Wall clock time and date at job start Tue Mar 31 2020 21:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29427 * 124.80589 * 2 1 4 4 C 1.30944 * 117.36058 * 179.69369 * 3 2 1 5 5 C 1.50703 * 122.90400 * 180.31044 * 4 3 2 6 6 C 1.35666 * 114.19228 * 0.48253 * 4 3 2 7 7 C 1.46681 * 126.12680 * 179.82594 * 6 4 3 8 8 O 1.21688 * 120.00279 * 359.71419 * 7 6 4 9 9 N 1.34777 * 119.99780 * 179.71930 * 7 6 4 10 10 C 1.46494 * 120.00106 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47008 * 324.99143 * 10 9 7 12 12 C 1.53003 * 109.47672 * 84.99461 * 10 9 7 13 13 C 1.52994 * 109.46945 * 59.99777 * 12 10 9 14 14 C 1.53005 * 109.47099 * 60.00218 * 13 12 10 15 15 C 1.52996 * 109.47324 * 299.99749 * 14 13 12 16 16 C 1.53004 * 109.47171 * 204.99747 * 10 9 7 17 17 H 1.08999 * 109.47217 * 179.97438 * 16 10 9 18 18 C 1.52996 * 109.47336 * 59.99365 * 16 10 9 19 19 N 1.46498 * 109.47059 * 175.00083 * 18 16 10 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 S 1.70959 * 124.80058 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47321 * 270.04384 * 1 2 3 30 30 H 1.09010 * 109.46511 * 30.04176 * 1 2 3 31 31 H 1.08999 * 109.47283 * 150.03568 * 1 2 3 32 32 H 1.09005 * 109.46476 * 270.19060 * 5 4 3 33 33 H 1.08995 * 109.47401 * 30.18356 * 5 4 3 34 34 H 1.08997 * 109.47588 * 150.19511 * 5 4 3 35 35 H 0.97000 * 120.00211 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.46731 * 300.00266 * 12 10 9 37 37 H 1.08994 * 109.46929 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47864 * 300.00473 * 13 12 10 39 39 H 1.09001 * 109.47328 * 180.02562 * 13 12 10 40 40 H 1.09005 * 109.47165 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.46900 * 60.00147 * 14 13 12 42 42 H 1.09000 * 109.47017 * 300.00357 * 15 14 13 43 43 H 1.08995 * 109.47011 * 179.97438 * 15 14 13 44 44 H 1.09004 * 109.47066 * 55.00351 * 18 16 10 45 45 H 1.08994 * 109.46974 * 295.00498 * 18 16 10 46 46 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 47 47 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0627 0.0000 4 6 3.5441 0.8930 0.0062 5 6 4.5198 2.0416 0.0139 6 6 3.9351 -0.4061 0.0015 7 6 5.3188 -0.8928 0.0029 8 8 6.2425 -0.1005 0.0035 9 7 5.5672 -2.2174 0.0034 10 6 6.9491 -2.7036 0.0053 11 1 7.5720 -2.0302 -0.5834 12 6 7.4701 -2.7540 1.4431 13 6 6.5958 -3.6992 2.2694 14 6 6.6438 -5.1019 1.6601 15 6 6.1228 -5.0515 0.2225 16 6 6.9972 -4.1062 -0.6040 17 1 8.0255 -4.4678 -0.6030 18 6 6.4762 -4.0559 -2.0417 19 7 6.6331 -5.3727 -2.6643 20 6 6.2280 -5.5713 -3.9573 21 1 5.7970 -4.7560 -4.5194 22 6 6.3714 -6.8205 -4.5454 23 7 6.8962 -7.8141 -3.8601 24 14 5.8195 -7.0912 -6.3093 25 1 6.5741 -6.1824 -7.2091 26 1 6.0784 -8.5008 -6.6982 27 1 4.3665 -6.8060 -6.4226 28 16 2.4827 -1.4038 0.0006 29 1 -0.3634 0.0008 1.0276 30 1 -0.3633 0.8897 -0.5145 31 1 -0.3634 -0.8903 -0.5133 32 1 4.7576 2.3230 -1.0120 33 1 4.0755 2.8924 0.5302 34 1 5.4321 1.7400 0.5286 35 1 4.8309 -2.8490 0.0032 36 1 7.4358 -1.7548 1.8771 37 1 8.4984 -3.1153 1.4443 38 1 5.5675 -3.3376 2.2681 39 1 6.9666 -3.7348 3.2938 40 1 6.0212 -5.7754 2.2492 41 1 7.6720 -5.4636 1.6616 42 1 5.0946 -4.6898 0.2211 43 1 6.1575 -6.0507 -0.2117 44 1 7.0428 -3.3165 -2.6078 45 1 5.4219 -3.7797 -2.0365 46 1 7.0199 -6.1050 -2.1593 47 1 6.9967 -8.6869 -4.2712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754350972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:14 Heat of formation + Delta-G solvation = -3.924330 kcal Electronic energy + Delta-G solvation = -27487.565454 eV Core-core repulsion = 23796.382941 eV Total energy + Delta-G solvation = -3691.182513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66651 -39.85958 -38.03693 -34.67472 -33.72958 -33.20756 -31.94298 -30.23340 -29.59617 -29.46302 -28.01791 -25.23389 -23.26222 -23.05842 -22.67947 -21.85479 -20.66844 -19.69877 -19.09726 -17.99821 -17.37660 -16.81157 -15.84640 -15.67547 -15.21952 -14.83170 -14.71061 -14.57215 -14.20485 -13.97961 -13.72368 -13.57781 -13.41867 -13.26911 -13.07344 -12.83745 -12.72537 -12.51303 -12.25909 -12.12014 -11.98921 -11.68457 -11.50575 -11.43576 -10.90657 -10.89691 -10.73633 -10.38242 -10.24570 -10.17792 -10.00991 -9.89231 -9.80508 -9.71208 -9.63202 -9.04631 -8.88923 -8.81458 -6.92915 -5.77747 -3.06071 0.04897 0.95660 1.36537 2.26137 3.08685 3.12338 3.43278 3.47850 3.48734 3.74294 4.55554 4.60737 4.69157 4.82716 4.86915 4.89260 4.96067 5.02631 5.05724 5.22934 5.31038 5.43484 5.55335 5.56607 5.58103 5.61047 5.64357 5.66500 5.72886 5.73179 5.79949 6.01573 6.11876 6.13541 6.18301 6.21853 6.25561 6.35369 6.45588 6.53054 6.65496 6.78713 6.84867 7.35614 7.48972 7.68997 8.12001 8.41446 9.52725 10.10029 10.45153 11.45053 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.003502 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.620090 B = 7993.262147 C = 9427.249938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.061 3.939 3 N -0.480 5.480 4 C 0.148 3.852 5 C -0.089 4.089 6 C -0.299 4.299 7 C 0.598 3.402 8 O -0.527 6.527 9 N -0.708 5.708 10 C 0.156 3.844 11 H 0.091 0.909 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.121 4.121 15 C -0.111 4.111 16 C -0.103 4.103 17 H 0.088 0.912 18 C 0.160 3.840 19 N -0.730 5.730 20 C -0.239 4.239 21 H 0.068 0.932 22 C -0.012 4.012 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 S 0.164 5.836 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.018 0.982 45 H 0.016 0.984 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.048 13.864 14.689 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.215 4.215 3 N -0.196 5.196 4 C 0.010 3.990 5 C -0.147 4.147 6 C -0.423 4.423 7 C 0.383 3.617 8 O -0.406 6.406 9 N -0.360 5.360 10 C 0.051 3.949 11 H 0.110 0.890 12 C -0.167 4.167 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.149 4.149 16 C -0.122 4.122 17 H 0.106 0.894 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.371 4.371 21 H 0.086 0.914 22 C -0.208 4.208 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 S 0.422 5.578 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.036 0.964 45 H 0.034 0.966 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.952 13.805 14.509 21.937 hybrid contribution -0.091 -0.147 -0.943 0.959 sum -9.044 13.658 13.566 21.268 Atomic orbital electron populations 1.20541 0.84663 1.04738 1.04231 1.27383 1.02123 0.91245 1.00710 1.66096 1.04473 1.31306 1.17733 1.20663 0.89850 0.93699 0.94739 1.20658 0.96903 0.93397 1.03787 1.25508 0.98113 0.97193 1.21451 1.16632 0.85816 0.82747 0.76472 1.90766 1.44208 1.54912 1.50697 1.46025 1.09758 1.05859 1.74320 1.21031 0.81664 0.95806 0.96386 0.89049 1.21908 0.99747 0.99896 0.95131 1.21499 0.99912 0.95462 0.98530 1.21588 1.01621 0.96253 0.96361 1.21540 0.98122 1.01073 0.94128 1.21647 1.01483 0.92941 0.96098 0.89365 1.20638 0.96977 0.89563 0.89618 1.42347 1.75206 1.07134 1.12768 1.19175 1.33433 0.95219 0.89231 0.91389 1.24711 1.01835 0.95990 0.98297 1.69644 1.50415 1.01684 1.36514 0.86284 0.78350 0.76821 0.84837 1.21278 1.21668 1.21315 1.84040 0.96528 1.11153 1.66124 0.89128 0.88895 0.89595 0.90068 0.90928 0.88099 0.76560 0.91646 0.90779 0.92473 0.92353 0.92202 0.91772 0.92916 0.90097 0.96377 0.96605 0.78184 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.01 0.38 -0.13 16 2 C 0.06 0.62 7.39 -13.29 -0.10 0.52 16 3 N -0.48 -5.97 10.50 -7.70 -0.08 -6.05 16 4 C 0.15 1.93 6.79 -83.89 -0.57 1.36 16 5 C -0.09 -1.02 9.69 36.01 0.35 -0.67 16 6 C -0.30 -3.92 6.48 -37.09 -0.24 -4.16 16 7 C 0.60 8.61 7.74 -12.85 -0.10 8.51 16 8 O -0.53 -8.61 13.93 5.20 0.07 -8.54 16 9 N -0.71 -9.45 3.61 -55.11 -0.20 -9.65 16 10 C 0.16 2.13 2.23 -67.93 -0.15 1.98 16 11 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 12 C -0.13 -1.51 5.60 -26.73 -0.15 -1.66 16 13 C -0.12 -1.26 5.77 -26.73 -0.15 -1.42 16 14 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 15 C -0.11 -1.58 4.91 -26.73 -0.13 -1.71 16 16 C -0.10 -1.57 2.02 -90.62 -0.18 -1.76 16 17 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 18 C 0.16 3.16 5.42 -4.04 -0.02 3.13 16 19 N -0.73 -18.04 5.33 -59.91 -0.32 -18.36 16 20 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 24 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 S 0.16 1.72 22.31 -107.50 -2.40 -0.68 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.26 6.01 -51.93 -0.31 0.95 16 35 H 0.40 5.03 5.85 -40.82 -0.24 4.79 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.72 6.50 -51.93 -0.34 0.38 16 43 H 0.08 1.37 7.18 -51.93 -0.37 1.00 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.32 7.61 -51.93 -0.40 -0.07 16 46 H 0.38 9.86 6.85 -40.82 -0.28 9.58 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -32.15 384.55 -10.25 -42.40 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.34 Total: 9.72 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.48 Total: -4.84 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.13 Total: -61.19 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.40 Total: -0.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.15 -10.25 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.472 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds