Wall clock time and date at job start Tue Mar 31 2020 20:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31785 * 122.75024 * 2 1 4 4 C 1.29018 * 117.12411 * 180.02562 * 3 2 1 5 5 S 1.70975 * 110.16866 * 359.72564 * 4 3 2 6 6 C 1.33634 * 122.74789 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03939 * 0.02562 * 6 2 1 8 8 C 1.53006 * 109.46866 * 89.99880 * 7 6 2 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.62856 * 359.71632 * 11 9 8 13 13 C 1.53620 * 108.53888 * 126.37107 * 12 11 9 14 14 C 1.53039 * 109.24437 * 54.85908 * 13 12 11 15 15 C 1.53002 * 109.46292 * 178.48632 * 14 13 12 16 16 N 1.46498 * 109.47257 * 295.06610 * 15 14 13 17 17 C 1.36930 * 120.00386 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00410 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99991 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99911 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.46991 * 89.99558 * 21 19 17 23 23 H 1.48496 * 109.47081 * 209.99897 * 21 19 17 24 24 H 1.48497 * 109.46928 * 329.99714 * 21 19 17 25 25 C 1.53041 * 109.53623 * 298.50850 * 14 13 12 26 26 C 1.46924 * 120.63200 * 179.97438 * 11 9 8 27 27 H 1.09002 * 109.46570 * 269.99913 * 1 2 3 28 28 H 1.09000 * 109.46762 * 29.99698 * 1 2 3 29 29 H 1.08993 * 109.46848 * 149.99975 * 1 2 3 30 30 H 1.08001 * 124.91467 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47512 * 330.00002 * 7 6 2 32 32 H 1.09000 * 109.47247 * 209.99711 * 7 6 2 33 33 H 1.09000 * 109.47050 * 299.99952 * 8 7 6 34 34 H 1.09001 * 109.46801 * 60.00064 * 8 7 6 35 35 H 1.09001 * 109.58220 * 246.20541 * 12 11 9 36 36 H 1.08996 * 109.58731 * 6.62764 * 12 11 9 37 37 H 1.08997 * 109.63627 * 294.86360 * 13 12 11 38 38 H 1.09009 * 109.42697 * 174.72285 * 13 12 11 39 39 H 1.09001 * 109.44845 * 58.51832 * 14 13 12 40 40 H 1.09006 * 109.46785 * 55.07046 * 15 14 13 41 41 H 1.08995 * 109.46893 * 175.06435 * 15 14 13 42 42 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 43 43 H 0.97000 * 119.99538 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.49530 * 301.41126 * 25 14 13 45 45 H 1.09003 * 109.52453 * 181.33172 * 25 14 13 46 46 H 1.09002 * 109.58588 * 353.37383 * 26 11 9 47 47 H 1.08999 * 109.58905 * 113.64840 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2200 1.1084 0.0000 4 6 3.5040 0.9819 -0.0005 5 16 3.9333 -0.6731 0.0066 6 6 2.2300 -1.1239 0.0005 7 6 1.6847 -2.5288 0.0006 8 6 1.5007 -3.0045 -1.4420 9 6 0.9560 -4.4096 -1.4419 10 8 0.7370 -4.9751 -0.3915 11 7 0.7132 -5.0383 -2.6091 12 6 0.9686 -4.3645 -3.8895 13 6 1.8790 -5.2625 -4.7408 14 6 1.2393 -6.6462 -4.8758 15 6 2.1237 -7.5332 -5.7543 16 7 2.1640 -6.9890 -7.1139 17 6 2.8987 -7.6193 -8.0823 18 1 3.4483 -8.5180 -7.8439 19 6 2.9373 -7.1034 -9.3703 20 7 3.6432 -7.7096 -10.3012 21 14 1.9874 -5.5486 -9.7825 22 1 2.8516 -4.3639 -9.5486 23 1 1.5726 -5.5852 -11.2079 24 1 0.7828 -5.4609 -8.9186 25 6 1.0962 -7.2811 -3.4907 26 6 0.1827 -6.4084 -2.6252 27 1 -0.3632 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 4.2060 1.8026 -0.0002 31 1 0.7234 -2.5455 0.5140 32 1 2.3827 -3.1895 0.5148 33 1 0.8026 -2.3438 -1.9561 34 1 2.4621 -2.9879 -1.9554 35 1 0.0251 -4.1983 -4.4094 36 1 1.4614 -3.4095 -3.7079 37 1 2.8528 -5.3572 -4.2605 38 1 2.0020 -4.8205 -5.7297 39 1 0.2550 -6.5478 -5.3336 40 1 3.1331 -7.5602 -5.3436 41 1 1.7145 -8.5432 -5.7792 42 1 1.6701 -6.1821 -7.3281 43 1 3.6698 -7.3492 -11.2014 44 1 2.0774 -7.3569 -3.0221 45 1 0.6623 -8.2762 -3.5892 46 1 0.1568 -6.8021 -1.6091 47 1 -0.8246 -6.4053 -3.0415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206747708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:56 Heat of formation + Delta-G solvation = -15.100700 kcal Electronic energy + Delta-G solvation = -26526.447284 eV Core-core repulsion = 22834.780127 eV Total energy + Delta-G solvation = -3691.667157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.36897 -40.79079 -39.02588 -36.68505 -35.45032 -34.48870 -32.91245 -32.18169 -31.65435 -29.10945 -28.12801 -26.07160 -25.29619 -24.45468 -24.13229 -22.86942 -21.49756 -20.01088 -19.82928 -19.56211 -19.10780 -18.08874 -16.97552 -16.91016 -16.59037 -16.23880 -15.97786 -15.78609 -15.51199 -15.23852 -14.92160 -14.79911 -14.51385 -14.40744 -14.11925 -13.93299 -13.71845 -13.60931 -13.46355 -13.34915 -13.18323 -13.02376 -12.96329 -12.77634 -12.50680 -12.18388 -12.17169 -11.87511 -11.81651 -11.68681 -11.51488 -11.38297 -10.96858 -10.83603 -10.60482 -10.20689 -9.65443 -9.65052 -9.28719 -8.02025 -5.35872 -0.26086 0.43316 0.80814 1.38159 1.43465 1.50954 1.59795 1.77957 2.03064 2.49849 3.29284 3.31439 3.44787 3.56987 3.77843 3.85576 3.91502 3.98670 4.02159 4.16947 4.17291 4.28947 4.32499 4.37467 4.43371 4.56091 4.57850 4.72147 4.74767 4.79396 4.81715 4.86189 4.92465 4.93238 5.00318 5.03227 5.04860 5.09049 5.14118 5.26652 5.37816 5.50281 5.57776 5.76152 6.21813 6.40202 6.76095 7.09153 7.13914 7.84658 8.05628 9.19791 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.002418 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.691508 B =11577.981981 C =12719.302130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.048 3.952 3 N -0.500 5.500 4 C 0.019 3.981 5 S 0.136 5.864 6 C -0.227 4.227 7 C -0.018 4.018 8 C -0.130 4.130 9 C 0.515 3.485 10 O -0.582 6.582 11 N -0.609 5.609 12 C 0.109 3.891 13 C -0.127 4.127 14 C -0.087 4.087 15 C 0.159 3.841 16 N -0.754 5.754 17 C -0.237 4.237 18 H 0.050 0.950 19 C -0.068 4.068 20 N -0.987 5.987 21 Si 0.958 3.042 22 H -0.274 1.274 23 H -0.298 1.298 24 H -0.245 1.245 25 C -0.117 4.117 26 C 0.115 3.885 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.225 0.775 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.368 0.632 43 H 0.258 0.742 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 17.765 24.200 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 N -0.214 5.214 4 C -0.279 4.279 5 S 0.390 5.610 6 C -0.348 4.348 7 C -0.058 4.058 8 C -0.170 4.170 9 C 0.305 3.695 10 O -0.463 6.463 11 N -0.341 5.341 12 C -0.013 4.013 13 C -0.165 4.165 14 C -0.106 4.106 15 C 0.033 3.967 16 N -0.401 5.401 17 C -0.368 4.368 18 H 0.069 0.931 19 C -0.259 4.259 20 N -0.637 5.637 21 Si 0.785 3.215 22 H -0.200 1.200 23 H -0.225 1.225 24 H -0.170 1.170 25 C -0.155 4.155 26 C -0.008 4.008 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.242 0.758 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.038 0.962 42 H 0.202 0.798 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.800 17.342 24.692 30.726 hybrid contribution -0.698 0.398 -0.935 1.233 sum -6.498 17.740 23.756 30.353 Atomic orbital electron populations 1.20445 0.86081 1.03892 1.03525 1.20573 0.99197 0.86192 1.02390 1.66244 1.06079 1.32277 1.16785 1.28809 0.95135 1.01062 1.02864 1.84128 1.06311 1.03367 1.67207 1.25748 0.95645 1.00441 1.12995 1.19647 1.02146 0.87930 0.96089 1.21721 1.04144 0.92340 0.98779 1.20993 0.76870 0.88911 0.82740 1.90679 1.54628 1.68820 1.32128 1.48250 1.63922 1.15572 1.06360 1.22036 1.00484 0.96024 0.82772 1.21987 0.99026 0.95162 1.00344 1.21253 0.99198 0.95041 0.95142 1.20805 0.96991 0.95530 0.83379 1.42674 1.58925 1.31171 1.07283 1.19029 1.21080 1.06535 0.90150 0.93146 1.25595 1.01637 1.02967 0.95687 1.69906 1.47159 1.43589 1.03078 0.85361 0.79555 0.79538 0.77082 1.19952 1.22526 1.16971 1.21800 1.00368 0.99424 0.93950 1.21574 0.97080 0.81013 1.01085 0.90141 0.90604 0.89535 0.75827 0.89016 0.90671 0.86534 0.87553 0.89484 0.87436 0.91962 0.91082 0.90355 0.96457 0.96179 0.79794 0.93349 0.92253 0.89683 0.89907 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.82 71.24 0.70 -0.30 16 2 C 0.05 0.80 6.74 41.52 0.28 1.08 16 3 N -0.50 -9.19 10.53 -191.55 -2.02 -11.21 16 4 C 0.02 0.25 12.23 130.66 1.60 1.85 16 5 S 0.14 1.78 23.22 -56.49 -1.31 0.47 16 6 C -0.23 -3.47 5.84 24.64 0.14 -3.32 16 7 C -0.02 -0.27 4.44 29.85 0.13 -0.14 16 8 C -0.13 -1.76 4.03 29.85 0.12 -1.64 16 9 C 0.52 10.28 7.70 87.66 0.67 10.96 16 10 O -0.58 -15.78 15.39 -3.04 -0.05 -15.83 16 11 N -0.61 -11.32 2.97 -818.17 -2.43 -13.74 16 12 C 0.11 1.71 6.37 86.51 0.55 2.26 16 13 C -0.13 -2.85 5.26 30.82 0.16 -2.68 16 14 C -0.09 -2.22 2.19 -10.77 -0.02 -2.24 16 15 C 0.16 5.74 5.65 86.38 0.49 6.22 16 16 N -0.75 -33.82 5.12 -343.45 -1.76 -35.58 16 17 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 18 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.99 -63.11 13.97 21.65 0.30 -62.81 16 21 Si 0.96 43.82 27.74 68.60 1.90 45.72 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 24 H -0.25 -9.82 6.52 99.48 0.65 -9.17 16 25 C -0.12 -2.50 5.36 30.66 0.16 -2.33 16 26 C 0.11 2.22 6.43 86.35 0.55 2.78 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.85 7.19 -2.39 -0.02 0.84 16 30 H 0.23 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.09 1.41 7.39 -2.39 -0.02 1.39 16 32 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.12 1.15 7.77 -2.39 -0.02 1.13 16 34 H 0.11 1.28 7.70 -2.39 -0.02 1.26 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 1.21 5.93 -2.39 -0.01 1.20 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.77 7.15 -2.38 -0.02 1.76 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.37 15.27 4.71 -92.71 -0.44 14.83 16 43 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.08 1.79 7.01 -2.39 -0.02 1.77 16 47 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.26 386.47 2.01 -73.25 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.47 Total: 23.27 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 6.89 Total: -3.54 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -5.90 Total: -123.34 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.05 Total: -15.83 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.72 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.31 Total: 0.47 kcal Total: -75.26 2.01 -73.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206747708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.145 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds