Wall clock time and date at job start Tue Mar 31 2020 21:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29435 * 124.80124 * 2 1 4 4 C 1.30944 * 117.36112 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.90196 * 179.97438 * 4 3 2 6 6 C 1.35656 * 114.19341 * 359.97438 * 4 3 2 7 7 C 1.46682 * 126.13207 * 179.97438 * 6 4 3 8 8 O 1.21684 * 119.99866 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00377 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00401 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47072 * 325.00367 * 10 9 7 12 12 C 1.53004 * 109.46686 * 85.00421 * 10 9 7 13 13 C 1.53007 * 109.46788 * 180.02562 * 12 10 9 14 14 C 1.52990 * 109.47204 * 300.00042 * 13 12 10 15 15 C 1.53004 * 109.47283 * 60.00261 * 14 13 12 16 16 C 1.52999 * 109.47311 * 205.00326 * 10 9 7 17 17 H 1.08998 * 109.47086 * 300.00033 * 16 10 9 18 18 C 1.52995 * 109.47138 * 60.00259 * 16 10 9 19 19 N 1.46502 * 109.47175 * 185.00101 * 18 16 10 20 20 C 1.36939 * 119.99765 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00129 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99593 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00236 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46522 * 90.00470 * 24 22 20 26 26 H 1.48494 * 109.47194 * 210.00343 * 24 22 20 27 27 H 1.48494 * 109.47061 * 330.00728 * 24 22 20 28 28 S 1.70952 * 124.80832 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47257 * 90.02520 * 1 2 3 30 30 H 1.09008 * 109.47087 * 210.02675 * 1 2 3 31 31 H 1.09002 * 109.47311 * 330.02363 * 1 2 3 32 32 H 1.08999 * 109.46928 * 90.02232 * 5 4 3 33 33 H 1.08997 * 109.47041 * 210.02539 * 5 4 3 34 34 H 1.09002 * 109.47117 * 330.02666 * 5 4 3 35 35 H 0.97008 * 119.99716 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47205 * 299.99583 * 12 10 9 37 37 H 1.08993 * 109.46985 * 60.00283 * 12 10 9 38 38 H 1.09005 * 109.46862 * 60.00177 * 13 12 10 39 39 H 1.08996 * 109.46841 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.47514 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47321 * 299.99854 * 14 13 12 42 42 H 1.08993 * 109.46985 * 59.99821 * 15 14 13 43 43 H 1.09005 * 109.47044 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.46986 * 305.00132 * 18 16 10 45 45 H 1.09002 * 109.47369 * 64.99782 * 18 16 10 46 46 H 0.97001 * 120.00047 * 359.97438 * 19 18 16 47 47 H 0.96993 * 119.99637 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 -0.0005 5 6 4.5197 2.0419 -0.0012 6 6 3.9352 -0.4057 -0.0004 7 6 5.3189 -0.8924 -0.0015 8 8 6.2425 -0.1002 -0.0020 9 7 5.5674 -2.2170 -0.0007 10 6 6.9494 -2.7031 -0.0012 11 1 7.5711 -2.0299 -0.5914 12 6 7.4729 -2.7529 1.4356 13 6 8.9165 -3.2600 1.4351 14 6 8.9641 -4.6626 0.8261 15 6 8.4406 -4.6129 -0.6107 16 6 6.9964 -4.1060 -0.6100 17 1 6.3746 -4.7792 -0.0198 18 6 6.4729 -4.0563 -2.0467 19 7 6.4055 -5.4155 -2.5893 20 6 5.9633 -5.6207 -3.8690 21 1 5.6640 -4.7806 -4.4781 22 6 5.9000 -6.9085 -4.3832 23 7 6.2644 -7.9323 -3.6406 24 14 5.2962 -7.1886 -6.1286 25 1 6.4479 -7.1383 -7.0647 26 1 4.6427 -8.5190 -6.2188 27 1 4.3182 -6.1312 -6.4898 28 16 2.4828 -1.4036 -0.0006 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 4.7556 2.3188 1.0264 33 1 5.4328 1.7428 -0.5157 34 1 4.0762 2.8951 -0.5145 35 1 4.8311 -2.8486 0.0001 36 1 7.4394 -1.7535 1.8693 37 1 6.8511 -3.4261 2.0257 38 1 9.5379 -2.5863 0.8451 39 1 9.2895 -3.2950 2.4586 40 1 9.9924 -5.0241 0.8262 41 1 8.3426 -5.3363 1.4162 42 1 9.0620 -3.9394 -1.2007 43 1 8.4741 -5.6124 -1.0444 44 1 5.4776 -3.6117 -2.0556 45 1 7.1452 -3.4540 -2.6578 46 1 6.6747 -6.1699 -2.0423 47 1 6.2197 -8.8322 -3.9999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754350970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:06 Heat of formation + Delta-G solvation = -6.951094 kcal Electronic energy + Delta-G solvation = -27200.867364 eV Core-core repulsion = 23509.553601 eV Total energy + Delta-G solvation = -3691.313764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59227 -39.71034 -38.07206 -34.64034 -34.21617 -33.19596 -31.91465 -30.02447 -29.57527 -29.44545 -27.88489 -25.23242 -23.29965 -23.09053 -22.72930 -21.09178 -20.66151 -20.20851 -19.18066 -18.12141 -17.34351 -16.71809 -16.01270 -15.73664 -15.00937 -14.91619 -14.57399 -14.36711 -14.23195 -13.94513 -13.77326 -13.62537 -13.46742 -13.24081 -13.04124 -12.81968 -12.71533 -12.46058 -12.43936 -12.23846 -11.85483 -11.55475 -11.49156 -11.12579 -10.90644 -10.88827 -10.73432 -10.42175 -10.25647 -10.16208 -10.09158 -9.98706 -9.74506 -9.70213 -9.63990 -9.04110 -8.89313 -8.80542 -6.93077 -5.78226 -3.06464 0.05973 0.97260 1.38154 2.26775 3.06323 3.11249 3.42365 3.47904 3.49101 3.75352 4.54890 4.61818 4.68340 4.81120 4.88281 4.95075 5.02214 5.06948 5.08862 5.23516 5.34223 5.44657 5.54468 5.55825 5.57626 5.61618 5.65037 5.67166 5.72805 5.73554 5.87568 6.07234 6.12286 6.16348 6.22634 6.23522 6.27420 6.37347 6.49976 6.54886 6.67249 6.76457 6.88374 7.35949 7.48849 7.69208 8.10876 8.40909 9.52350 10.09635 10.44839 11.44630 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.003686 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.457835 B = 7594.077062 C = 9966.377509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.060 3.940 3 N -0.481 5.481 4 C 0.149 3.851 5 C -0.089 4.089 6 C -0.301 4.301 7 C 0.599 3.401 8 O -0.526 6.526 9 N -0.713 5.713 10 C 0.155 3.845 11 H 0.091 0.909 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.122 4.122 15 C -0.106 4.106 16 C -0.101 4.101 17 H 0.075 0.925 18 C 0.158 3.842 19 N -0.730 5.730 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 S 0.169 5.831 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.017 0.983 45 H 0.019 0.981 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 14.516 13.451 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.215 4.215 3 N -0.197 5.197 4 C 0.011 3.989 5 C -0.148 4.148 6 C -0.424 4.424 7 C 0.385 3.615 8 O -0.405 6.405 9 N -0.363 5.363 10 C 0.051 3.949 11 H 0.109 0.891 12 C -0.165 4.165 13 C -0.152 4.152 14 C -0.159 4.159 15 C -0.144 4.144 16 C -0.120 4.120 17 H 0.093 0.907 18 C 0.031 3.969 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 S 0.426 5.574 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.798 14.475 13.275 20.479 hybrid contribution -0.196 -0.182 -0.872 0.912 sum -5.994 14.293 12.404 19.851 Atomic orbital electron populations 1.20540 0.84661 1.04557 1.04407 1.27393 1.02146 0.91310 1.00675 1.66102 1.04460 1.31323 1.17794 1.20655 0.89861 0.93685 0.94740 1.20659 0.97032 0.93477 1.03586 1.25502 0.98128 0.97242 1.21568 1.16623 0.85849 0.82673 0.76383 1.90765 1.44253 1.54870 1.50642 1.46012 1.09752 1.06013 1.74523 1.21076 0.81303 0.95983 0.96546 0.89082 1.21901 0.96774 1.01404 0.96412 1.21482 0.95969 0.97110 1.00661 1.21601 1.01030 0.96468 0.96824 1.21499 0.94319 1.02770 0.95831 1.21618 0.98145 0.94235 0.98003 0.90668 1.20663 0.96922 0.89022 0.90330 1.42354 1.79243 1.01815 1.14044 1.19219 1.35505 0.92293 0.89946 0.91340 1.24710 1.02337 0.95554 0.98243 1.69652 1.54281 0.98153 1.36139 0.86216 0.78347 0.77099 0.84704 1.21719 1.21763 1.20812 1.84077 0.96393 1.10963 1.65937 0.89003 0.89664 0.88951 0.90220 0.88037 0.90860 0.76617 0.91703 0.91882 0.91826 0.92112 0.92030 0.92017 0.91963 0.90157 0.96533 0.96321 0.78195 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.00 0.38 -0.14 16 2 C 0.06 0.62 7.39 -13.29 -0.10 0.52 16 3 N -0.48 -6.05 10.50 -7.70 -0.08 -6.13 16 4 C 0.15 1.96 6.79 -83.89 -0.57 1.39 16 5 C -0.09 -1.03 9.70 36.01 0.35 -0.68 16 6 C -0.30 -4.00 6.48 -37.10 -0.24 -4.24 16 7 C 0.60 8.74 7.74 -12.85 -0.10 8.64 16 8 O -0.53 -8.67 13.93 5.20 0.07 -8.60 16 9 N -0.71 -9.70 4.30 -55.12 -0.24 -9.94 16 10 C 0.16 2.15 1.90 -67.93 -0.13 2.02 16 11 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 12 C -0.13 -1.53 5.49 -26.73 -0.15 -1.67 16 13 C -0.11 -1.28 5.92 -26.73 -0.16 -1.44 16 14 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 15 C -0.11 -1.59 5.08 -26.70 -0.14 -1.73 16 16 C -0.10 -1.56 1.81 -90.59 -0.16 -1.73 16 17 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 18 C 0.16 3.14 5.56 -4.04 -0.02 3.11 16 19 N -0.73 -18.00 5.33 -59.91 -0.32 -18.32 16 20 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 S 0.17 1.81 22.31 -107.50 -2.40 -0.59 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.31 6.01 -51.93 -0.31 1.00 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 5.08 7.58 -40.82 -0.31 4.77 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.40 7.18 -51.93 -0.37 1.03 16 44 H 0.02 0.34 7.30 -51.93 -0.38 -0.04 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -32.13 388.66 -10.36 -42.49 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.51 Total: 9.80 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.44 Total: -4.79 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.09 Total: -61.44 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.40 Total: -0.59 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.13 -10.36 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.534 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds