Wall clock time and date at job start Tue Mar 31 2020 20:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30937 * 122.90332 * 2 1 4 4 C 1.29431 * 117.36682 * 180.35035 * 3 2 1 5 5 C 1.50693 * 124.81131 * 179.73076 * 4 3 2 6 6 C 1.53003 * 109.47100 * 299.97482 * 5 4 3 7 7 C 1.53000 * 109.47050 * 59.97392 * 5 4 3 8 8 S 1.70956 * 110.38580 * 359.70867 * 4 3 2 9 9 C 1.35661 * 122.90328 * 179.81313 * 2 1 3 10 10 C 1.46684 * 126.13254 * 359.95968 * 9 2 1 11 11 O 1.21679 * 119.99733 * 7.33999 * 10 9 2 12 12 N 1.34771 * 119.99889 * 187.34383 * 10 9 2 13 13 C 1.46499 * 120.00254 * 6.39454 * 12 10 9 14 14 C 1.46506 * 119.99810 * 186.39977 * 12 10 9 15 15 H 1.08998 * 110.91468 * 11.25062 * 14 12 10 16 16 C 1.55156 * 111.00005 * 247.35038 * 14 12 10 17 17 C 1.54319 * 102.94471 * 277.42477 * 16 14 12 18 18 N 1.47017 * 107.27151 * 337.81297 * 17 16 14 19 19 C 1.36939 * 125.64694 * 178.90777 * 18 17 16 20 20 H 1.08004 * 120.00025 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00391 * 0.02562 * 19 18 17 22 22 N 1.31623 * 119.99952 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00344 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47316 * 89.99820 * 23 21 19 25 25 H 1.48498 * 109.47308 * 209.99935 * 23 21 19 26 26 H 1.48502 * 109.46735 * 329.99850 * 23 21 19 27 27 C 1.47423 * 108.70635 * 358.93409 * 18 17 16 28 28 H 1.08998 * 109.46846 * 270.18695 * 1 2 3 29 29 H 1.08994 * 109.46968 * 30.18944 * 1 2 3 30 30 H 1.08996 * 109.47252 * 150.18938 * 1 2 3 31 31 H 1.09004 * 109.47804 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.46755 * 59.99977 * 6 5 4 33 33 H 1.08997 * 109.47150 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.46865 * 299.99881 * 6 5 4 35 35 H 1.08999 * 109.46956 * 60.00177 * 7 5 4 36 36 H 1.08997 * 109.47333 * 180.02562 * 7 5 4 37 37 H 1.08994 * 109.47264 * 300.00204 * 7 5 4 38 38 H 1.08996 * 109.47096 * 276.01904 * 13 12 10 39 39 H 1.08998 * 109.46915 * 36.02317 * 13 12 10 40 40 H 1.09006 * 109.47116 * 156.02208 * 13 12 10 41 41 H 1.09004 * 110.72181 * 159.06092 * 16 14 12 42 42 H 1.09005 * 110.72192 * 35.79462 * 16 14 12 43 43 H 1.09005 * 109.88040 * 97.22617 * 17 16 14 44 44 H 1.09004 * 109.88272 * 218.23493 * 17 16 14 45 45 H 0.96992 * 120.00141 * 180.02562 * 22 21 19 46 46 H 1.08990 * 110.36870 * 142.96593 * 27 18 17 47 47 H 1.09002 * 110.36801 * 265.29871 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0993 0.0000 4 6 3.5066 0.9745 -0.0070 5 6 4.4821 2.1230 -0.0140 6 6 4.2561 2.9766 -1.2635 7 6 4.2692 2.9806 1.2349 8 16 3.9447 -0.6780 -0.0066 9 6 2.2440 -1.1390 0.0037 10 6 1.7191 -2.5087 0.0090 11 8 0.5254 -2.7033 -0.1242 12 7 2.5591 -3.5516 0.1615 13 6 3.9734 -3.3152 0.4616 14 6 2.0578 -4.9216 0.0270 15 1 1.0494 -4.9281 -0.3865 16 6 2.1062 -5.6674 1.3867 17 6 3.5702 -6.1491 1.4649 18 7 4.0905 -6.1890 0.0904 19 6 5.3624 -6.5449 -0.2714 20 1 5.6484 -6.5417 -1.3129 21 6 6.2841 -6.9098 0.7003 22 7 5.9354 -6.9142 1.9695 23 14 8.0193 -7.3945 0.2067 24 1 8.8851 -6.1881 0.1921 25 1 8.5554 -8.3768 1.1829 26 1 7.9966 -8.0041 -1.1472 27 6 3.0166 -5.7817 -0.8337 28 1 -0.3633 0.0034 1.0277 29 1 -0.3633 0.8882 -0.5167 30 1 -0.3633 -0.8916 -0.5109 31 1 5.5007 1.7346 -0.0187 32 1 3.2376 3.3649 -1.2588 33 1 4.9614 3.8075 -1.2684 34 1 4.4078 2.3655 -2.1533 35 1 4.4303 2.3725 2.1251 36 1 4.9745 3.8116 1.2297 37 1 3.2508 3.3690 1.2397 38 1 4.5153 -3.1285 -0.4655 39 1 4.0659 -2.4494 1.1173 40 1 4.3913 -4.1920 0.9564 41 1 1.4208 -6.5150 1.3864 42 1 1.8796 -4.9873 2.2079 43 1 4.1580 -5.4533 2.0637 44 1 3.6098 -7.1443 1.9078 45 1 6.5795 -7.1688 2.6485 46 1 3.4250 -5.1899 -1.6527 47 1 2.4962 -6.6580 -1.2203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033658613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:25 Heat of formation + Delta-G solvation = 40.581817 kcal Electronic energy + Delta-G solvation = -27896.941751 eV Core-core repulsion = 24207.689170 eV Total energy + Delta-G solvation = -3689.252582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.39303 -39.50669 -37.47880 -35.68640 -34.39634 -32.32238 -31.10930 -29.50589 -28.42194 -27.72403 -27.41541 -26.17885 -25.26250 -24.34027 -22.27803 -21.04005 -20.15253 -19.57844 -18.32746 -17.84042 -17.04854 -16.52780 -15.94543 -15.59209 -15.39527 -14.71015 -14.57851 -14.44449 -13.96671 -13.84900 -13.70008 -13.45085 -12.96683 -12.84647 -12.53401 -12.50193 -12.31478 -12.09791 -12.07896 -11.92275 -11.77504 -11.74365 -11.41450 -11.33292 -11.20989 -11.00568 -10.93980 -10.84787 -10.31919 -10.20340 -10.02215 -9.73421 -9.57126 -9.44857 -9.25040 -8.81012 -8.69048 -8.19838 -6.94535 -5.81948 -3.16558 0.30998 1.26332 1.68383 2.49871 3.22200 3.31421 3.33132 3.39761 3.41047 3.89096 4.41018 4.56977 4.71663 4.76699 4.81630 5.13604 5.20431 5.30049 5.38278 5.39430 5.40458 5.49961 5.51836 5.58599 5.61608 5.65939 5.71146 5.81991 5.84175 5.89114 5.90288 5.96974 6.04378 6.12266 6.27963 6.35885 6.43297 6.48328 6.55192 6.61574 6.97200 7.44892 7.48400 7.61629 7.71284 7.75091 8.12626 8.31415 9.10776 9.70158 10.35520 11.29162 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.003666 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.341397 B = 7636.162144 C = 9171.039630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.144 3.856 3 N -0.479 5.479 4 C 0.030 3.970 5 C -0.019 4.019 6 C -0.139 4.139 7 C -0.139 4.139 8 S 0.203 5.797 9 C -0.300 4.300 10 C 0.591 3.409 11 O -0.538 6.538 12 N -0.582 5.582 13 C 0.052 3.948 14 C 0.126 3.874 15 H 0.101 0.899 16 C -0.156 4.156 17 C 0.173 3.827 18 N -0.604 5.604 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.126 3.874 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.139 0.861 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.253 0.747 46 H 0.045 0.955 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 16.670 -2.586 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.006 3.994 3 N -0.194 5.194 4 C -0.244 4.244 5 C -0.041 4.041 6 C -0.198 4.198 7 C -0.198 4.198 8 S 0.464 5.536 9 C -0.424 4.424 10 C 0.379 3.621 11 O -0.418 6.418 12 N -0.313 5.313 13 C -0.093 4.093 14 C 0.022 3.978 15 H 0.119 0.881 16 C -0.195 4.195 17 C 0.048 3.952 18 N -0.331 5.331 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.001 4.001 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.157 0.843 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.875 16.447 -2.554 17.090 hybrid contribution 0.268 -0.298 -0.120 0.418 sum -3.607 16.150 -2.674 16.762 Atomic orbital electron populations 1.20645 0.86349 1.04404 1.03373 1.20573 0.98390 0.85124 0.95363 1.66026 1.04612 1.31483 1.17260 1.27834 0.94794 1.01110 1.00660 1.19862 0.95146 0.91293 0.97755 1.21793 1.02939 0.99194 0.95850 1.21795 1.02946 0.99182 0.95895 1.84738 1.05279 0.98412 1.65128 1.25483 0.96191 0.99190 1.21557 1.16787 0.85824 0.82487 0.77006 1.90713 1.14515 1.84700 1.51876 1.47557 1.09644 1.05685 1.68370 1.22440 0.80873 1.04465 1.01474 1.22312 0.98262 0.79484 0.97700 0.88128 1.23285 1.00824 0.99262 0.96171 1.21237 0.87215 0.99973 0.86733 1.44591 1.08015 1.79315 1.01208 1.19033 0.85275 1.38721 0.92811 0.90400 1.24779 0.98379 1.01591 0.95376 1.69955 1.33909 1.53965 0.98990 0.86145 0.84346 0.78005 0.77415 1.21548 1.21684 1.20720 1.21876 0.90038 0.95075 0.93089 0.90565 0.91120 0.87979 0.89236 0.91476 0.91669 0.92515 0.92469 0.91686 0.91477 0.92219 0.92487 0.84286 0.91154 0.91804 0.93211 0.93641 0.93627 0.93719 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.79 36.01 0.35 -0.82 16 2 C 0.14 2.15 6.79 -83.89 -0.57 1.58 16 3 N -0.48 -6.71 10.48 -7.71 -0.08 -6.79 16 4 C 0.03 0.37 5.90 -13.29 -0.08 0.29 16 5 C -0.02 -0.17 3.35 -91.77 -0.31 -0.48 16 6 C -0.14 -1.15 9.17 37.16 0.34 -0.81 16 7 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 8 S 0.20 2.67 18.12 -107.50 -1.95 0.72 16 9 C -0.30 -4.71 6.19 -37.10 -0.23 -4.94 16 10 C 0.59 10.39 7.61 -12.85 -0.10 10.29 16 11 O -0.54 -10.21 13.71 5.21 0.07 -10.14 16 12 N -0.58 -10.27 2.91 -173.02 -0.50 -10.77 16 13 C 0.05 0.89 7.86 59.85 0.47 1.37 16 14 C 0.13 2.28 3.60 -65.78 -0.24 2.04 16 15 H 0.10 1.77 7.15 -51.93 -0.37 1.40 16 16 C -0.16 -2.88 6.57 -24.90 -0.16 -3.04 16 17 C 0.17 3.88 4.31 -3.07 -0.01 3.87 16 18 N -0.60 -14.04 2.14 -170.08 -0.36 -14.40 16 19 C -0.23 -5.90 10.27 -15.06 -0.15 -6.06 16 20 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 21 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 22 N -0.92 -25.17 10.31 55.49 0.57 -24.60 16 23 Si 0.91 20.90 29.55 -169.99 -5.02 15.88 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.13 2.48 6.38 -2.53 -0.02 2.47 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.48 5.87 -51.93 -0.30 1.18 16 31 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.01 7.49 -51.93 -0.39 0.62 16 39 H 0.06 0.90 5.25 -29.65 -0.16 0.74 16 40 H 0.14 2.88 3.72 -51.93 -0.19 2.69 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 1.21 5.89 -51.93 -0.31 0.91 16 44 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 45 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -28.85 375.82 -9.22 -38.07 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.15 Total: 1.65 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.46 Total: 4.72 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.38 Total: -56.57 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.95 Total: 0.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.85 -9.22 -38.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033658613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.657 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds