Wall clock time and date at job start Tue Mar 31 2020 21:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28654 * 124.71690 * 2 1 4 4 C 1.33567 * 115.76470 * 180.18853 * 3 2 1 5 5 C 1.47264 * 123.14354 * 179.83052 * 4 3 2 6 6 O 1.21628 * 120.00530 * 179.70719 * 5 4 3 7 7 N 1.34783 * 119.99569 * 359.70671 * 5 4 3 8 8 C 1.46498 * 119.99707 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47039 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.70430 * 60.32421 * 9 8 7 11 11 C 1.53200 * 109.58725 * 180.68023 * 9 8 7 12 12 C 1.53034 * 109.31147 * 174.42204 * 11 9 8 13 13 C 1.53043 * 109.54216 * 298.63287 * 12 11 9 14 14 C 1.52991 * 109.49987 * 181.31736 * 13 12 11 15 15 C 1.52998 * 109.49458 * 301.38715 * 13 12 11 16 16 C 1.52767 * 109.37946 * 61.24230 * 13 12 11 17 17 N 1.46924 * 109.58907 * 299.96890 * 9 8 7 18 18 C 1.36935 * 120.62989 * 6.57779 * 17 9 8 19 19 H 1.08006 * 120.00369 * 327.43062 * 18 17 9 20 20 C 1.38813 * 120.00336 * 147.42307 * 18 17 9 21 21 N 1.31623 * 119.99631 * 337.82559 * 20 18 17 22 22 Si 1.86792 * 120.00386 * 157.54866 * 20 18 17 23 23 H 1.48502 * 109.47138 * 180.27848 * 22 20 18 24 24 H 1.48504 * 109.46952 * 300.27511 * 22 20 18 25 25 H 1.48500 * 109.47206 * 60.27554 * 22 20 18 26 26 C 1.35208 * 113.71453 * 359.56513 * 4 3 2 27 27 S 1.70767 * 124.72205 * 179.73455 * 2 1 3 28 28 H 1.09002 * 109.47287 * 180.24296 * 1 2 3 29 29 H 1.09006 * 109.47105 * 300.24212 * 1 2 3 30 30 H 1.09000 * 109.47430 * 60.24187 * 1 2 3 31 31 H 0.96995 * 120.00156 * 0.02562 * 7 5 4 32 32 H 1.09009 * 109.46966 * 60.00085 * 8 7 5 33 33 H 1.09003 * 109.47646 * 300.00496 * 8 7 5 34 34 H 1.08997 * 109.49142 * 294.37548 * 11 9 8 35 35 H 1.08997 * 109.49402 * 54.43603 * 11 9 8 36 36 H 1.09002 * 109.46240 * 58.65419 * 12 11 9 37 37 H 1.09003 * 109.46180 * 178.62487 * 12 11 9 38 38 H 1.09003 * 109.47230 * 60.00214 * 14 13 12 39 39 H 1.09005 * 109.47522 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47391 * 300.00001 * 14 13 12 41 41 H 1.08991 * 109.47493 * 59.99620 * 15 13 12 42 42 H 1.09003 * 109.47118 * 179.97438 * 15 13 12 43 43 H 1.08996 * 109.47116 * 299.99291 * 15 13 12 44 44 H 1.09001 * 109.50760 * 185.71067 * 16 13 12 45 45 H 1.08996 * 109.43190 * 65.42750 * 16 13 12 46 46 H 0.97004 * 119.99766 * 354.12335 * 21 20 18 47 47 H 1.08001 * 125.58492 * 180.27147 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0575 0.0000 4 6 3.5591 0.8497 -0.0040 5 6 4.5463 1.9424 -0.0082 6 8 5.7356 1.6877 -0.0063 7 7 4.1318 3.2249 -0.0142 8 6 5.1138 4.3120 -0.0179 9 6 4.3853 5.6574 -0.0239 10 1 3.7629 5.7422 0.8669 11 6 5.4099 6.7961 -0.0449 12 6 4.6784 8.1324 -0.1911 13 6 3.9074 8.1520 -1.5130 14 6 3.2032 9.5006 -1.6736 15 6 4.8806 7.9424 -2.6748 16 6 2.8703 7.0303 -1.5116 17 7 3.5436 5.7564 -1.2240 18 6 3.3940 4.6836 -2.0618 19 1 4.2074 3.9859 -2.1964 20 6 2.1969 4.4925 -2.7380 21 7 1.0891 5.0374 -2.2815 22 14 2.1594 3.4687 -4.2999 23 1 0.7726 3.4236 -4.8290 24 1 3.0564 4.0794 -5.3137 25 1 2.6195 2.0893 -3.9987 26 6 3.9036 -0.4578 0.0021 27 16 2.4796 -1.4036 0.0065 28 1 -0.3634 -1.0277 0.0044 29 1 -0.3634 0.5176 0.8879 30 1 -0.3634 0.5101 -0.8921 31 1 3.1834 3.4281 -0.0154 32 1 5.7397 4.2333 -0.9070 33 1 5.7379 4.2411 0.8730 34 1 5.9774 6.7919 0.8857 35 1 6.0893 6.6587 -0.8860 36 1 3.9815 8.2575 0.6376 37 1 5.4035 8.9462 -0.1818 38 1 3.9444 10.2998 -1.6737 39 1 2.6539 9.5140 -2.6150 40 1 2.5092 9.6489 -0.8463 41 1 5.3812 6.9810 -2.5607 42 1 4.3311 7.9560 -3.6161 43 1 5.6228 8.7407 -2.6756 44 1 2.3901 6.9773 -2.4887 45 1 2.1219 7.2294 -0.7447 46 1 1.0917 5.5002 -1.4290 47 1 4.9131 -0.8417 0.0045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089683089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:57 Heat of formation + Delta-G solvation = 15.614920 kcal Electronic energy + Delta-G solvation = -28636.719224 eV Core-core repulsion = 24946.383996 eV Total energy + Delta-G solvation = -3690.335228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.12148 -38.99166 -37.99819 -35.14256 -33.38971 -32.29518 -32.01664 -29.77478 -28.18403 -27.76526 -26.69705 -25.42157 -24.96447 -22.95232 -22.13116 -20.92729 -20.19049 -19.42077 -18.30157 -17.90355 -17.02574 -16.12135 -15.54224 -15.27059 -14.96697 -14.54795 -14.36577 -14.02205 -13.79662 -13.63324 -13.46390 -13.39411 -13.24430 -12.92952 -12.56337 -12.31125 -12.14412 -12.07701 -11.87778 -11.78994 -11.47047 -11.38439 -11.24844 -10.76473 -10.74918 -10.65801 -10.27595 -10.08760 -9.95077 -9.86810 -9.68836 -9.59747 -9.50266 -9.46442 -9.06626 -8.74731 -8.42528 -8.13420 -6.80917 -5.98821 -3.25099 0.71281 1.36953 1.73611 2.33479 3.49343 3.51050 3.67741 3.77625 3.93448 4.26500 4.57459 5.05117 5.09453 5.28546 5.35070 5.37502 5.41403 5.43396 5.52988 5.56363 5.58869 5.68523 5.80783 5.94268 5.94929 6.04188 6.09638 6.15321 6.17230 6.25350 6.30690 6.38212 6.40579 6.41149 6.46043 6.57596 6.76858 6.85556 6.90277 6.96773 7.15603 7.19712 7.25022 7.68326 8.10543 8.32807 8.62795 8.85346 9.11977 9.85460 10.31119 11.24909 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004199 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.009925 B = 6666.809504 C = 7633.411404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.428 5.428 4 C 0.028 3.972 5 C 0.582 3.418 6 O -0.563 6.563 7 N -0.667 5.667 8 C 0.136 3.864 9 C 0.162 3.838 10 H 0.029 0.971 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.089 4.089 14 C -0.135 4.135 15 C -0.125 4.125 16 C 0.169 3.831 17 N -0.590 5.590 18 C -0.344 4.344 19 H 0.057 0.943 20 C -0.009 4.009 21 N -0.910 5.910 22 Si 1.052 2.948 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.295 1.295 26 C -0.235 4.235 27 S 0.175 5.825 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.423 0.577 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.032 0.968 44 H 0.075 0.925 45 H 0.014 0.986 46 H 0.269 0.731 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -5.250 5.723 7.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.249 4.249 3 N -0.143 5.143 4 C -0.107 4.107 5 C 0.364 3.636 6 O -0.444 6.444 7 N -0.317 5.317 8 C 0.012 3.988 9 C 0.055 3.945 10 H 0.046 0.954 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.090 4.090 14 C -0.193 4.193 15 C -0.182 4.182 16 C 0.043 3.957 17 N -0.315 5.315 18 C -0.473 4.473 19 H 0.074 0.926 20 C -0.212 4.212 21 N -0.549 5.549 22 Si 0.883 3.117 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.223 1.223 26 C -0.377 4.377 27 S 0.431 5.569 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.032 0.968 46 H 0.080 0.920 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.237 -6.454 4.475 7.857 hybrid contribution 1.336 1.382 1.066 2.198 sum 1.573 -5.072 5.541 7.675 Atomic orbital electron populations 1.20430 0.84884 1.03101 1.05106 1.27165 1.02267 0.90973 1.04447 1.66961 1.03012 1.30731 1.13639 1.20579 0.90053 0.93547 1.06472 1.17052 0.86417 0.82417 0.77668 1.90736 1.16057 1.84232 1.53326 1.45844 1.12404 1.03806 1.69619 1.21297 0.91045 0.85801 1.00663 1.20718 0.91718 0.91241 0.90843 0.95350 1.21999 0.98454 0.95755 1.00740 1.21405 0.98289 0.96389 0.97214 1.21043 0.97325 0.95903 0.94772 1.21785 0.99706 0.96552 1.01275 1.21707 0.98108 1.01097 0.97311 1.20872 0.91487 0.83450 0.99901 1.44068 1.55982 1.08452 1.22951 1.19841 0.98690 1.05256 1.23489 0.92559 1.25603 0.91232 1.00578 1.03829 1.70763 1.26645 1.36277 1.21261 0.83700 0.75533 0.75774 0.76710 1.21165 1.22176 1.22273 1.26459 1.05417 0.96791 1.09050 1.82596 0.95458 1.12635 1.66248 0.90490 0.89353 0.88862 0.73714 0.91429 0.92668 0.93040 0.91519 0.92952 0.93403 0.93689 0.92954 0.93320 0.91453 0.93544 0.94854 0.90689 0.96764 0.91951 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.47 36.00 0.38 -0.46 16 2 C 0.03 0.47 7.34 -13.61 -0.10 0.37 16 3 N -0.43 -8.03 10.12 -8.51 -0.09 -8.11 16 4 C 0.03 0.54 6.70 -84.52 -0.57 -0.02 16 5 C 0.58 12.36 7.80 -12.59 -0.10 12.26 16 6 O -0.56 -12.77 16.71 5.25 0.09 -12.68 16 7 N -0.67 -14.15 3.86 -61.43 -0.24 -14.38 16 8 C 0.14 2.70 4.43 -4.04 -0.02 2.69 16 9 C 0.16 3.16 3.02 -67.60 -0.20 2.96 16 10 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 11 C -0.13 -2.18 5.03 -26.61 -0.13 -2.31 16 12 C -0.10 -1.54 4.71 -26.69 -0.13 -1.67 16 13 C -0.09 -1.57 0.77 -154.61 -0.12 -1.69 16 14 C -0.14 -2.10 8.48 37.15 0.32 -1.79 16 15 C -0.13 -2.24 7.98 37.16 0.30 -1.94 16 16 C 0.17 3.66 3.35 -3.93 -0.01 3.64 16 17 N -0.59 -13.25 2.22 -165.03 -0.37 -13.62 16 18 C -0.34 -8.70 6.79 -15.06 -0.10 -8.81 16 19 H 0.06 1.52 6.00 -52.48 -0.31 1.21 16 20 C -0.01 -0.23 4.73 -17.43 -0.08 -0.31 16 21 N -0.91 -25.47 12.57 55.49 0.70 -24.78 16 22 Si 1.05 25.39 29.97 -169.99 -5.10 20.29 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 26 C -0.24 -3.66 10.62 29.65 0.31 -3.34 16 27 S 0.17 2.10 22.90 -107.50 -2.46 -0.36 16 28 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.42 9.64 6.90 -40.82 -0.28 9.36 16 32 H 0.07 1.46 7.43 -51.92 -0.39 1.07 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.17 6.34 -51.93 -0.33 0.84 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.33 5.98 -51.93 -0.31 1.02 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 1.86 6.60 -51.93 -0.34 1.52 16 45 H 0.01 0.33 7.82 -51.93 -0.41 -0.08 16 46 H 0.27 7.59 6.70 -40.82 -0.27 7.32 16 47 H 0.19 2.60 8.03 -52.49 -0.42 2.18 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -29.81 379.50 -9.36 -39.17 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.36 Total: 9.18 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.26 Total: -0.43 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.01 Total: -60.89 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.46 Total: -0.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.81 -9.36 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089683089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.783 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds