Wall clock time and date at job start Tue Mar 31 2020 21:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29427 * 124.80589 * 2 1 4 4 C 1.30944 * 117.36058 * 179.69369 * 3 2 1 5 5 C 1.50703 * 122.90400 * 180.31044 * 4 3 2 6 6 C 1.35666 * 114.19228 * 0.48253 * 4 3 2 7 7 C 1.46681 * 126.12680 * 179.82594 * 6 4 3 8 8 O 1.21688 * 120.00279 * 359.71419 * 7 6 4 9 9 N 1.34777 * 119.99780 * 179.71930 * 7 6 4 10 10 C 1.46494 * 120.00106 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47008 * 324.99143 * 10 9 7 12 12 C 1.53003 * 109.47672 * 84.99461 * 10 9 7 13 13 C 1.52994 * 109.46945 * 59.99777 * 12 10 9 14 14 C 1.53005 * 109.47099 * 60.00218 * 13 12 10 15 15 C 1.52996 * 109.47324 * 299.99749 * 14 13 12 16 16 C 1.53004 * 109.47171 * 204.99747 * 10 9 7 17 17 H 1.08999 * 109.47217 * 179.97438 * 16 10 9 18 18 C 1.52996 * 109.47336 * 59.99365 * 16 10 9 19 19 N 1.46498 * 109.47059 * 175.00083 * 18 16 10 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 S 1.70959 * 124.80058 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47321 * 270.04384 * 1 2 3 30 30 H 1.09010 * 109.46511 * 30.04176 * 1 2 3 31 31 H 1.08999 * 109.47283 * 150.03568 * 1 2 3 32 32 H 1.09005 * 109.46476 * 270.19060 * 5 4 3 33 33 H 1.08995 * 109.47401 * 30.18356 * 5 4 3 34 34 H 1.08997 * 109.47588 * 150.19511 * 5 4 3 35 35 H 0.97000 * 120.00211 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.46731 * 300.00266 * 12 10 9 37 37 H 1.08994 * 109.46929 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47864 * 300.00473 * 13 12 10 39 39 H 1.09001 * 109.47328 * 180.02562 * 13 12 10 40 40 H 1.09005 * 109.47165 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.46900 * 60.00147 * 14 13 12 42 42 H 1.09000 * 109.47017 * 300.00357 * 15 14 13 43 43 H 1.08995 * 109.47011 * 179.97438 * 15 14 13 44 44 H 1.09004 * 109.47066 * 55.00351 * 18 16 10 45 45 H 1.08994 * 109.46974 * 295.00498 * 18 16 10 46 46 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 47 47 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0627 0.0000 4 6 3.5441 0.8930 0.0062 5 6 4.5198 2.0416 0.0139 6 6 3.9351 -0.4061 0.0015 7 6 5.3188 -0.8928 0.0029 8 8 6.2425 -0.1005 0.0035 9 7 5.5672 -2.2174 0.0034 10 6 6.9491 -2.7036 0.0053 11 1 7.5720 -2.0302 -0.5834 12 6 7.4701 -2.7540 1.4431 13 6 6.5958 -3.6992 2.2694 14 6 6.6438 -5.1019 1.6601 15 6 6.1228 -5.0515 0.2225 16 6 6.9972 -4.1062 -0.6040 17 1 8.0255 -4.4678 -0.6030 18 6 6.4762 -4.0559 -2.0417 19 7 6.6331 -5.3727 -2.6643 20 6 6.2280 -5.5713 -3.9573 21 1 5.7970 -4.7560 -4.5194 22 6 6.3714 -6.8205 -4.5454 23 7 6.8962 -7.8141 -3.8601 24 14 5.8195 -7.0912 -6.3093 25 1 6.5741 -6.1824 -7.2091 26 1 6.0784 -8.5008 -6.6982 27 1 4.3665 -6.8060 -6.4226 28 16 2.4827 -1.4038 0.0006 29 1 -0.3634 0.0008 1.0276 30 1 -0.3633 0.8897 -0.5145 31 1 -0.3634 -0.8903 -0.5133 32 1 4.7576 2.3230 -1.0120 33 1 4.0755 2.8924 0.5302 34 1 5.4321 1.7400 0.5286 35 1 4.8309 -2.8490 0.0032 36 1 7.4358 -1.7548 1.8771 37 1 8.4984 -3.1153 1.4443 38 1 5.5675 -3.3376 2.2681 39 1 6.9666 -3.7348 3.2938 40 1 6.0212 -5.7754 2.2492 41 1 7.6720 -5.4636 1.6616 42 1 5.0946 -4.6898 0.2211 43 1 6.1575 -6.0507 -0.2117 44 1 7.0428 -3.3165 -2.6078 45 1 5.4219 -3.7797 -2.0365 46 1 7.0199 -6.1050 -2.1593 47 1 6.9967 -8.6869 -4.2712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754350972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:13 Heat of formation + Delta-G solvation = -23.653473 kcal Electronic energy + Delta-G solvation = -27488.420974 eV Core-core repulsion = 23796.382941 eV Total energy + Delta-G solvation = -3692.038033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71044 -40.86456 -39.19008 -36.47676 -34.82113 -34.00758 -33.73167 -31.29170 -31.21915 -30.19774 -29.03687 -26.93108 -24.70564 -24.11980 -23.77492 -22.91714 -22.01957 -20.74313 -20.19030 -19.22766 -18.89837 -18.00396 -16.95322 -16.71333 -16.62508 -16.21943 -15.87642 -15.69727 -15.31836 -15.13302 -15.09052 -14.89903 -14.63356 -14.44636 -14.18031 -14.06731 -13.49295 -13.41536 -13.27294 -13.13715 -12.98958 -12.96151 -12.86571 -12.70969 -12.61856 -12.39881 -12.16347 -11.95618 -11.85849 -11.44584 -11.26233 -11.16472 -11.04059 -10.87019 -10.77773 -10.62035 -10.11225 -9.74625 -9.00055 -7.95770 -5.24195 -0.84549 0.10860 0.48931 1.32105 1.46477 1.48845 1.55145 2.01086 2.06332 2.54964 2.97542 3.37323 3.52475 3.72738 3.77581 3.81492 3.87391 4.03175 4.06669 4.21519 4.39724 4.45466 4.47430 4.51650 4.55585 4.63302 4.64055 4.65948 4.68159 4.72540 4.86705 4.88885 4.98956 5.05400 5.08771 5.14994 5.24775 5.25586 5.28333 5.33935 5.41918 5.46155 5.50241 5.56917 6.26222 6.32740 6.54741 7.02432 7.33644 8.08117 8.33657 9.27172 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.003502 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.620090 B = 7993.262147 C = 9427.249938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.070 3.930 3 N -0.504 5.504 4 C 0.143 3.857 5 C -0.086 4.086 6 C -0.331 4.331 7 C 0.597 3.403 8 O -0.553 6.553 9 N -0.704 5.704 10 C 0.162 3.838 11 H 0.075 0.925 12 C -0.122 4.122 13 C -0.110 4.110 14 C -0.114 4.114 15 C -0.106 4.106 16 C -0.089 4.089 17 H 0.084 0.916 18 C 0.162 3.838 19 N -0.738 5.738 20 C -0.249 4.249 21 H 0.069 0.931 22 C -0.068 4.068 23 N -0.965 5.965 24 Si 0.970 3.030 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.277 1.277 28 S 0.190 5.810 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.402 0.598 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.005 0.995 45 H 0.018 0.982 46 H 0.377 0.623 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 14.201 15.563 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.205 4.205 3 N -0.220 5.220 4 C 0.004 3.996 5 C -0.144 4.144 6 C -0.455 4.455 7 C 0.384 3.616 8 O -0.434 6.434 9 N -0.355 5.355 10 C 0.057 3.943 11 H 0.093 0.907 12 C -0.160 4.160 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.144 4.144 16 C -0.109 4.109 17 H 0.102 0.898 18 C 0.035 3.965 19 N -0.382 5.382 20 C -0.381 4.381 21 H 0.086 0.914 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.798 3.202 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.203 1.203 28 S 0.448 5.552 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.239 0.761 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.023 0.977 45 H 0.036 0.964 46 H 0.210 0.790 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.688 14.159 15.393 23.487 hybrid contribution 0.362 -0.195 -1.220 1.287 sum -10.326 13.964 14.173 22.416 Atomic orbital electron populations 1.20802 0.81692 1.05984 1.05919 1.28161 1.03739 0.90596 0.97997 1.66175 1.04225 1.32215 1.19367 1.20904 0.90517 0.94004 0.94158 1.20622 0.96384 0.93677 1.03760 1.25426 0.98411 0.98039 1.23585 1.16817 0.86287 0.82630 0.75894 1.90745 1.45239 1.55466 1.51979 1.45963 1.09650 1.05781 1.74134 1.20905 0.81856 0.93988 0.97532 0.90735 1.21858 1.00466 1.00187 0.93524 1.21462 0.99829 0.94252 0.99190 1.21535 1.01852 0.97266 0.94443 1.21464 0.98394 0.98906 0.95596 1.21484 1.01224 0.94522 0.93626 0.89773 1.20725 0.96933 0.86944 0.91901 1.42491 1.74938 1.08614 1.12132 1.19530 1.32750 0.95289 0.90511 0.91350 1.25481 1.02564 0.95860 1.02188 1.69791 1.51860 1.01867 1.38043 0.85278 0.78242 0.76401 0.80236 1.20783 1.21863 1.20335 1.83882 0.95015 1.10570 1.65771 0.87002 0.88246 0.87677 0.90092 0.89492 0.89285 0.76103 0.91943 0.89824 0.92348 0.90357 0.90797 0.91581 0.92303 0.92951 0.97744 0.96406 0.78998 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.46 71.24 0.75 -0.04 16 2 C 0.07 1.28 7.39 88.46 0.65 1.94 16 3 N -0.50 -11.90 10.50 -178.28 -1.87 -13.78 16 4 C 0.14 3.67 6.79 42.10 0.29 3.96 16 5 C -0.09 -1.99 9.69 71.24 0.69 -1.30 16 6 C -0.33 -8.57 6.48 23.88 0.15 -8.42 16 7 C 0.60 17.29 7.74 86.45 0.67 17.96 16 8 O -0.55 -18.49 13.93 -4.31 -0.06 -18.55 16 9 N -0.70 -18.61 3.61 -446.50 -1.61 -20.22 16 10 C 0.16 4.40 2.23 44.99 0.10 4.50 16 11 H 0.07 2.30 7.58 -2.39 -0.02 2.29 16 12 C -0.12 -2.72 5.60 30.59 0.17 -2.55 16 13 C -0.11 -2.13 5.77 30.59 0.18 -1.95 16 14 C -0.11 -2.45 5.92 30.59 0.18 -2.27 16 15 C -0.11 -2.96 4.91 30.60 0.15 -2.81 16 16 C -0.09 -2.75 2.02 -10.79 -0.02 -2.77 16 17 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 18 C 0.16 6.50 5.42 86.38 0.47 6.97 16 19 N -0.74 -37.16 5.33 -343.46 -1.83 -39.00 16 20 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 21 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 24 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 28 S 0.19 3.69 22.31 -56.49 -1.26 2.43 16 29 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.28 6.01 -2.39 -0.01 2.27 16 35 H 0.40 9.90 5.85 -92.71 -0.54 9.36 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.14 7.60 -2.39 -0.02 1.12 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 1.55 6.50 -2.39 -0.02 1.54 16 43 H 0.05 1.79 7.18 -2.39 -0.02 1.77 16 44 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 45 H 0.02 0.72 7.61 -2.39 -0.02 0.70 16 46 H 0.38 19.86 6.85 -92.71 -0.63 19.22 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -69.42 384.55 1.22 -68.20 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.18 Total: 34.21 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.73 Total: -3.36 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.03 Total: -130.98 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.26 Total: 2.43 kcal Total: -69.42 1.22 -68.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.546 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds