Wall clock time and date at job start Tue Mar 31 2020 20:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33636 * 122.74932 * 2 1 4 4 S 1.76202 * 107.92069 * 179.75473 * 3 2 1 5 5 C 1.70977 * 90.28412 * 0.28313 * 4 3 2 6 6 C 1.50693 * 124.91505 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47421 * 269.69660 * 6 5 4 8 8 C 1.50703 * 109.47308 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00112 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00041 * 179.97438 * 8 7 6 11 11 C 1.46919 * 120.63157 * 5.69297 * 10 8 7 12 12 C 1.53187 * 108.77732 * 233.62740 * 11 10 8 13 13 C 1.53040 * 109.31432 * 305.36398 * 12 11 10 14 14 H 1.08996 * 109.45216 * 301.35412 * 13 12 11 15 15 N 1.46495 * 109.46377 * 181.38208 * 13 12 11 16 16 C 1.36943 * 119.99498 * 84.93240 * 15 13 12 17 17 H 1.07997 * 120.00282 * 0.02562 * 16 15 13 18 18 C 1.38818 * 119.99708 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00102 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 120.00020 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47181 * 89.99820 * 20 18 16 22 22 H 1.48500 * 109.47113 * 210.00167 * 20 18 16 23 23 H 1.48503 * 109.46824 * 330.00026 * 20 18 16 24 24 C 1.53039 * 109.53465 * 61.36314 * 13 12 11 25 25 C 1.46923 * 120.62921 * 185.71213 * 10 8 7 26 26 H 1.08998 * 109.58790 * 246.16137 * 25 10 8 27 27 C 1.53000 * 109.58900 * 6.58698 * 25 10 8 28 28 N 1.29023 * 110.16428 * 359.71090 * 5 4 3 29 29 H 1.08995 * 109.47698 * 270.02728 * 1 2 3 30 30 H 1.09005 * 109.46879 * 30.02875 * 1 2 3 31 31 H 1.09003 * 109.47338 * 150.02236 * 1 2 3 32 32 H 1.08000 * 126.03870 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47012 * 149.69818 * 6 5 4 34 34 H 1.09004 * 109.47160 * 29.69814 * 6 5 4 35 35 H 1.09001 * 109.46899 * 60.00088 * 7 6 5 36 36 H 1.09004 * 109.47079 * 300.00203 * 7 6 5 37 37 H 1.09008 * 109.58799 * 113.83664 * 11 10 8 38 38 H 1.09001 * 109.70559 * 353.49023 * 11 10 8 39 39 H 1.09003 * 109.49850 * 185.41261 * 12 11 10 40 40 H 1.08995 * 109.52496 * 65.33257 * 12 11 10 41 41 H 0.97000 * 120.00329 * 264.93575 * 15 13 12 42 42 H 0.97001 * 120.00315 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.49985 * 178.68473 * 24 13 12 44 44 H 1.09008 * 109.49726 * 58.58963 * 24 13 12 45 45 H 1.08998 * 109.47636 * 173.76081 * 27 25 10 46 46 H 1.09007 * 109.46846 * 293.76253 * 27 25 10 47 47 H 1.09001 * 109.47335 * 53.76183 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6730 0.0072 5 6 3.5039 -0.9820 0.0010 6 6 4.4834 -2.1272 0.0024 7 6 4.8155 -2.5160 -1.4396 8 6 5.7956 -3.6609 -1.4381 9 8 6.1893 -4.1208 -0.3872 10 7 6.2338 -4.1743 -2.6047 11 6 5.8640 -3.5511 -3.8828 12 6 5.2451 -4.6183 -4.7909 13 6 6.2147 -5.7950 -4.9227 14 1 7.1604 -5.4418 -5.3336 15 7 5.6401 -6.8031 -5.8170 16 6 5.8005 -6.6873 -7.1721 17 1 6.3509 -5.8531 -7.5814 18 6 5.2557 -7.6422 -8.0196 19 7 5.4102 -7.5312 -9.3219 20 14 4.3031 -9.0848 -7.3117 21 1 2.8670 -8.7232 -7.2011 22 1 4.4499 -10.2614 -8.2056 23 1 4.8351 -9.4163 -5.9654 24 6 6.4574 -6.4149 -3.5447 25 6 7.0901 -5.3681 -2.6225 26 1 8.0793 -5.1027 -2.9954 27 6 7.2078 -5.9360 -1.2067 28 7 2.2199 -1.1083 0.0006 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 1.8392 2.1308 -0.0004 33 1 4.0430 -2.9813 0.5168 34 1 5.3957 -1.8243 0.5164 35 1 5.2560 -1.6619 -1.9539 36 1 3.9032 -2.8188 -1.9535 37 1 6.7533 -3.1375 -4.3585 38 1 5.1398 -2.7555 -3.7077 39 1 5.0544 -4.1919 -5.7757 40 1 4.3075 -4.9663 -4.3574 41 1 5.1461 -7.5525 -5.4494 42 1 5.0292 -8.1983 -9.9142 43 1 7.1296 -7.2673 -3.6426 44 1 5.5085 -6.7459 -3.1224 45 1 7.7501 -6.8810 -1.2381 46 1 7.7461 -5.2290 -0.5753 47 1 6.2112 -6.1025 -0.7979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044684113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:11 Heat of formation + Delta-G solvation = 24.910004 kcal Electronic energy + Delta-G solvation = -26812.449055 eV Core-core repulsion = 23122.516892 eV Total energy + Delta-G solvation = -3689.932163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.59810 -40.10325 -37.63120 -34.77329 -34.59806 -32.79039 -31.97820 -31.11059 -29.82250 -27.98995 -27.25424 -26.28370 -24.32549 -22.84311 -22.65907 -21.31041 -20.19365 -20.01894 -18.97637 -17.97323 -17.57435 -16.85967 -16.15388 -15.70760 -15.43422 -15.19009 -14.84201 -14.48976 -14.17217 -14.02031 -13.70926 -13.64246 -13.49541 -13.13287 -12.96997 -12.73378 -12.63194 -12.54232 -12.37240 -12.19133 -12.05669 -11.86408 -11.63095 -11.48167 -11.37138 -11.04300 -10.96564 -10.85206 -10.53726 -10.30922 -9.94573 -9.92815 -9.72400 -9.62985 -9.14135 -8.96357 -8.93344 -8.49363 -7.32018 -5.80967 -3.16877 0.37326 1.04765 1.43207 2.44447 2.60074 2.99030 3.35403 3.38902 3.43576 3.71953 4.36570 4.55989 4.66207 4.73956 4.78556 4.83594 4.92901 4.97298 5.01666 5.17056 5.22235 5.24439 5.28024 5.34003 5.40391 5.47724 5.50630 5.54631 5.65986 5.73115 5.74483 5.80121 5.90058 5.93970 6.01445 6.04783 6.24978 6.31793 6.36558 6.42410 6.65003 6.78936 6.92325 7.45547 7.47228 7.94495 8.19010 8.38126 9.16335 9.89235 10.08926 11.37200 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.002501 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.585697 B =11191.700744 C =12256.697919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 C -0.268 4.268 4 S 0.117 5.883 5 C 0.060 3.940 6 C -0.027 4.027 7 C -0.137 4.137 8 C 0.518 3.482 9 O -0.540 6.540 10 N -0.603 5.603 11 C 0.106 3.894 12 C -0.152 4.152 13 C 0.184 3.816 14 H 0.056 0.944 15 N -0.748 5.748 16 C -0.245 4.245 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.139 4.139 25 C 0.148 3.852 26 H 0.072 0.928 27 C -0.135 4.135 28 N -0.470 5.470 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.176 0.824 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 17.919 20.892 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.407 4.407 4 S 0.372 5.628 5 C -0.219 4.219 6 C -0.068 4.068 7 C -0.178 4.178 8 C 0.306 3.694 9 O -0.419 6.419 10 N -0.336 5.336 11 C -0.017 4.017 12 C -0.193 4.193 13 C 0.074 3.926 14 H 0.074 0.926 15 N -0.390 5.390 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.178 4.178 25 C 0.045 3.955 26 H 0.090 0.910 27 C -0.193 4.193 28 N -0.185 5.185 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.193 0.807 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.264 17.758 21.190 27.740 hybrid contribution -1.815 -0.933 0.054 2.041 sum -4.079 16.826 21.244 27.405 Atomic orbital electron populations 1.20376 0.87055 1.03526 1.02973 1.20357 0.98369 0.86488 1.01119 1.26809 0.95130 1.03970 1.14744 1.84043 1.07418 1.03196 1.68103 1.27079 0.94035 0.98254 1.02509 1.20002 0.95764 0.93997 0.97082 1.21717 1.00242 0.98213 0.97664 1.20367 0.81505 0.83955 0.83552 1.90738 1.58254 1.61254 1.31624 1.48232 1.50303 1.28971 1.06112 1.21878 1.00172 0.96099 0.83568 1.22642 1.00201 0.97143 0.99320 1.20130 0.95058 0.88868 0.88541 0.92578 1.42795 1.65693 1.26823 1.03679 1.19059 1.29384 1.08536 0.80447 0.89179 1.24674 1.00665 0.98609 0.95115 1.69697 1.50013 1.36898 1.01478 0.86562 0.80422 0.83403 0.78206 1.21122 1.21744 1.20303 1.22346 1.01368 0.98101 0.95984 1.21282 0.92903 0.84203 0.97152 0.90968 1.22183 1.02962 0.99694 0.94427 1.66148 1.04536 1.31606 1.16171 0.90630 0.90693 0.90391 0.80685 0.87865 0.88738 0.88803 0.88129 0.91128 0.90306 0.90124 0.92237 0.80635 0.93032 0.90556 0.91920 0.93834 0.90609 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.31 36.01 0.37 -0.18 16 2 C 0.07 0.66 6.74 -84.22 -0.57 0.09 16 3 C -0.27 -2.13 11.13 29.12 0.32 -1.81 16 4 S 0.12 0.94 23.18 -107.50 -2.49 -1.55 16 5 C 0.06 0.60 6.64 -13.46 -0.09 0.51 16 6 C -0.03 -0.26 5.08 -27.89 -0.14 -0.40 16 7 C -0.14 -1.32 4.04 -27.88 -0.11 -1.43 16 8 C 0.52 6.40 7.50 -10.98 -0.08 6.31 16 9 O -0.54 -7.80 11.55 5.56 0.06 -7.74 16 10 N -0.60 -7.60 2.97 -165.23 -0.49 -8.09 16 11 C 0.11 1.25 6.34 -3.72 -0.02 1.23 16 12 C -0.15 -2.36 5.66 -26.61 -0.15 -2.51 16 13 C 0.18 3.29 2.73 -67.89 -0.19 3.10 16 14 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 15 N -0.75 -17.03 4.93 -53.39 -0.26 -17.30 16 16 C -0.24 -6.66 10.41 -15.05 -0.16 -6.82 16 17 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -28.86 13.97 55.49 0.78 -28.08 16 20 Si 0.88 21.91 27.74 -169.99 -4.71 17.19 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 24 C -0.14 -2.13 4.84 -26.61 -0.13 -2.26 16 25 C 0.15 1.98 3.49 -67.60 -0.24 1.74 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 C -0.14 -1.80 7.61 37.16 0.28 -1.52 16 28 N -0.47 -5.39 10.53 -8.06 -0.08 -5.47 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.09 0.74 7.71 -51.93 -0.40 0.34 16 36 H 0.10 1.00 7.93 -51.93 -0.41 0.59 16 37 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.08 0.76 5.94 -51.93 -0.31 0.45 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.36 8.24 5.66 -40.82 -0.23 8.00 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.05 6.58 -51.92 -0.34 0.71 16 47 H 0.06 0.93 6.92 -51.93 -0.36 0.57 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -32.53 384.46 -9.96 -42.49 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.55 Total: 6.65 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.99 Total: -3.89 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.06 Total: -58.94 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.06 Total: -7.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.53 -9.96 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044684113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.395 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds