Wall clock time and date at job start Tue Mar 31 2020 20:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29022 * 124.91810 * 2 1 4 4 C 1.31779 * 117.12921 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.75442 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.46973 * 305.02733 * 5 4 3 7 7 C 1.50702 * 109.46973 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00110 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00144 * 180.02562 * 7 6 5 10 10 C 1.46936 * 120.62793 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.76062 * 233.59589 * 10 9 7 12 12 C 1.53037 * 109.31476 * 305.34151 * 11 10 9 13 13 H 1.09004 * 109.46460 * 301.38172 * 12 11 10 14 14 N 1.46499 * 109.46158 * 181.40009 * 12 11 10 15 15 C 1.36932 * 119.99549 * 84.97625 * 14 12 11 16 16 H 1.08003 * 120.00354 * 0.02562 * 15 14 12 17 17 C 1.38817 * 120.00011 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00154 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99635 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99668 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99848 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99841 * 19 17 15 23 23 C 1.53044 * 109.52644 * 61.39023 * 12 11 10 24 24 C 1.46923 * 120.63113 * 179.97438 * 9 7 6 25 25 H 1.08998 * 109.70699 * 6.55694 * 24 9 7 26 26 C 1.52999 * 109.58602 * 246.19637 * 24 9 7 27 27 C 1.33646 * 114.49525 * 0.23246 * 4 3 2 28 28 S 1.70979 * 124.91521 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.46964 * 90.00072 * 1 2 3 30 30 H 1.08993 * 109.47577 * 210.00080 * 1 2 3 31 31 H 1.09005 * 109.47104 * 330.00574 * 1 2 3 32 32 H 1.08992 * 109.46951 * 185.02520 * 5 4 3 33 33 H 1.09005 * 109.46785 * 65.02853 * 5 4 3 34 34 H 1.09004 * 109.47575 * 59.99681 * 6 5 4 35 35 H 1.09005 * 109.47463 * 299.99705 * 6 5 4 36 36 H 1.08994 * 109.58437 * 353.37502 * 10 9 7 37 37 H 1.08997 * 109.58204 * 113.79917 * 10 9 7 38 38 H 1.09004 * 109.48444 * 185.40309 * 11 10 9 39 39 H 1.08996 * 109.51377 * 65.30518 * 11 10 9 40 40 H 0.96993 * 120.00302 * 264.97590 * 14 12 11 41 41 H 0.96998 * 119.99442 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.49749 * 58.57893 * 23 12 11 43 43 H 1.09000 * 109.50082 * 178.64777 * 23 12 11 44 44 H 1.08996 * 109.47501 * 300.71501 * 26 24 9 45 45 H 1.09007 * 109.46939 * 60.71696 * 26 24 9 46 46 H 1.09004 * 109.47207 * 180.70758 * 26 24 9 47 47 H 1.07996 * 126.03104 * 179.76803 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0246 0.0000 6 6 4.2334 2.9494 -1.1819 7 6 5.2126 4.0949 -1.1820 8 8 6.0642 4.1650 -0.3212 9 7 5.1415 5.0422 -2.1382 10 6 4.1145 4.9719 -3.1866 11 6 4.8000 5.0542 -4.5541 12 6 5.6694 6.3125 -4.6096 13 1 5.0479 7.1912 -4.4371 14 7 6.3003 6.4120 -5.9280 15 6 5.6244 6.9915 -6.9684 16 1 4.6264 7.3754 -6.8170 17 6 6.2224 7.0863 -8.2176 18 7 5.5729 7.6437 -9.2175 19 14 7.9488 6.4229 -8.4793 20 1 8.9386 7.4940 -8.1993 21 1 8.0965 5.9678 -9.8852 22 1 8.1842 5.2793 -7.5617 23 6 6.7522 6.2341 -3.5309 24 6 6.0887 6.1653 -2.1512 25 1 6.8503 6.0127 -1.3866 26 6 5.3400 7.4709 -1.8760 27 6 3.9354 -0.4007 -0.0039 28 16 2.4856 -1.4020 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 5.5448 1.6352 -0.0894 33 1 4.4369 2.5833 0.9313 34 1 3.2193 3.3388 -1.0925 35 1 4.3273 2.3907 -2.1131 36 1 3.5733 4.0294 -3.1053 37 1 3.4206 5.8050 -3.0747 38 1 4.0437 5.0998 -5.3378 39 1 5.4249 4.1735 -4.7017 40 1 7.1968 6.0675 -6.0640 41 1 5.9910 7.7103 -10.0903 42 1 7.3585 5.3421 -3.6882 43 1 7.3858 7.1192 -3.5864 44 1 4.5756 7.6192 -2.6388 45 1 4.8687 7.4195 -0.8945 46 1 6.0424 8.3042 -1.8986 47 1 4.9545 -0.7581 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044765809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:11 Heat of formation + Delta-G solvation = 11.137552 kcal Electronic energy + Delta-G solvation = -26815.755389 eV Core-core repulsion = 23125.226008 eV Total energy + Delta-G solvation = -3690.529381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52403 -40.00330 -37.75738 -34.69553 -34.22259 -32.66058 -31.87186 -31.22396 -29.82273 -28.62368 -27.44231 -25.70304 -24.13549 -22.97247 -22.74721 -21.42150 -20.27934 -19.98194 -18.46438 -17.89568 -17.45074 -17.02051 -15.85906 -15.79887 -15.41089 -15.14898 -14.99190 -14.21530 -14.04917 -13.93935 -13.74317 -13.73431 -13.50436 -13.37348 -12.95296 -12.88181 -12.69852 -12.54735 -12.48928 -12.03934 -11.95254 -11.79969 -11.71145 -11.39514 -11.21073 -11.03635 -10.95219 -10.83264 -10.54633 -10.23328 -9.95165 -9.77886 -9.72810 -9.65135 -9.61023 -8.98747 -8.94448 -8.51444 -7.30707 -5.80227 -3.15861 0.38958 1.03415 1.40575 2.44941 2.69332 3.07640 3.35554 3.38949 3.43602 3.71861 4.42093 4.56497 4.64336 4.78765 4.89708 4.94491 4.94859 5.03369 5.07186 5.07414 5.14976 5.26026 5.29744 5.38223 5.43558 5.47764 5.53588 5.59174 5.70521 5.73984 5.74870 5.81110 5.82864 5.99062 6.01867 6.05569 6.20694 6.26159 6.37182 6.40360 6.57740 6.81864 6.93989 7.44195 7.52240 7.95503 8.23726 8.38975 9.17280 9.90206 10.10079 11.38007 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.002372 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.042665 B =11801.742722 C =12562.106079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 N -0.469 5.469 4 C 0.075 3.925 5 C -0.027 4.027 6 C -0.131 4.131 7 C 0.516 3.484 8 O -0.553 6.553 9 N -0.602 5.602 10 C 0.106 3.894 11 C -0.152 4.152 12 C 0.183 3.817 13 H 0.060 0.940 14 N -0.749 5.749 15 C -0.243 4.243 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.278 1.278 23 C -0.137 4.137 24 C 0.142 3.858 25 H 0.095 0.905 26 C -0.161 4.161 27 C -0.258 4.258 28 S 0.108 5.892 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 -16.368 21.309 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.227 4.227 3 N -0.184 5.184 4 C -0.057 4.057 5 C -0.067 4.067 6 C -0.171 4.171 7 C 0.305 3.695 8 O -0.432 6.432 9 N -0.334 5.334 10 C -0.017 4.017 11 C -0.193 4.193 12 C 0.074 3.926 13 H 0.078 0.922 14 N -0.390 5.390 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.176 4.176 24 C 0.038 3.962 25 H 0.114 0.886 26 C -0.219 4.219 27 C -0.397 4.397 28 S 0.362 5.638 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.260 -16.771 21.588 28.557 hybrid contribution 1.820 0.118 -0.597 1.919 sum -6.439 -16.653 20.991 27.557 Atomic orbital electron populations 1.20464 0.85076 1.04243 1.04100 1.27076 1.01827 0.90895 1.02917 1.66081 1.04515 1.31552 1.16266 1.20321 0.90092 0.94295 1.00984 1.19925 0.95707 0.91827 0.99271 1.21585 1.00163 0.95235 1.00160 1.20593 0.85025 0.83078 0.80810 1.90662 1.37778 1.77107 1.37608 1.48264 1.32971 1.24587 1.27615 1.21862 0.90041 1.02175 0.87650 1.22638 1.00765 1.01113 0.94737 1.20175 0.92449 0.95280 0.84722 0.92194 1.42807 1.16899 1.72478 1.06844 1.19058 0.99820 1.30560 0.87860 0.89187 1.24673 0.97885 1.00736 0.95826 1.69700 1.37470 1.49436 1.01509 0.86562 0.86042 0.78919 0.77046 1.21084 1.21795 1.20383 1.22264 0.99004 1.02459 0.93893 1.21149 0.91432 0.85405 0.98182 0.88649 1.22144 1.01379 0.96718 1.01663 1.26846 1.03186 0.95688 1.13989 1.83979 0.98117 1.12962 1.68711 0.89380 0.90126 0.89152 0.89458 0.89321 0.88061 0.88990 0.90298 0.91216 0.90202 0.92360 0.80692 0.93057 0.92031 0.90532 0.91557 0.92809 0.91365 0.80516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 36.01 0.38 -0.04 16 2 C 0.05 0.44 7.39 -13.46 -0.10 0.34 16 3 N -0.47 -5.05 10.34 -8.06 -0.08 -5.13 16 4 C 0.07 0.77 6.08 -84.22 -0.51 0.26 16 5 C -0.03 -0.28 5.00 -27.89 -0.14 -0.42 16 6 C -0.13 -1.43 3.95 -27.89 -0.11 -1.54 16 7 C 0.52 7.09 7.70 -10.98 -0.08 7.00 16 8 O -0.55 -9.14 15.40 5.55 0.09 -9.06 16 9 N -0.60 -8.11 2.68 -165.19 -0.44 -8.55 16 10 C 0.11 1.34 5.93 -3.71 -0.02 1.32 16 11 C -0.15 -2.43 5.66 -26.61 -0.15 -2.58 16 12 C 0.18 3.32 2.52 -67.89 -0.17 3.14 16 13 H 0.06 1.12 6.44 -51.93 -0.33 0.79 16 14 N -0.75 -17.12 4.92 -53.38 -0.26 -17.38 16 15 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 16 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 17 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 18 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 19 Si 0.88 21.94 27.73 -169.99 -4.71 17.22 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 23 C -0.14 -2.14 5.02 -26.58 -0.13 -2.28 16 24 C 0.14 1.98 3.20 -67.57 -0.22 1.76 16 25 H 0.10 1.41 7.01 -51.93 -0.36 1.04 16 26 C -0.16 -2.02 9.02 37.16 0.34 -1.68 16 27 C -0.26 -2.25 11.07 29.12 0.32 -1.93 16 28 S 0.11 0.81 23.18 -107.50 -2.49 -1.69 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.89 7.98 -51.93 -0.41 0.47 16 33 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.10 1.07 7.88 -51.93 -0.41 0.66 16 35 H 0.09 0.95 7.69 -51.93 -0.40 0.55 16 36 H 0.08 0.85 5.93 -51.93 -0.31 0.54 16 37 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.07 0.86 5.72 -51.93 -0.30 0.56 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -33.21 385.48 -9.57 -42.78 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.39 Total: 7.52 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.86 Total: -3.41 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.01 Total: -59.18 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.21 -9.57 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044765809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.919 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds