 29.55 68.60 2.03 49.85 16 18 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 19 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 20 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 21 C -0.12 -3.08 4.70 30.59 0.14 -2.94 16 22 C -0.11 -2.05 5.75 30.59 0.18 -1.87 16 23 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 24 C -0.10 -1.95 5.04 30.59 0.15 -1.79 16 25 C -0.09 -2.20 2.07 -10.80 -0.02 -2.22 16 26 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 27 C -0.14 -3.88 7.29 71.98 0.52 -3.35 16 28 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.09 3.28 5.63 -2.39 -0.01 3.27 16 31 H 0.22 3.06 7.22 -2.91 -0.02 3.03 16 32 H 0.40 9.40 5.68 -92.71 -0.53 8.87 16 33 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.05 2.38 4.24 -2.39 -0.01 2.37 16 35 H 0.37 19.45 6.50 -92.70 -0.60 18.85 16 36 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.05 1.69 7.17 -2.39 -0.02 1.67 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.09 6.70 -2.38 -0.02 1.08 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.16 7.60 -2.38 -0.02 1.14 16 45 H 0.05 1.92 5.04 -2.39 -0.01 1.90 16 46 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 47 H 0.05 1.58 5.32 -2.39 -0.01 1.56 16 Total: -1.00 -70.02 363.91 1.86 -68.16 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.12 Total: 34.89 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.93 Total: -5.33 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -3.61 Total: -133.32 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.03 Total: -19.94 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.85 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -1.34 Total: 5.69 kcal Total: -70.02 1.86 -68.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753532607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.352 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds