Wall clock time and date at job start Tue Mar 31 2020 20:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31785 * 122.75024 * 2 1 4 4 C 1.29018 * 117.12411 * 180.02562 * 3 2 1 5 5 S 1.70975 * 110.16866 * 359.72564 * 4 3 2 6 6 C 1.33634 * 122.74789 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03939 * 0.02562 * 6 2 1 8 8 C 1.53006 * 109.46866 * 89.99880 * 7 6 2 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.62856 * 359.71632 * 11 9 8 13 13 C 1.53620 * 108.53888 * 126.37107 * 12 11 9 14 14 C 1.53039 * 109.24437 * 54.85908 * 13 12 11 15 15 C 1.53002 * 109.46292 * 178.48632 * 14 13 12 16 16 N 1.46498 * 109.47257 * 295.06610 * 15 14 13 17 17 C 1.36930 * 120.00386 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00410 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99991 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99911 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.46991 * 89.99558 * 21 19 17 23 23 H 1.48496 * 109.47081 * 209.99897 * 21 19 17 24 24 H 1.48497 * 109.46928 * 329.99714 * 21 19 17 25 25 C 1.53041 * 109.53623 * 298.50850 * 14 13 12 26 26 C 1.46924 * 120.63200 * 179.97438 * 11 9 8 27 27 H 1.09002 * 109.46570 * 269.99913 * 1 2 3 28 28 H 1.09000 * 109.46762 * 29.99698 * 1 2 3 29 29 H 1.08993 * 109.46848 * 149.99975 * 1 2 3 30 30 H 1.08001 * 124.91467 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47512 * 330.00002 * 7 6 2 32 32 H 1.09000 * 109.47247 * 209.99711 * 7 6 2 33 33 H 1.09000 * 109.47050 * 299.99952 * 8 7 6 34 34 H 1.09001 * 109.46801 * 60.00064 * 8 7 6 35 35 H 1.09001 * 109.58220 * 246.20541 * 12 11 9 36 36 H 1.08996 * 109.58731 * 6.62764 * 12 11 9 37 37 H 1.08997 * 109.63627 * 294.86360 * 13 12 11 38 38 H 1.09009 * 109.42697 * 174.72285 * 13 12 11 39 39 H 1.09001 * 109.44845 * 58.51832 * 14 13 12 40 40 H 1.09006 * 109.46785 * 55.07046 * 15 14 13 41 41 H 1.08995 * 109.46893 * 175.06435 * 15 14 13 42 42 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 43 43 H 0.97000 * 119.99538 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.49530 * 301.41126 * 25 14 13 45 45 H 1.09003 * 109.52453 * 181.33172 * 25 14 13 46 46 H 1.09002 * 109.58588 * 353.37383 * 26 11 9 47 47 H 1.08999 * 109.58905 * 113.64840 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2200 1.1084 0.0000 4 6 3.5040 0.9819 -0.0005 5 16 3.9333 -0.6731 0.0066 6 6 2.2300 -1.1239 0.0005 7 6 1.6847 -2.5288 0.0006 8 6 1.5007 -3.0045 -1.4420 9 6 0.9560 -4.4096 -1.4419 10 8 0.7370 -4.9751 -0.3915 11 7 0.7132 -5.0383 -2.6091 12 6 0.9686 -4.3645 -3.8895 13 6 1.8790 -5.2625 -4.7408 14 6 1.2393 -6.6462 -4.8758 15 6 2.1237 -7.5332 -5.7543 16 7 2.1640 -6.9890 -7.1139 17 6 2.8987 -7.6193 -8.0823 18 1 3.4483 -8.5180 -7.8439 19 6 2.9373 -7.1034 -9.3703 20 7 3.6432 -7.7096 -10.3012 21 14 1.9874 -5.5486 -9.7825 22 1 2.8516 -4.3639 -9.5486 23 1 1.5726 -5.5852 -11.2079 24 1 0.7828 -5.4609 -8.9186 25 6 1.0962 -7.2811 -3.4907 26 6 0.1827 -6.4084 -2.6252 27 1 -0.3632 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 4.2060 1.8026 -0.0002 31 1 0.7234 -2.5455 0.5140 32 1 2.3827 -3.1895 0.5148 33 1 0.8026 -2.3438 -1.9561 34 1 2.4621 -2.9879 -1.9554 35 1 0.0251 -4.1983 -4.4094 36 1 1.4614 -3.4095 -3.7079 37 1 2.8528 -5.3572 -4.2605 38 1 2.0020 -4.8205 -5.7297 39 1 0.2550 -6.5478 -5.3336 40 1 3.1331 -7.5602 -5.3436 41 1 1.7145 -8.5432 -5.7792 42 1 1.6701 -6.1821 -7.3281 43 1 3.6698 -7.3492 -11.2014 44 1 2.0774 -7.3569 -3.0221 45 1 0.6623 -8.2762 -3.5892 46 1 0.1568 -6.8021 -1.6091 47 1 -0.8246 -6.4053 -3.0415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206747708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:57 Heat of formation + Delta-G solvation = 6.452271 kcal Electronic energy + Delta-G solvation = -26525.512677 eV Core-core repulsion = 22834.780127 eV Total energy + Delta-G solvation = -3690.732550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.56385 -40.11751 -37.97002 -35.16672 -34.77578 -32.96809 -31.70879 -30.96123 -30.71650 -28.29848 -26.92283 -25.38294 -24.17060 -23.46576 -23.04235 -21.45987 -20.39055 -19.22837 -19.03981 -18.52386 -17.72709 -17.17731 -16.23886 -16.09323 -15.54940 -15.17680 -14.73925 -14.48171 -14.44600 -14.15479 -13.96785 -13.89067 -13.50994 -13.20175 -13.08946 -12.99133 -12.92585 -12.65825 -12.52172 -12.45011 -12.30562 -11.95582 -11.90594 -11.43120 -11.28527 -11.21082 -10.95232 -10.61149 -10.50145 -10.29112 -10.15159 -10.03103 -9.93361 -9.61309 -9.58799 -9.07109 -8.92994 -8.76909 -7.25941 -5.79656 -3.15152 0.32201 0.99666 1.38711 2.39441 2.42846 2.82226 3.32666 3.34195 3.41470 3.85510 4.14107 4.53202 4.55312 4.57566 4.63756 4.73721 4.78955 4.85095 4.87314 4.93467 5.05126 5.11520 5.20829 5.23992 5.31266 5.36082 5.42809 5.47059 5.52864 5.59728 5.63211 5.66615 5.68232 5.79024 5.85723 5.93010 6.01912 6.07776 6.23633 6.29799 6.43557 6.65516 6.76089 7.22193 7.34700 7.96763 7.97007 8.39458 9.18487 9.90644 10.10564 11.38942 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.002418 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.691508 B =11577.981981 C =12719.302130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.060 3.940 3 N -0.468 5.468 4 C 0.017 3.983 5 S 0.122 5.878 6 C -0.218 4.218 7 C -0.025 4.025 8 C -0.137 4.137 9 C 0.517 3.483 10 O -0.547 6.547 11 N -0.608 5.608 12 C 0.103 3.897 13 C -0.127 4.127 14 C -0.098 4.098 15 C 0.162 3.838 16 N -0.755 5.755 17 C -0.244 4.244 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.125 4.125 26 C 0.112 3.888 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.199 0.801 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 15.352 23.344 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 N -0.182 5.182 4 C -0.281 4.281 5 S 0.376 5.624 6 C -0.339 4.339 7 C -0.065 4.065 8 C -0.177 4.177 9 C 0.305 3.695 10 O -0.425 6.425 11 N -0.341 5.341 12 C -0.019 4.019 13 C -0.166 4.166 14 C -0.117 4.117 15 C 0.035 3.965 16 N -0.401 5.401 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.164 4.164 26 C -0.010 4.010 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.216 0.784 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.340 14.925 23.790 28.417 hybrid contribution -1.256 1.263 -0.730 1.925 sum -5.596 16.188 23.060 28.725 Atomic orbital electron populations 1.20388 0.87043 1.03429 1.03086 1.20269 0.98300 0.86153 1.02459 1.66189 1.05076 1.31606 1.15294 1.28293 0.95238 1.00121 1.04442 1.84175 1.07007 1.03568 1.67603 1.25742 0.95077 1.00635 1.12401 1.19757 1.02531 0.88184 0.96006 1.21724 1.03410 0.94015 0.98583 1.20528 0.77602 0.88078 0.83302 1.90689 1.53118 1.67788 1.30904 1.48168 1.64318 1.15645 1.05974 1.21986 1.00174 0.95997 0.83792 1.22025 0.98674 0.95553 1.00308 1.21362 1.00109 0.95065 0.95161 1.20647 0.96352 0.94792 0.84680 1.42723 1.59658 1.31137 1.06606 1.19067 1.21658 1.07767 0.88858 0.89280 1.24684 0.99945 0.98729 0.95900 1.69703 1.44764 1.41177 1.02613 0.86553 0.80031 0.84458 0.77526 1.21052 1.21712 1.20366 1.21888 1.00396 0.98867 0.95229 1.21625 0.96671 0.80953 1.01773 0.90554 0.90518 0.90608 0.78442 0.88789 0.89607 0.88539 0.88509 0.91041 0.89849 0.91241 0.90044 0.91022 0.95547 0.95506 0.80723 0.93053 0.91390 0.90417 0.89102 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.82 36.01 0.35 -0.21 16 2 C 0.06 0.55 6.74 -84.22 -0.57 -0.02 16 3 N -0.47 -4.66 10.53 -11.90 -0.13 -4.79 16 4 C 0.02 0.13 12.23 51.58 0.63 0.76 16 5 S 0.12 0.91 23.22 -107.50 -2.50 -1.59 16 6 C -0.22 -1.84 5.84 -35.92 -0.21 -2.05 16 7 C -0.02 -0.20 4.44 -27.88 -0.12 -0.33 16 8 C -0.14 -1.11 4.03 -27.88 -0.11 -1.22 16 9 C 0.52 5.72 7.70 -10.99 -0.08 5.64 16 10 O -0.55 -7.74 15.39 5.56 0.09 -7.65 16 11 N -0.61 -6.49 2.97 -172.53 -0.51 -7.01 16 12 C 0.10 1.00 6.37 -3.49 -0.02 0.98 16 13 C -0.13 -1.60 5.26 -26.39 -0.14 -1.73 16 14 C -0.10 -1.35 2.19 -90.58 -0.20 -1.54 16 15 C 0.16 2.98 5.65 -4.04 -0.02 2.95 16 16 N -0.76 -17.29 5.12 -59.91 -0.31 -17.60 16 17 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 18 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 21 Si 0.88 21.55 27.74 -169.99 -4.71 16.84 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 25 C -0.13 -1.45 5.36 -26.64 -0.14 -1.59 16 26 C 0.11 1.21 6.43 -3.74 -0.02 1.19 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.46 7.19 -51.93 -0.37 0.08 16 30 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.09 0.78 7.39 -51.93 -0.38 0.40 16 32 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.10 0.66 7.77 -51.93 -0.40 0.25 16 34 H 0.10 0.73 7.70 -51.93 -0.40 0.33 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.65 5.93 -51.93 -0.31 0.35 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.14 7.15 -51.92 -0.37 0.77 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.36 7.92 4.71 -40.82 -0.19 7.73 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 1.05 7.01 -51.93 -0.36 0.69 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -34.13 386.47 -9.84 -43.98 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.46 Total: 4.52 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.92 Total: -4.15 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.17 Total: -57.78 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.13 -9.84 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206747708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.430 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds