Wall clock time and date at job start Tue Mar 31 2020 21:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47460 * 2 1 4 4 N 1.29025 * 124.91840 * 89.99704 * 3 2 1 5 5 C 1.31772 * 117.12601 * 179.97438 * 4 3 2 6 6 C 1.50704 * 122.75222 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47186 * 305.02998 * 6 5 4 8 8 O 1.21280 * 119.99864 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00021 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99897 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47182 * 179.97438 * 10 9 7 12 12 C 1.53349 * 109.40914 * 295.12108 * 11 10 9 13 13 C 1.53196 * 109.15353 * 178.68028 * 12 11 10 14 14 N 1.46928 * 108.89135 * 54.57497 * 13 12 11 15 15 C 1.36936 * 120.63013 * 126.29699 * 14 13 12 16 16 H 1.07999 * 120.00022 * 331.83633 * 15 14 13 17 17 C 1.38813 * 120.00005 * 151.82709 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.09585 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.09475 * 17 15 14 20 20 H 1.48494 * 109.47083 * 60.00061 * 19 17 15 21 21 H 1.48500 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47024 * 300.00112 * 19 17 15 23 23 C 1.46924 * 118.73859 * 306.32337 * 14 13 12 24 24 C 1.53044 * 109.46299 * 174.99968 * 11 10 9 25 25 C 1.33641 * 114.50278 * 0.23456 * 5 4 3 26 26 S 1.70978 * 124.91430 * 270.00280 * 3 2 1 27 27 H 1.08999 * 109.46614 * 60.00136 * 1 2 3 28 28 H 1.08992 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46991 * 300.00279 * 1 2 3 30 30 H 1.09000 * 109.46991 * 239.99720 * 2 1 3 31 31 H 1.08997 * 109.46946 * 120.00270 * 2 1 3 32 32 H 1.08995 * 109.47436 * 185.02659 * 6 5 4 33 33 H 1.09007 * 109.47007 * 65.02762 * 6 5 4 34 34 H 0.96997 * 120.00027 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47339 * 59.99624 * 10 9 7 36 36 H 1.08997 * 109.47091 * 300.00023 * 10 9 7 37 37 H 1.09001 * 109.46084 * 55.02802 * 11 10 9 38 38 H 1.08998 * 109.68701 * 58.71517 * 12 11 10 39 39 H 1.09000 * 109.47234 * 298.51585 * 12 11 10 40 40 H 1.08996 * 109.58345 * 294.72319 * 13 12 11 41 41 H 1.08994 * 109.58644 * 174.43734 * 13 12 11 42 42 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.58664 * 173.39523 * 23 14 13 44 44 H 1.08996 * 109.58580 * 293.67452 * 23 14 13 45 45 H 1.08992 * 109.49619 * 61.41723 * 24 11 10 46 46 H 1.08999 * 109.52313 * 301.33737 * 24 11 10 47 47 H 1.07997 * 126.04011 * 179.76532 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7144 3.3478 0.8793 6 6 3.0404 4.2716 2.0245 7 6 1.8452 4.3836 2.9355 8 8 0.8286 3.7738 2.6797 9 7 1.9061 5.1615 4.0344 10 6 0.7444 5.2699 4.9203 11 6 1.0758 6.2069 6.0835 12 6 2.1858 5.5843 6.9390 13 6 2.5359 6.5417 8.0826 14 7 1.3096 6.8651 8.8244 15 6 1.2468 6.6858 10.1806 16 1 1.8536 5.9280 10.6537 17 6 0.4033 7.4781 10.9471 18 7 -0.0774 8.5987 10.4516 19 14 -0.0495 6.9539 12.6820 20 1 1.1828 6.8429 13.5031 21 1 -0.9564 7.9643 13.2835 22 1 -0.7354 5.6375 12.6382 23 6 0.1518 7.3841 8.0836 24 6 -0.1748 6.4187 6.9399 25 6 2.8383 3.7115 -0.4007 26 16 2.3586 2.3434 -1.4020 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2942 5.2574 1.6352 33 1 3.8871 3.8726 2.5833 34 1 2.7193 5.6489 4.2392 35 1 0.4908 4.2838 5.3094 36 1 -0.1024 5.6689 4.3618 37 1 1.4145 7.1661 5.6921 38 1 3.0698 5.4123 6.3250 39 1 1.8387 4.6368 7.3512 40 1 2.9679 7.4555 7.6747 41 1 3.2527 6.0654 8.7513 42 1 -0.6671 9.1521 10.9872 43 1 -0.7053 7.4614 8.7525 44 1 0.3886 8.3677 7.6780 45 1 -0.4998 5.4633 7.3518 46 1 -0.9705 6.8392 6.3249 47 1 3.1743 4.6737 -0.7581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330925017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:38 Heat of formation + Delta-G solvation = -11.526232 kcal Electronic energy + Delta-G solvation = -26250.326067 eV Core-core repulsion = 22558.813911 eV Total energy + Delta-G solvation = -3691.512156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32699 -40.25227 -39.21496 -36.36454 -35.20944 -34.46130 -32.74605 -32.02256 -31.36338 -29.45265 -28.04217 -26.33696 -25.62363 -23.86868 -23.14388 -22.50700 -21.53562 -20.72546 -20.56040 -18.89325 -18.62356 -17.81363 -17.05501 -16.74150 -16.52980 -16.21562 -15.80079 -15.52371 -15.32252 -15.28705 -15.09878 -14.79534 -14.60213 -14.51580 -14.01934 -13.90933 -13.80094 -13.57986 -13.21797 -13.04322 -12.96012 -12.76172 -12.55682 -12.55112 -12.32906 -12.27849 -12.03120 -12.02323 -11.84568 -11.61793 -11.26222 -11.10035 -10.86921 -10.52721 -10.48526 -10.28700 -10.02617 -9.62680 -8.66442 -7.87323 -5.32144 -0.21064 0.48058 0.79248 1.45610 1.48459 1.54832 1.72876 1.76491 2.39741 2.51147 3.12118 3.26977 3.71762 3.75116 3.85027 3.94057 4.04068 4.11626 4.13560 4.22537 4.30709 4.36532 4.51649 4.53443 4.54256 4.66103 4.70181 4.72830 4.77334 4.83813 4.93570 4.94107 5.02630 5.04372 5.14511 5.19234 5.28919 5.30328 5.31232 5.40336 5.50138 5.55861 5.65900 5.79183 6.40154 6.63694 6.90621 7.15946 7.34963 7.88543 8.39085 9.18659 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.001870 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.261285 B =14973.070641 C =15382.354047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.034 3.966 4 N -0.487 5.487 5 C 0.060 3.940 6 C -0.061 4.061 7 C 0.511 3.489 8 O -0.576 6.576 9 N -0.716 5.716 10 C 0.140 3.860 11 C -0.076 4.076 12 C -0.114 4.114 13 C 0.140 3.860 14 N -0.613 5.613 15 C -0.263 4.263 16 H 0.064 0.936 17 C -0.052 4.052 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.281 1.281 23 C 0.178 3.822 24 C -0.123 4.123 25 C -0.257 4.257 26 S 0.143 5.857 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.416 0.584 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.021 0.979 41 H 0.050 0.950 42 H 0.250 0.750 43 H 0.050 0.950 44 H 0.001 0.999 45 H 0.046 0.954 46 H 0.067 0.933 47 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.433 -12.165 -27.369 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.245 4.245 4 N -0.202 5.202 5 C -0.072 4.072 6 C -0.103 4.103 7 C 0.298 3.702 8 O -0.455 6.455 9 N -0.369 5.369 10 C 0.015 3.985 11 C -0.095 4.095 12 C -0.153 4.153 13 C 0.014 3.986 14 N -0.336 5.336 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.247 4.247 18 N -0.580 5.580 19 Si 0.793 3.207 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.207 1.207 23 C 0.052 3.948 24 C -0.163 4.163 25 C -0.396 4.396 26 S 0.398 5.602 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.253 0.747 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.019 0.981 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.483 -12.914 -28.035 31.760 hybrid contribution -0.137 0.968 2.267 2.469 sum 7.346 -11.946 -25.767 29.336 Atomic orbital electron populations 1.21729 0.93555 1.03344 1.01515 1.20341 0.96672 0.86685 1.05125 1.27490 1.03024 1.02767 0.91172 1.65994 1.14310 1.06926 1.32956 1.19915 1.01485 0.91424 0.94423 1.20349 0.96542 1.00846 0.92583 1.20948 0.89755 0.77960 0.81559 1.90714 1.34474 1.46277 1.74058 1.45906 1.17529 1.48776 1.24711 1.21169 0.88349 0.98867 0.90080 1.21185 0.96108 0.98534 0.93659 1.21983 0.98315 0.98145 0.96810 1.21078 0.88310 0.95925 0.93246 1.44325 1.09707 1.76322 1.03292 1.19461 1.23626 1.12188 0.84019 0.91845 1.25785 1.02297 0.95155 1.01494 1.70166 1.36741 1.12599 1.38517 0.85381 0.77923 0.77105 0.80295 1.19993 1.21977 1.20717 1.20559 0.90600 0.92251 0.91397 1.21980 0.97142 0.99901 0.97232 1.27164 1.11640 1.05638 0.95186 1.83656 1.59828 1.04985 1.11728 0.92124 0.89400 0.94760 0.87027 0.89393 0.83517 0.85361 0.74705 0.93455 0.92464 0.90151 0.89383 0.93569 0.96127 0.93097 0.94132 0.93189 0.98127 0.93525 0.91416 0.77660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.90 71.98 0.71 -1.47 16 2 C -0.05 -0.71 6.52 29.85 0.19 -0.51 16 3 C 0.03 0.69 6.64 88.52 0.59 1.27 16 4 N -0.49 -12.57 9.68 -179.40 -1.74 -14.31 16 5 C 0.06 1.25 5.64 41.53 0.23 1.49 16 6 C -0.06 -0.98 6.19 29.10 0.18 -0.80 16 7 C 0.51 12.65 7.80 87.66 0.68 13.34 16 8 O -0.58 -20.36 15.44 -3.03 -0.05 -20.40 16 9 N -0.72 -15.45 5.27 -463.08 -2.44 -17.89 16 10 C 0.14 3.82 5.06 86.38 0.44 4.26 16 11 C -0.08 -2.26 2.19 -10.66 -0.02 -2.28 16 12 C -0.11 -3.48 5.27 30.78 0.16 -3.32 16 13 C 0.14 5.52 6.51 86.36 0.56 6.08 16 14 N -0.61 -30.68 2.99 -699.11 -2.09 -32.77 16 15 C -0.26 -14.59 9.58 84.03 0.81 -13.78 16 16 H 0.06 3.45 7.88 -2.91 -0.02 3.42 16 17 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 18 N -0.93 -55.67 11.20 21.65 0.24 -55.43 16 19 Si 0.96 45.43 29.59 68.60 2.03 47.46 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 C 0.18 8.54 5.30 86.36 0.46 9.00 16 24 C -0.12 -4.57 5.36 30.67 0.16 -4.40 16 25 C -0.26 -4.03 11.07 66.78 0.74 -3.29 16 26 S 0.14 2.13 23.18 -56.49 -1.31 0.82 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.15 1.15 8.03 -2.39 -0.02 1.13 16 33 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.42 6.27 7.65 -92.71 -0.71 5.56 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.02 7.16 -2.39 -0.02 2.00 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 42 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.05 2.76 6.06 -2.39 -0.01 2.75 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -77.45 391.69 1.21 -76.24 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.25 Total: 13.21 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.31 Total: 3.06 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -6.03 Total: -120.39 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.40 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.31 Total: 0.82 kcal Total: -77.45 1.21 -76.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330925017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.716 kcal (2) G-P(sol) polarization free energy of solvation -77.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds