Wall clock time and date at job start Tue Mar 31 2020 21:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47460 * 2 1 4 4 N 1.29025 * 124.91840 * 89.99704 * 3 2 1 5 5 C 1.31772 * 117.12601 * 179.97438 * 4 3 2 6 6 C 1.50704 * 122.75222 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47186 * 305.02998 * 6 5 4 8 8 O 1.21280 * 119.99864 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00021 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99897 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47182 * 179.97438 * 10 9 7 12 12 C 1.53349 * 109.40914 * 295.12108 * 11 10 9 13 13 C 1.53196 * 109.15353 * 178.68028 * 12 11 10 14 14 N 1.46928 * 108.89135 * 54.57497 * 13 12 11 15 15 C 1.36936 * 120.63013 * 126.29699 * 14 13 12 16 16 H 1.07999 * 120.00022 * 331.83633 * 15 14 13 17 17 C 1.38813 * 120.00005 * 151.82709 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.09585 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.09475 * 17 15 14 20 20 H 1.48494 * 109.47083 * 60.00061 * 19 17 15 21 21 H 1.48500 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47024 * 300.00112 * 19 17 15 23 23 C 1.46924 * 118.73859 * 306.32337 * 14 13 12 24 24 C 1.53044 * 109.46299 * 174.99968 * 11 10 9 25 25 C 1.33641 * 114.50278 * 0.23456 * 5 4 3 26 26 S 1.70978 * 124.91430 * 270.00280 * 3 2 1 27 27 H 1.08999 * 109.46614 * 60.00136 * 1 2 3 28 28 H 1.08992 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46991 * 300.00279 * 1 2 3 30 30 H 1.09000 * 109.46991 * 239.99720 * 2 1 3 31 31 H 1.08997 * 109.46946 * 120.00270 * 2 1 3 32 32 H 1.08995 * 109.47436 * 185.02659 * 6 5 4 33 33 H 1.09007 * 109.47007 * 65.02762 * 6 5 4 34 34 H 0.96997 * 120.00027 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47339 * 59.99624 * 10 9 7 36 36 H 1.08997 * 109.47091 * 300.00023 * 10 9 7 37 37 H 1.09001 * 109.46084 * 55.02802 * 11 10 9 38 38 H 1.08998 * 109.68701 * 58.71517 * 12 11 10 39 39 H 1.09000 * 109.47234 * 298.51585 * 12 11 10 40 40 H 1.08996 * 109.58345 * 294.72319 * 13 12 11 41 41 H 1.08994 * 109.58644 * 174.43734 * 13 12 11 42 42 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.58664 * 173.39523 * 23 14 13 44 44 H 1.08996 * 109.58580 * 293.67452 * 23 14 13 45 45 H 1.08992 * 109.49619 * 61.41723 * 24 11 10 46 46 H 1.08999 * 109.52313 * 301.33737 * 24 11 10 47 47 H 1.07997 * 126.04011 * 179.76532 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7144 3.3478 0.8793 6 6 3.0404 4.2716 2.0245 7 6 1.8452 4.3836 2.9355 8 8 0.8286 3.7738 2.6797 9 7 1.9061 5.1615 4.0344 10 6 0.7444 5.2699 4.9203 11 6 1.0758 6.2069 6.0835 12 6 2.1858 5.5843 6.9390 13 6 2.5359 6.5417 8.0826 14 7 1.3096 6.8651 8.8244 15 6 1.2468 6.6858 10.1806 16 1 1.8536 5.9280 10.6537 17 6 0.4033 7.4781 10.9471 18 7 -0.0774 8.5987 10.4516 19 14 -0.0495 6.9539 12.6820 20 1 1.1828 6.8429 13.5031 21 1 -0.9564 7.9643 13.2835 22 1 -0.7354 5.6375 12.6382 23 6 0.1518 7.3841 8.0836 24 6 -0.1748 6.4187 6.9399 25 6 2.8383 3.7115 -0.4007 26 16 2.3586 2.3434 -1.4020 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2942 5.2574 1.6352 33 1 3.8871 3.8726 2.5833 34 1 2.7193 5.6489 4.2392 35 1 0.4908 4.2838 5.3094 36 1 -0.1024 5.6689 4.3618 37 1 1.4145 7.1661 5.6921 38 1 3.0698 5.4123 6.3250 39 1 1.8387 4.6368 7.3512 40 1 2.9679 7.4555 7.6747 41 1 3.2527 6.0654 8.7513 42 1 -0.6671 9.1521 10.9872 43 1 -0.7053 7.4614 8.7525 44 1 0.3886 8.3677 7.6780 45 1 -0.4998 5.4633 7.3518 46 1 -0.9705 6.8392 6.3249 47 1 3.1743 4.6737 -0.7581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330925017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:39 Heat of formation + Delta-G solvation = 10.494064 kcal Electronic energy + Delta-G solvation = -26249.371195 eV Core-core repulsion = 22558.813911 eV Total energy + Delta-G solvation = -3690.557285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.49617 -39.23200 -37.72297 -34.92720 -34.53360 -32.87058 -31.55164 -30.68445 -29.72088 -28.55483 -26.59205 -25.58746 -23.96678 -22.45611 -22.09826 -21.05813 -20.51538 -19.90151 -19.10263 -18.02441 -17.03999 -16.61123 -16.05220 -15.56243 -15.37768 -14.93227 -14.78590 -14.56157 -14.15520 -13.86151 -13.71964 -13.54789 -13.42469 -13.25173 -13.17463 -12.61787 -12.42580 -12.34498 -12.22398 -11.95215 -11.80133 -11.61666 -11.41699 -11.32183 -10.97150 -10.70879 -10.49572 -10.24536 -10.20994 -9.98561 -9.84786 -9.75277 -9.58956 -9.52785 -9.42507 -8.96543 -8.90429 -8.45520 -6.65867 -5.78064 -3.20463 0.47458 1.12382 1.47700 2.52950 2.71121 3.34436 3.39189 3.44877 3.46490 3.74636 4.44586 4.50622 4.72915 4.77075 4.86702 4.90801 4.96039 5.11488 5.16027 5.24230 5.26591 5.39393 5.41750 5.43471 5.50118 5.62187 5.66038 5.84775 5.89155 5.95440 5.97621 6.07378 6.17273 6.33399 6.45588 6.51213 6.61532 6.70946 6.77865 6.82659 6.99270 7.37987 7.55673 7.60667 7.66814 7.80221 8.30287 8.46526 9.22608 9.86169 10.42924 11.30463 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.001870 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.261285 B =14973.070641 C =15382.354047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.057 3.943 4 N -0.444 5.444 5 C 0.092 3.908 6 C -0.069 4.069 7 C 0.514 3.486 8 O -0.526 6.526 9 N -0.727 5.727 10 C 0.126 3.874 11 C -0.089 4.089 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.172 3.828 24 C -0.133 4.133 25 C -0.260 4.260 26 S 0.104 5.896 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.254 0.746 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 -11.610 -25.257 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.222 4.222 4 N -0.157 5.157 5 C -0.041 4.041 6 C -0.112 4.112 7 C 0.298 3.702 8 O -0.401 6.401 9 N -0.380 5.380 10 C 0.002 3.998 11 C -0.108 4.108 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.046 3.954 24 C -0.173 4.173 25 C -0.399 4.399 26 S 0.359 5.641 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.733 -12.353 -25.908 29.269 hybrid contribution 0.360 0.792 1.681 1.893 sum 6.092 -11.561 -24.227 27.527 Atomic orbital electron populations 1.21769 0.93330 1.02486 1.03029 1.20222 0.96945 0.87486 1.04075 1.27081 1.02878 1.01734 0.90498 1.65981 1.12949 1.05614 1.31187 1.19561 1.00141 0.91342 0.93023 1.20256 0.98306 0.99028 0.93568 1.20228 0.89265 0.79189 0.81489 1.90729 1.32209 1.44298 1.72880 1.46064 1.17703 1.48848 1.25357 1.21541 0.87409 1.00404 0.90415 1.21358 0.97928 0.97649 0.93891 1.22125 0.96598 1.00122 0.97757 1.20886 0.89933 0.94934 0.92382 1.44038 1.07797 1.76132 1.03547 1.19140 1.23966 1.12604 0.82480 0.91817 1.25047 1.01855 0.94987 0.97806 1.70018 1.35945 1.11549 1.37289 0.86372 0.78211 0.77757 0.84443 1.20899 1.21648 1.21030 1.20761 0.92098 0.91715 0.90849 1.22171 0.94963 1.01861 0.98261 1.26738 1.13064 1.04383 0.95673 1.83865 1.60987 1.05890 1.13321 0.92518 0.91432 0.91483 0.89808 0.88745 0.87295 0.87127 0.76616 0.91736 0.92018 0.91366 0.93416 0.92207 0.96639 0.92938 0.93598 0.89448 0.96446 0.92417 0.93109 0.80579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 37.16 0.37 -0.78 16 2 C -0.05 -0.36 6.52 -27.88 -0.18 -0.54 16 3 C 0.06 0.60 6.64 -13.46 -0.09 0.51 16 4 N -0.44 -5.83 9.68 -8.06 -0.08 -5.91 16 5 C 0.09 1.05 5.64 -84.23 -0.47 0.57 16 6 C -0.07 -0.65 6.19 -29.03 -0.18 -0.83 16 7 C 0.51 6.81 7.80 -10.99 -0.09 6.73 16 8 O -0.53 -9.33 15.44 5.56 0.09 -9.24 16 9 N -0.73 -8.78 5.27 -60.30 -0.32 -9.10 16 10 C 0.13 1.82 5.06 -4.05 -0.02 1.80 16 11 C -0.09 -1.41 2.19 -90.42 -0.20 -1.60 16 12 C -0.13 -2.08 5.27 -26.45 -0.14 -2.22 16 13 C 0.15 2.95 6.51 -3.71 -0.02 2.92 16 14 N -0.59 -14.69 2.99 -172.32 -0.52 -15.21 16 15 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 16 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.20 11.20 55.49 0.62 -25.57 16 19 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 24 C -0.13 -2.48 5.36 -26.61 -0.14 -2.62 16 25 C -0.26 -2.37 11.07 29.12 0.32 -2.05 16 26 S 0.10 0.88 23.18 -107.50 -2.49 -1.61 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.11 0.67 8.03 -51.93 -0.42 0.25 16 33 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 34 H 0.40 3.79 7.65 -40.82 -0.31 3.48 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.64 7.16 -51.93 -0.37 0.27 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -34.07 391.69 -10.64 -44.71 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.72 Total: 0.50 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.10 Total: -1.19 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.29 Total: -55.79 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.07 -10.64 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330925017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.200 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds