Wall clock time and date at job start Tue Mar 31 2020 20:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30945 * 122.90409 * 2 1 4 4 C 1.29427 * 117.36606 * 180.02562 * 3 2 1 5 5 S 1.70960 * 110.38637 * 359.72306 * 4 3 2 6 6 C 1.35658 * 122.90331 * 180.02562 * 2 1 3 7 7 C 1.46680 * 126.13151 * 359.96554 * 6 2 1 8 8 O 1.21682 * 119.99957 * 359.97438 * 7 6 2 9 9 N 1.34780 * 120.00069 * 180.02562 * 7 6 2 10 10 C 1.46495 * 120.00176 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47499 * 179.97438 * 10 9 7 12 12 H 1.09010 * 109.69926 * 299.99755 * 11 10 9 13 13 C 1.52764 * 109.51366 * 179.88373 * 11 10 9 14 14 C 1.53039 * 109.38115 * 185.70671 * 13 11 10 15 15 C 1.53036 * 109.54271 * 61.23834 * 14 13 11 16 16 C 1.52995 * 109.50009 * 178.67832 * 15 14 13 17 17 C 1.53001 * 109.52565 * 58.59899 * 15 14 13 18 18 C 1.53193 * 109.31054 * 298.63204 * 15 14 13 19 19 N 1.46922 * 109.58852 * 60.35276 * 11 10 9 20 20 C 1.36943 * 120.63050 * 353.42072 * 19 11 10 21 21 H 1.08004 * 119.99515 * 41.07787 * 20 19 11 22 22 C 1.38811 * 119.99961 * 221.08318 * 20 19 11 23 23 N 1.31622 * 119.99727 * 195.38662 * 22 20 19 24 24 Si 1.86794 * 120.00340 * 15.39249 * 22 20 19 25 25 H 1.48495 * 109.47492 * 174.41724 * 24 22 20 26 26 H 1.48503 * 109.47041 * 294.41985 * 24 22 20 27 27 H 1.48501 * 109.47353 * 54.41784 * 24 22 20 28 28 H 1.08998 * 109.47071 * 269.96774 * 1 2 3 29 29 H 1.09007 * 109.46835 * 29.96049 * 1 2 3 30 30 H 1.08996 * 109.46826 * 149.96024 * 1 2 3 31 31 H 1.07997 * 124.80729 * 179.97438 * 4 3 2 32 32 H 0.97004 * 119.99981 * 359.97438 * 9 7 6 33 33 H 1.09005 * 109.47153 * 59.99522 * 10 9 7 34 34 H 1.09009 * 109.47112 * 300.00126 * 10 9 7 35 35 H 1.08991 * 109.56525 * 65.66824 * 13 11 10 36 36 H 1.09006 * 109.35342 * 305.61380 * 13 11 10 37 37 H 1.09001 * 109.46150 * 301.21391 * 14 13 11 38 38 H 1.09006 * 109.45892 * 181.25708 * 14 13 11 39 39 H 1.09005 * 109.47493 * 179.83121 * 16 15 14 40 40 H 1.08993 * 109.47357 * 299.84117 * 16 15 14 41 41 H 1.09006 * 109.46830 * 59.84045 * 16 15 14 42 42 H 1.09007 * 109.47229 * 295.52042 * 17 15 14 43 43 H 1.09005 * 109.47053 * 55.51843 * 17 15 14 44 44 H 1.08994 * 109.47385 * 175.52070 * 17 15 14 45 45 H 1.08998 * 109.58893 * 294.84638 * 18 15 14 46 46 H 1.09006 * 109.70421 * 174.49169 * 18 15 14 47 47 H 0.97001 * 119.99898 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0994 0.0000 4 6 3.5066 0.9745 -0.0005 5 16 3.9447 -0.6780 0.0067 6 6 2.2440 -1.1390 -0.0005 7 6 1.7191 -2.5087 -0.0004 8 8 0.5174 -2.6997 0.0006 9 7 2.5680 -3.5556 -0.0004 10 6 2.0438 -4.9236 0.0002 11 6 3.2083 -5.9159 -0.0006 12 1 3.8200 -5.7639 -0.8900 13 6 2.6627 -7.3428 0.0030 14 6 3.8234 -8.3300 0.1457 15 6 4.5448 -8.0835 1.4727 16 6 5.6844 -9.0923 1.6295 17 6 3.5568 -8.2454 2.6297 18 6 5.1153 -6.6618 1.4827 19 7 4.0283 -5.7141 1.2016 20 6 3.7806 -4.6658 2.0473 21 1 2.7633 -4.3974 2.2909 22 6 4.8371 -3.9483 2.5912 23 7 4.6322 -3.1536 3.6202 24 14 6.5495 -4.1105 1.8627 25 1 7.4640 -3.1487 2.5289 26 1 7.0476 -5.4937 2.0723 27 1 6.4983 -3.8180 0.4077 28 1 -0.3633 -0.0006 1.0276 29 1 -0.3633 0.8904 -0.5133 30 1 -0.3633 -0.8896 -0.5144 31 1 4.2058 1.7976 -0.0010 32 1 3.5260 -3.4033 -0.0009 33 1 1.4335 -5.0793 -0.8894 34 1 1.4343 -5.0787 0.8906 35 1 2.1351 -7.5342 -0.9313 36 1 1.9761 -7.4649 0.8408 37 1 4.5223 -8.1905 -0.6790 38 1 3.4376 -9.3493 0.1260 39 1 6.1998 -8.9144 2.5733 40 1 5.2780 -10.1036 1.6223 41 1 6.3874 -8.9773 0.8044 42 1 2.7892 -7.4744 2.5626 43 1 3.0899 -9.2288 2.5738 44 1 4.0874 -8.1484 3.5768 45 1 5.8857 -6.5718 0.7168 46 1 5.5453 -6.4452 2.4606 47 1 3.7431 -3.0696 3.9986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089610028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:03 Heat of formation + Delta-G solvation = 20.378303 kcal Electronic energy + Delta-G solvation = -28758.608582 eV Core-core repulsion = 25068.479910 eV Total energy + Delta-G solvation = -3690.128672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.01152 -39.22392 -38.30391 -35.24597 -33.27417 -32.37701 -31.58982 -30.74344 -28.72903 -27.05173 -26.81087 -25.31802 -24.81449 -23.62362 -22.43173 -20.99589 -20.07467 -18.90029 -18.52724 -18.08204 -17.12141 -16.32206 -15.53103 -15.49775 -14.97220 -14.73057 -14.47431 -14.26679 -13.81797 -13.57515 -13.47595 -13.43080 -13.32388 -13.00349 -12.72851 -12.30579 -12.25634 -12.16449 -12.10456 -11.71539 -11.59568 -11.43176 -11.06718 -10.99623 -10.93778 -10.59035 -10.50032 -10.27375 -9.96503 -9.88005 -9.75220 -9.45576 -9.35530 -9.26450 -9.08884 -8.65988 -8.57519 -8.27721 -6.99982 -6.28126 -3.55319 0.53488 1.48812 1.87796 2.72416 3.32446 3.38708 3.55910 3.58446 3.77097 4.35582 4.48188 4.82042 5.13091 5.20809 5.22385 5.24350 5.30167 5.38350 5.43270 5.54626 5.69286 5.81476 5.89785 5.91626 5.97983 5.99535 6.02182 6.05182 6.11275 6.16327 6.25373 6.27617 6.29758 6.33869 6.45732 6.53656 6.55113 6.63506 6.71380 6.81115 6.89096 7.03168 7.06667 7.78574 8.09856 8.10537 8.39291 8.69514 8.97266 9.47412 10.14499 11.01968 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.004547 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.421119 B = 6156.807660 C = 7254.807873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.127 3.873 3 N -0.479 5.479 4 C 0.014 3.986 5 S 0.194 5.806 6 C -0.279 4.279 7 C 0.590 3.410 8 O -0.547 6.547 9 N -0.682 5.682 10 C 0.141 3.859 11 C 0.157 3.843 12 H 0.034 0.966 13 C -0.130 4.130 14 C -0.096 4.096 15 C -0.087 4.087 16 C -0.138 4.138 17 C -0.126 4.126 18 C 0.146 3.854 19 N -0.599 5.599 20 C -0.344 4.344 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.908 5.908 24 Si 1.038 2.962 25 H -0.296 1.296 26 H -0.280 1.280 27 H -0.287 1.287 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.201 0.799 32 H 0.409 0.591 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.020 0.980 46 H 0.072 0.928 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -2.042 -8.741 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 N -0.193 5.193 4 C -0.281 4.281 5 S 0.449 5.551 6 C -0.404 4.404 7 C 0.375 3.625 8 O -0.429 6.429 9 N -0.331 5.331 10 C 0.017 3.983 11 C 0.051 3.949 12 H 0.051 0.949 13 C -0.170 4.170 14 C -0.134 4.134 15 C -0.089 4.089 16 C -0.196 4.196 17 C -0.183 4.183 18 C 0.021 3.979 19 N -0.324 5.324 20 C -0.473 4.473 21 H 0.082 0.918 22 C -0.201 4.201 23 N -0.546 5.546 24 Si 0.868 3.132 25 H -0.223 1.223 26 H -0.207 1.207 27 H -0.214 1.214 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.218 0.782 32 H 0.246 0.754 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.090 0.910 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.732 -1.609 -8.564 8.884 hybrid contribution -1.678 -0.436 0.108 1.737 sum 0.054 -2.045 -8.456 8.700 Atomic orbital electron populations 1.20581 0.86314 1.03921 1.03453 1.20630 0.98544 0.85080 0.96852 1.66090 1.04948 1.31438 1.16837 1.28608 0.95379 1.01042 1.03028 1.84365 1.05381 1.01956 1.63377 1.25601 0.96272 0.99478 1.19027 1.16627 0.86113 0.82543 0.77230 1.90708 1.14439 1.85166 1.52573 1.45827 1.10274 1.05319 1.71728 1.21252 0.95959 0.80236 1.00888 1.20737 0.91435 0.91996 0.90740 0.94854 1.21907 0.98042 0.95992 1.01021 1.21416 0.97118 0.97863 0.96958 1.21075 0.95473 0.97168 0.95136 1.21820 0.98182 0.98303 1.01297 1.21708 0.99429 1.00145 0.97041 1.21572 0.90103 0.87009 0.99232 1.44382 1.36304 1.28779 1.22962 1.20098 0.94431 1.08242 1.24516 0.91836 1.26284 1.03006 0.94044 0.96815 1.70891 1.24439 1.38904 1.20331 0.84224 0.76996 0.76054 0.75878 1.22347 1.20730 1.21410 0.90506 0.91316 0.88301 0.78191 0.75382 0.92392 0.91354 0.92757 0.91446 0.92782 0.93119 0.92914 0.93405 0.93233 0.91249 0.94592 0.93578 0.96204 0.91007 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.69 36.01 0.35 -0.95 16 2 C 0.13 2.23 6.79 -83.89 -0.57 1.66 16 3 N -0.48 -7.89 10.50 -11.53 -0.12 -8.01 16 4 C 0.01 0.20 12.22 51.75 0.63 0.83 16 5 S 0.19 3.14 22.35 -107.50 -2.40 0.73 16 6 C -0.28 -5.17 6.48 -37.10 -0.24 -5.41 16 7 C 0.59 11.84 7.78 -12.85 -0.10 11.74 16 8 O -0.55 -11.72 14.27 5.21 0.07 -11.65 16 9 N -0.68 -13.32 4.02 -61.62 -0.25 -13.56 16 10 C 0.14 2.57 4.45 -4.05 -0.02 2.56 16 11 C 0.16 2.78 2.99 -67.83 -0.20 2.58 16 12 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 13 C -0.13 -1.97 5.01 -26.83 -0.13 -2.10 16 14 C -0.10 -1.38 4.71 -26.69 -0.13 -1.51 16 15 C -0.09 -1.39 0.77 -154.39 -0.12 -1.51 16 16 C -0.14 -1.91 8.48 37.15 0.32 -1.60 16 17 C -0.13 -2.09 7.90 37.16 0.29 -1.79 16 18 C 0.15 2.83 2.69 -3.71 -0.01 2.82 16 19 N -0.60 -12.26 1.90 -165.02 -0.31 -12.58 16 20 C -0.34 -8.26 6.80 -15.06 -0.10 -8.36 16 21 H 0.06 1.74 6.62 -52.48 -0.35 1.39 16 22 C 0.00 0.07 5.25 -17.43 -0.09 -0.02 16 23 N -0.91 -25.57 13.71 55.49 0.76 -24.81 16 24 Si 1.04 23.46 25.83 -169.99 -4.39 19.07 16 25 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -5.94 5.47 56.52 0.31 -5.64 16 27 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.10 1.62 6.01 -51.93 -0.31 1.31 16 31 H 0.20 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.41 8.22 6.59 -40.82 -0.27 7.95 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.40 7.40 -51.92 -0.38 1.02 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.09 6.44 -51.93 -0.33 0.75 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.31 6.11 -51.92 -0.32 0.99 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.02 0.39 7.06 -51.93 -0.37 0.02 16 46 H 0.07 1.56 5.68 -51.93 -0.30 1.26 16 47 H 0.26 7.66 8.73 -40.82 -0.36 7.30 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -28.20 370.68 -8.55 -36.74 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.37 Total: 9.54 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.12 Total: -1.07 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.08 Total: -58.96 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.39 Total: 19.07 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.40 Total: 0.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.20 -8.55 -36.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089610028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.122 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds