Wall clock time and date at job start Tue Mar 31 2020 21:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29435 * 124.80124 * 2 1 4 4 C 1.30944 * 117.36112 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.90196 * 179.97438 * 4 3 2 6 6 C 1.35656 * 114.19341 * 359.97438 * 4 3 2 7 7 C 1.46682 * 126.13207 * 179.97438 * 6 4 3 8 8 O 1.21684 * 119.99866 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00377 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00401 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47072 * 325.00367 * 10 9 7 12 12 C 1.53004 * 109.46686 * 85.00421 * 10 9 7 13 13 C 1.53007 * 109.46788 * 180.02562 * 12 10 9 14 14 C 1.52990 * 109.47204 * 300.00042 * 13 12 10 15 15 C 1.53004 * 109.47283 * 60.00261 * 14 13 12 16 16 C 1.52999 * 109.47311 * 205.00326 * 10 9 7 17 17 H 1.08998 * 109.47086 * 300.00033 * 16 10 9 18 18 C 1.52995 * 109.47138 * 60.00259 * 16 10 9 19 19 N 1.46502 * 109.47175 * 185.00101 * 18 16 10 20 20 C 1.36939 * 119.99765 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00129 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99593 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00236 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46522 * 90.00470 * 24 22 20 26 26 H 1.48494 * 109.47194 * 210.00343 * 24 22 20 27 27 H 1.48494 * 109.47061 * 330.00728 * 24 22 20 28 28 S 1.70952 * 124.80832 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47257 * 90.02520 * 1 2 3 30 30 H 1.09008 * 109.47087 * 210.02675 * 1 2 3 31 31 H 1.09002 * 109.47311 * 330.02363 * 1 2 3 32 32 H 1.08999 * 109.46928 * 90.02232 * 5 4 3 33 33 H 1.08997 * 109.47041 * 210.02539 * 5 4 3 34 34 H 1.09002 * 109.47117 * 330.02666 * 5 4 3 35 35 H 0.97008 * 119.99716 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47205 * 299.99583 * 12 10 9 37 37 H 1.08993 * 109.46985 * 60.00283 * 12 10 9 38 38 H 1.09005 * 109.46862 * 60.00177 * 13 12 10 39 39 H 1.08996 * 109.46841 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.47514 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47321 * 299.99854 * 14 13 12 42 42 H 1.08993 * 109.46985 * 59.99821 * 15 14 13 43 43 H 1.09005 * 109.47044 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.46986 * 305.00132 * 18 16 10 45 45 H 1.09002 * 109.47369 * 64.99782 * 18 16 10 46 46 H 0.97001 * 120.00047 * 359.97438 * 19 18 16 47 47 H 0.96993 * 119.99637 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 -0.0005 5 6 4.5197 2.0419 -0.0012 6 6 3.9352 -0.4057 -0.0004 7 6 5.3189 -0.8924 -0.0015 8 8 6.2425 -0.1002 -0.0020 9 7 5.5674 -2.2170 -0.0007 10 6 6.9494 -2.7031 -0.0012 11 1 7.5711 -2.0299 -0.5914 12 6 7.4729 -2.7529 1.4356 13 6 8.9165 -3.2600 1.4351 14 6 8.9641 -4.6626 0.8261 15 6 8.4406 -4.6129 -0.6107 16 6 6.9964 -4.1060 -0.6100 17 1 6.3746 -4.7792 -0.0198 18 6 6.4729 -4.0563 -2.0467 19 7 6.4055 -5.4155 -2.5893 20 6 5.9633 -5.6207 -3.8690 21 1 5.6640 -4.7806 -4.4781 22 6 5.9000 -6.9085 -4.3832 23 7 6.2644 -7.9323 -3.6406 24 14 5.2962 -7.1886 -6.1286 25 1 6.4479 -7.1383 -7.0647 26 1 4.6427 -8.5190 -6.2188 27 1 4.3182 -6.1312 -6.4898 28 16 2.4828 -1.4036 -0.0006 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 4.7556 2.3188 1.0264 33 1 5.4328 1.7428 -0.5157 34 1 4.0762 2.8951 -0.5145 35 1 4.8311 -2.8486 0.0001 36 1 7.4394 -1.7535 1.8693 37 1 6.8511 -3.4261 2.0257 38 1 9.5379 -2.5863 0.8451 39 1 9.2895 -3.2950 2.4586 40 1 9.9924 -5.0241 0.8262 41 1 8.3426 -5.3363 1.4162 42 1 9.0620 -3.9394 -1.2007 43 1 8.4741 -5.6124 -1.0444 44 1 5.4776 -3.6117 -2.0556 45 1 7.1452 -3.4540 -2.6578 46 1 6.6747 -6.1699 -2.0423 47 1 6.2197 -8.8322 -3.9999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754350970.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:05 Heat of formation + Delta-G solvation = -26.990453 kcal Electronic energy + Delta-G solvation = -27201.736336 eV Core-core repulsion = 23509.553601 eV Total energy + Delta-G solvation = -3692.182735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62593 -40.75959 -39.24732 -36.44187 -35.33767 -34.01324 -33.70608 -31.23631 -31.06124 -30.19878 -28.92381 -26.93303 -24.74615 -24.19077 -23.82165 -22.20499 -22.03769 -21.27012 -20.29284 -19.23369 -19.02612 -17.89921 -17.13011 -16.78719 -16.63884 -16.08608 -15.78511 -15.47916 -15.44345 -15.22247 -15.06134 -14.83144 -14.59845 -14.45359 -14.21997 -14.03694 -13.73298 -13.42056 -13.31854 -13.26768 -12.99785 -12.95505 -12.75874 -12.68572 -12.40817 -12.23180 -12.11179 -11.94883 -11.86638 -11.53815 -11.38555 -11.19548 -11.10418 -10.93477 -10.74771 -10.62058 -10.12258 -9.75049 -8.99923 -7.95815 -5.24127 -0.85151 0.10690 0.48924 1.31104 1.46546 1.47745 1.56081 1.97235 2.04417 2.54773 2.97027 3.37504 3.49499 3.69256 3.77322 3.86785 3.90566 4.02341 4.08542 4.24155 4.36950 4.42135 4.47403 4.50546 4.51527 4.55368 4.62795 4.65682 4.69811 4.83058 4.85853 4.87316 5.02196 5.06655 5.09636 5.12114 5.22693 5.26527 5.29248 5.31151 5.42259 5.45607 5.48177 5.57937 6.26190 6.30729 6.54022 6.99985 7.33766 8.07844 8.33672 9.27299 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.003686 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.457835 B = 7594.077062 C = 9966.377509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.069 3.931 3 N -0.504 5.504 4 C 0.143 3.857 5 C -0.086 4.086 6 C -0.332 4.332 7 C 0.598 3.402 8 O -0.552 6.552 9 N -0.711 5.711 10 C 0.163 3.837 11 H 0.074 0.926 12 C -0.118 4.118 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.104 4.104 16 C -0.086 4.086 17 H 0.078 0.922 18 C 0.160 3.840 19 N -0.738 5.738 20 C -0.247 4.247 21 H 0.068 0.932 22 C -0.068 4.068 23 N -0.965 5.965 24 Si 0.969 3.031 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.272 1.272 28 S 0.192 5.808 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.403 0.597 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.018 0.982 45 H 0.006 0.994 46 H 0.377 0.623 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.155 14.968 14.259 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.205 4.205 3 N -0.220 5.220 4 C 0.005 3.995 5 C -0.144 4.144 6 C -0.456 4.456 7 C 0.385 3.615 8 O -0.433 6.433 9 N -0.361 5.361 10 C 0.058 3.942 11 H 0.092 0.908 12 C -0.157 4.157 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.106 4.106 17 H 0.097 0.903 18 C 0.033 3.967 19 N -0.381 5.381 20 C -0.379 4.379 21 H 0.086 0.914 22 C -0.260 4.260 23 N -0.615 5.615 24 Si 0.798 3.202 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.197 1.197 28 S 0.449 5.551 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.239 0.761 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.024 0.976 46 H 0.210 0.790 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.091 14.945 14.091 21.730 hybrid contribution 0.127 -0.268 -1.136 1.174 sum -6.964 14.677 12.955 20.779 Atomic orbital electron populations 1.20800 0.81695 1.06164 1.05734 1.28167 1.03753 0.90630 0.97974 1.66183 1.04221 1.32198 1.19398 1.20911 0.90529 0.93998 0.94101 1.20624 0.96239 0.93570 1.04002 1.25422 0.98394 0.98070 1.23725 1.16806 0.86323 0.82554 0.75816 1.90743 1.45246 1.55401 1.51891 1.45976 1.09736 1.05988 1.74356 1.20950 0.81454 0.94149 0.97635 0.90757 1.21841 0.97550 1.01601 0.94715 1.21467 0.95260 0.96108 1.01888 1.21545 1.01650 0.97426 0.94527 1.21439 0.93994 1.00810 0.97943 1.21460 0.98380 0.95531 0.95193 0.90323 1.20747 0.96778 0.86480 0.92651 1.42487 1.78943 1.03374 1.13304 1.19554 1.34799 0.92404 0.91157 0.91376 1.25468 1.03180 0.95391 1.02004 1.69793 1.55695 0.98283 1.37750 0.85218 0.77860 0.76949 0.80206 1.21588 1.21831 1.19694 1.83935 0.95000 1.10487 1.65645 0.87569 0.87400 0.87967 0.89408 0.89635 0.89724 0.76104 0.91977 0.90796 0.92020 0.89804 0.90825 0.91432 0.92506 0.92949 0.96419 0.97592 0.78999 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.46 71.24 0.75 -0.08 16 2 C 0.07 1.31 7.39 88.46 0.65 1.97 16 3 N -0.50 -12.10 10.50 -178.28 -1.87 -13.97 16 4 C 0.14 3.73 6.79 42.09 0.29 4.02 16 5 C -0.09 -1.99 9.70 71.24 0.69 -1.30 16 6 C -0.33 -8.77 6.48 23.88 0.15 -8.61 16 7 C 0.60 17.58 7.74 86.45 0.67 18.25 16 8 O -0.55 -18.56 13.93 -4.30 -0.06 -18.62 16 9 N -0.71 -19.23 4.30 -446.51 -1.92 -21.15 16 10 C 0.16 4.47 1.90 44.99 0.09 4.56 16 11 H 0.07 2.33 7.58 -2.39 -0.02 2.31 16 12 C -0.12 -2.69 5.49 30.60 0.17 -2.52 16 13 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 14 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16 15 C -0.10 -3.12 5.08 30.61 0.16 -2.96 16 16 C -0.09 -2.68 1.81 -10.78 -0.02 -2.70 16 17 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 18 C 0.16 6.45 5.56 86.38 0.48 6.93 16 19 N -0.74 -37.01 5.33 -343.44 -1.83 -38.84 16 20 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 21 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 22 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 23 N -0.96 -58.03 13.06 21.65 0.28 -57.74 16 24 Si 0.97 45.92 29.55 68.60 2.03 47.94 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 S 0.19 3.86 22.31 -56.49 -1.26 2.60 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.28 6.01 -2.39 -0.01 2.27 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.40 10.10 7.58 -92.70 -0.70 9.40 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.48 8.14 -2.38 -0.02 1.47 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.87 7.18 -2.38 -0.02 1.86 16 44 H 0.02 0.72 7.30 -2.38 -0.02 0.70 16 45 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.38 19.80 6.85 -92.71 -0.64 19.16 16 47 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -69.25 388.66 0.76 -68.49 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.35 Total: 34.60 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.74 Total: -3.31 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -5.34 Total: -131.70 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.06 Total: -18.62 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.26 Total: 2.60 kcal Total: -69.25 0.76 -68.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350970.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.503 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds