Wall clock time and date at job start Tue Mar 31 2020 21:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28654 * 124.71690 * 2 1 4 4 C 1.33567 * 115.76470 * 180.18853 * 3 2 1 5 5 C 1.47264 * 123.14354 * 179.83052 * 4 3 2 6 6 O 1.21628 * 120.00530 * 179.70719 * 5 4 3 7 7 N 1.34783 * 119.99569 * 359.70671 * 5 4 3 8 8 C 1.46498 * 119.99707 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47039 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.70430 * 60.32421 * 9 8 7 11 11 C 1.53200 * 109.58725 * 180.68023 * 9 8 7 12 12 C 1.53034 * 109.31147 * 174.42204 * 11 9 8 13 13 C 1.53043 * 109.54216 * 298.63287 * 12 11 9 14 14 C 1.52991 * 109.49987 * 181.31736 * 13 12 11 15 15 C 1.52998 * 109.49458 * 301.38715 * 13 12 11 16 16 C 1.52767 * 109.37946 * 61.24230 * 13 12 11 17 17 N 1.46924 * 109.58907 * 299.96890 * 9 8 7 18 18 C 1.36935 * 120.62989 * 6.57779 * 17 9 8 19 19 H 1.08006 * 120.00369 * 327.43062 * 18 17 9 20 20 C 1.38813 * 120.00336 * 147.42307 * 18 17 9 21 21 N 1.31623 * 119.99631 * 337.82559 * 20 18 17 22 22 Si 1.86792 * 120.00386 * 157.54866 * 20 18 17 23 23 H 1.48502 * 109.47138 * 180.27848 * 22 20 18 24 24 H 1.48504 * 109.46952 * 300.27511 * 22 20 18 25 25 H 1.48500 * 109.47206 * 60.27554 * 22 20 18 26 26 C 1.35208 * 113.71453 * 359.56513 * 4 3 2 27 27 S 1.70767 * 124.72205 * 179.73455 * 2 1 3 28 28 H 1.09002 * 109.47287 * 180.24296 * 1 2 3 29 29 H 1.09006 * 109.47105 * 300.24212 * 1 2 3 30 30 H 1.09000 * 109.47430 * 60.24187 * 1 2 3 31 31 H 0.96995 * 120.00156 * 0.02562 * 7 5 4 32 32 H 1.09009 * 109.46966 * 60.00085 * 8 7 5 33 33 H 1.09003 * 109.47646 * 300.00496 * 8 7 5 34 34 H 1.08997 * 109.49142 * 294.37548 * 11 9 8 35 35 H 1.08997 * 109.49402 * 54.43603 * 11 9 8 36 36 H 1.09002 * 109.46240 * 58.65419 * 12 11 9 37 37 H 1.09003 * 109.46180 * 178.62487 * 12 11 9 38 38 H 1.09003 * 109.47230 * 60.00214 * 14 13 12 39 39 H 1.09005 * 109.47522 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47391 * 300.00001 * 14 13 12 41 41 H 1.08991 * 109.47493 * 59.99620 * 15 13 12 42 42 H 1.09003 * 109.47118 * 179.97438 * 15 13 12 43 43 H 1.08996 * 109.47116 * 299.99291 * 15 13 12 44 44 H 1.09001 * 109.50760 * 185.71067 * 16 13 12 45 45 H 1.08996 * 109.43190 * 65.42750 * 16 13 12 46 46 H 0.97004 * 119.99766 * 354.12335 * 21 20 18 47 47 H 1.08001 * 125.58492 * 180.27147 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0575 0.0000 4 6 3.5591 0.8497 -0.0040 5 6 4.5463 1.9424 -0.0082 6 8 5.7356 1.6877 -0.0063 7 7 4.1318 3.2249 -0.0142 8 6 5.1138 4.3120 -0.0179 9 6 4.3853 5.6574 -0.0239 10 1 3.7629 5.7422 0.8669 11 6 5.4099 6.7961 -0.0449 12 6 4.6784 8.1324 -0.1911 13 6 3.9074 8.1520 -1.5130 14 6 3.2032 9.5006 -1.6736 15 6 4.8806 7.9424 -2.6748 16 6 2.8703 7.0303 -1.5116 17 7 3.5436 5.7564 -1.2240 18 6 3.3940 4.6836 -2.0618 19 1 4.2074 3.9859 -2.1964 20 6 2.1969 4.4925 -2.7380 21 7 1.0891 5.0374 -2.2815 22 14 2.1594 3.4687 -4.2999 23 1 0.7726 3.4236 -4.8290 24 1 3.0564 4.0794 -5.3137 25 1 2.6195 2.0893 -3.9987 26 6 3.9036 -0.4578 0.0021 27 16 2.4796 -1.4036 0.0065 28 1 -0.3634 -1.0277 0.0044 29 1 -0.3634 0.5176 0.8879 30 1 -0.3634 0.5101 -0.8921 31 1 3.1834 3.4281 -0.0154 32 1 5.7397 4.2333 -0.9070 33 1 5.7379 4.2411 0.8730 34 1 5.9774 6.7919 0.8857 35 1 6.0893 6.6587 -0.8860 36 1 3.9815 8.2575 0.6376 37 1 5.4035 8.9462 -0.1818 38 1 3.9444 10.2998 -1.6737 39 1 2.6539 9.5140 -2.6150 40 1 2.5092 9.6489 -0.8463 41 1 5.3812 6.9810 -2.5607 42 1 4.3311 7.9560 -3.6161 43 1 5.6228 8.7407 -2.6756 44 1 2.3901 6.9773 -2.4887 45 1 2.1219 7.2294 -0.7447 46 1 1.0917 5.5002 -1.4290 47 1 4.9131 -0.8417 0.0045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089683089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:56 Heat of formation + Delta-G solvation = -2.263278 kcal Electronic energy + Delta-G solvation = -28637.494481 eV Core-core repulsion = 24946.383996 eV Total energy + Delta-G solvation = -3691.110485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53191 -40.51791 -39.51584 -36.75416 -35.24715 -33.78985 -33.21134 -31.56392 -29.33478 -29.24509 -28.11144 -27.26039 -26.35968 -24.47743 -23.74195 -22.26851 -21.87048 -20.77092 -19.74336 -19.48668 -18.73346 -17.57192 -17.18510 -16.81859 -16.34554 -16.03063 -15.83881 -15.60186 -15.43336 -15.25442 -14.94001 -14.84143 -14.54328 -14.32520 -14.04289 -13.66607 -13.49699 -13.45836 -13.09516 -13.06217 -12.98643 -12.81606 -12.71735 -12.57576 -12.35902 -12.27034 -12.02495 -11.80248 -11.65013 -11.37719 -11.26366 -11.06441 -10.84330 -10.73777 -10.62394 -10.41727 -10.06370 -9.70578 -8.74853 -8.04097 -5.29232 -0.49436 0.28911 0.56821 0.96345 1.49336 1.53490 1.71219 2.26683 2.43225 2.62021 3.06094 3.31067 3.50486 3.85243 3.89415 3.92527 4.08134 4.12589 4.21140 4.26330 4.33599 4.40138 4.52031 4.56288 4.62588 4.67842 4.75748 4.81209 4.85240 4.88788 4.96371 4.99954 5.04406 5.06607 5.13997 5.16184 5.24131 5.27805 5.40821 5.45144 5.53668 5.58506 5.72897 6.03458 6.40578 6.54790 6.72985 7.16244 7.19108 7.87384 8.33854 9.14856 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004199 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.009925 B = 6666.809504 C = 7633.411404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.007 3.993 3 N -0.475 5.475 4 C -0.012 4.012 5 C 0.576 3.424 6 O -0.587 6.587 7 N -0.674 5.674 8 C 0.140 3.860 9 C 0.161 3.839 10 H 0.025 0.975 11 C -0.123 4.123 12 C -0.090 4.090 13 C -0.086 4.086 14 C -0.130 4.130 15 C -0.118 4.118 16 C 0.178 3.822 17 N -0.600 5.600 18 C -0.318 4.318 19 H 0.038 0.962 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 1.085 2.915 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.296 1.296 26 C -0.244 4.244 27 S 0.297 5.703 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.414 0.586 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.029 0.971 43 H 0.063 0.937 44 H 0.036 0.964 45 H -0.002 1.002 46 H 0.257 0.743 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -5.786 6.554 8.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.272 4.272 3 N -0.192 5.192 4 C -0.147 4.147 5 C 0.360 3.640 6 O -0.470 6.470 7 N -0.321 5.321 8 C 0.016 3.984 9 C 0.055 3.945 10 H 0.043 0.957 11 C -0.162 4.162 12 C -0.128 4.128 13 C -0.087 4.087 14 C -0.188 4.188 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.325 5.325 18 C -0.449 4.449 19 H 0.056 0.944 20 C -0.250 4.250 21 N -0.577 5.577 22 Si 0.914 3.086 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.224 1.224 26 C -0.387 4.387 27 S 0.554 5.446 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.252 0.748 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.016 0.984 46 H 0.067 0.933 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.878 -6.990 5.313 8.824 hybrid contribution 1.152 1.393 0.862 2.002 sum 2.030 -5.597 6.176 8.579 Atomic orbital electron populations 1.20599 0.82790 1.05552 1.04605 1.27789 1.03923 0.92002 1.03455 1.66939 1.03212 1.33354 1.15696 1.20347 0.90210 0.93904 1.10241 1.17496 0.86809 0.82922 0.76742 1.90689 1.17068 1.84644 1.54586 1.45899 1.11910 1.04442 1.69886 1.21309 0.90843 0.85848 1.00403 1.20861 0.91920 0.92445 0.89250 0.95715 1.21935 0.97544 0.94707 1.02030 1.21391 0.98672 0.96819 0.95907 1.20973 0.96381 0.95355 0.96016 1.21730 1.00238 0.95773 1.01017 1.21628 0.98387 1.00962 0.96554 1.20694 0.92236 0.84674 0.97114 1.44186 1.56285 1.08236 1.23807 1.19711 0.97309 1.05106 1.22737 0.94417 1.26310 0.91346 1.01634 1.05732 1.70840 1.27236 1.38396 1.21182 0.83216 0.75313 0.74920 0.75135 1.21428 1.21465 1.22361 1.26846 1.08031 0.96685 1.07103 1.82087 0.91192 1.08476 1.62834 0.86525 0.88933 0.90278 0.74804 0.93557 0.90853 0.90138 0.92093 0.92670 0.90325 0.90903 0.93867 0.92905 0.93744 0.95138 0.91790 0.94494 0.98397 0.93252 0.78722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.47 71.23 0.75 -0.84 16 2 C 0.01 0.21 7.34 88.57 0.65 0.86 16 3 N -0.48 -18.17 10.12 -180.83 -1.83 -20.00 16 4 C -0.01 -0.46 6.70 40.56 0.27 -0.19 16 5 C 0.58 25.38 7.80 86.62 0.68 26.06 16 6 O -0.59 -27.41 16.71 -4.12 -0.07 -27.47 16 7 N -0.67 -29.83 3.86 -466.51 -1.80 -31.63 16 8 C 0.14 5.70 4.43 86.38 0.38 6.08 16 9 C 0.16 6.36 3.02 44.98 0.14 6.49 16 10 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 11 C -0.12 -3.91 5.03 30.67 0.15 -3.75 16 12 C -0.09 -2.68 4.71 30.62 0.14 -2.54 16 13 C -0.09 -2.94 0.77 -52.25 -0.04 -2.98 16 14 C -0.13 -3.79 8.48 71.98 0.61 -3.18 16 15 C -0.12 -4.11 7.98 71.98 0.57 -3.54 16 16 C 0.18 7.95 3.35 86.22 0.29 8.24 16 17 N -0.60 -27.83 2.22 -676.04 -1.50 -29.33 16 18 C -0.32 -16.79 6.79 84.03 0.57 -16.22 16 19 H 0.04 2.14 6.00 -2.91 -0.02 2.12 16 20 C -0.05 -2.83 4.73 84.86 0.40 -2.43 16 21 N -0.93 -54.62 12.57 21.65 0.27 -54.35 16 22 Si 1.08 53.07 29.97 68.60 2.06 55.12 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 26 C -0.24 -7.34 10.62 67.12 0.71 -6.63 16 27 S 0.30 6.29 22.90 -56.49 -1.29 5.00 16 28 H 0.12 1.44 8.12 -2.39 -0.02 1.42 16 29 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.41 19.92 6.90 -92.71 -0.64 19.28 16 32 H 0.05 2.07 7.43 -2.38 -0.02 2.05 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.04 6.34 -2.39 -0.02 2.02 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 1.74 5.98 -2.39 -0.01 1.72 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.04 1.91 6.60 -2.39 -0.02 1.90 16 45 H 0.00 -0.09 7.82 -2.39 -0.02 -0.11 16 46 H 0.26 15.26 6.70 -92.71 -0.62 14.64 16 47 H 0.20 5.28 8.03 -2.91 -0.02 5.25 16 Total: -1.00 -69.06 379.50 2.60 -66.47 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.49 Total: 30.75 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 6.28 Total: 5.44 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -4.86 Total: -135.31 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.07 Total: -27.47 kcal Atomic # 14 Polarization: 53.07 SS G_CDS: 2.06 Total: 55.12 kcal Atomic # 16 Polarization: 6.29 SS G_CDS: -1.29 Total: 5.00 kcal Total: -69.06 2.60 -66.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089683089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.205 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds