Wall clock time and date at job start Tue Mar 31 2020 21:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28645 * 124.71629 * 2 1 4 4 C 1.33566 * 115.76655 * 179.97438 * 3 2 1 5 5 C 1.47261 * 123.14657 * 180.02562 * 4 3 2 6 6 O 1.21627 * 120.00656 * 179.97438 * 5 4 3 7 7 N 1.34784 * 119.99702 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99895 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47156 * 179.97438 * 8 7 5 10 10 H 1.08993 * 109.58939 * 299.94887 * 9 8 7 11 11 C 1.53196 * 109.58510 * 179.65885 * 9 8 7 12 12 C 1.53073 * 109.29113 * 185.72114 * 11 9 8 13 13 C 1.53040 * 109.65988 * 61.15655 * 12 11 9 14 14 C 1.52996 * 109.50170 * 178.74708 * 13 12 11 15 15 C 1.53003 * 109.49682 * 58.64963 * 13 12 11 16 16 C 1.53194 * 109.31522 * 298.69854 * 13 12 11 17 17 N 1.46924 * 109.58226 * 60.22972 * 9 8 7 18 18 C 1.36941 * 120.63284 * 353.37290 * 17 9 8 19 19 H 1.07993 * 120.00263 * 31.23698 * 18 17 9 20 20 C 1.38814 * 119.99909 * 211.23262 * 18 17 9 21 21 N 1.31627 * 119.99910 * 13.67062 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 193.66629 * 20 18 17 23 23 H 1.48495 * 109.46974 * 90.00229 * 22 20 18 24 24 H 1.48504 * 109.47020 * 210.00519 * 22 20 18 25 25 H 1.48503 * 109.46882 * 330.00430 * 22 20 18 26 26 C 1.35206 * 113.71552 * 0.02562 * 4 3 2 27 27 S 1.70766 * 124.72313 * 180.27897 * 2 1 3 28 28 H 1.09002 * 109.47038 * 89.99796 * 1 2 3 29 29 H 1.08994 * 109.47222 * 209.99883 * 1 2 3 30 30 H 1.09000 * 109.47209 * 330.00279 * 1 2 3 31 31 H 0.96994 * 119.99990 * 359.97438 * 7 5 4 32 32 H 1.08997 * 109.47324 * 300.00010 * 8 7 5 33 33 H 1.09001 * 109.47307 * 60.00315 * 8 7 5 34 34 H 1.08997 * 109.50065 * 305.53314 * 11 9 8 35 35 H 1.08997 * 109.49248 * 65.63487 * 11 9 8 36 36 H 1.09000 * 109.34979 * 301.13605 * 12 11 9 37 37 H 1.09002 * 109.45306 * 181.24640 * 12 11 9 38 38 H 1.09001 * 109.47599 * 179.83889 * 14 13 12 39 39 H 1.09001 * 109.47020 * 299.84280 * 14 13 12 40 40 H 1.09004 * 109.46971 * 59.83511 * 14 13 12 41 41 H 1.09002 * 109.46794 * 300.15780 * 15 13 12 42 42 H 1.08994 * 109.47130 * 60.16137 * 15 13 12 43 43 H 1.09002 * 109.46668 * 180.16580 * 15 13 12 44 44 H 1.09000 * 109.58562 * 294.85101 * 16 13 12 45 45 H 1.09000 * 109.70957 * 174.49107 * 16 13 12 46 46 H 0.96998 * 119.99662 * 179.97438 * 21 20 18 47 47 H 1.07996 * 125.58847 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0574 0.0000 4 6 3.5591 0.8497 0.0005 5 6 4.5463 1.9424 0.0012 6 8 5.7356 1.6876 0.0021 7 7 4.1318 3.2249 0.0007 8 6 5.1139 4.3120 0.0019 9 6 4.3854 5.6575 0.0004 10 1 3.7620 5.7345 -0.8903 11 6 5.4100 6.7963 0.0103 12 6 4.6787 8.1334 0.1528 13 6 3.9088 8.1608 1.4751 14 6 3.2046 9.5104 1.6283 15 6 4.8828 7.9574 2.6374 16 6 2.8671 7.0374 1.4784 17 7 3.5447 5.7635 1.2007 18 6 3.3950 4.6953 2.0444 19 1 4.2002 3.9860 2.1657 20 6 2.2082 4.5244 2.7438 21 7 1.1400 5.2154 2.4064 22 14 2.1271 3.3134 4.1639 23 1 2.4823 4.0078 5.4275 24 1 0.7507 2.7661 4.2697 25 1 3.0840 2.2035 3.9232 26 6 3.9037 -0.4578 0.0004 27 16 2.4797 -1.4035 -0.0068 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.1834 3.4281 -0.0004 32 1 5.7377 4.2372 0.8926 33 1 5.7398 4.2372 -0.8874 34 1 6.0916 6.6652 0.8507 35 1 5.9747 6.7855 -0.9219 36 1 3.9810 8.2536 -0.6760 37 1 5.4037 8.9471 0.1378 38 1 2.6541 9.5284 2.5689 39 1 3.9461 10.3094 1.6260 40 1 2.5121 9.6551 0.7991 41 1 5.3848 6.9962 2.5267 42 1 5.6236 8.7568 2.6348 43 1 4.3335 7.9740 3.5788 44 1 2.1203 7.2295 0.7080 45 1 2.3823 6.9885 2.4533 46 1 0.3106 5.0957 2.8949 47 1 4.9131 -0.8417 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089683090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:01 Heat of formation + Delta-G solvation = 18.801425 kcal Electronic energy + Delta-G solvation = -28595.262329 eV Core-core repulsion = 24905.065279 eV Total energy + Delta-G solvation = -3690.197051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.12866 -38.84815 -37.95104 -35.05818 -33.14223 -32.27057 -31.97592 -29.94342 -28.20377 -27.71272 -26.58085 -25.43563 -24.98411 -22.95391 -22.18869 -20.92420 -20.05547 -19.41451 -18.24879 -17.86483 -16.62588 -15.96238 -15.57274 -15.25201 -15.03337 -14.53773 -14.16980 -14.01857 -13.81062 -13.61982 -13.44027 -13.25925 -13.20372 -12.87752 -12.54629 -12.29053 -12.15280 -12.10694 -11.82140 -11.60704 -11.36729 -11.24873 -11.11109 -10.83357 -10.75730 -10.58971 -10.36354 -10.08112 -10.03686 -9.76501 -9.70576 -9.55729 -9.50193 -9.37929 -9.21976 -8.76101 -8.50392 -8.14071 -6.58042 -5.78239 -3.23491 0.69193 1.34894 1.72485 2.32010 3.36001 3.42676 3.46463 3.77961 3.93074 4.25773 4.48846 5.04378 5.23499 5.34302 5.35781 5.39888 5.48086 5.49168 5.52047 5.54024 5.65002 5.79199 5.89391 5.95001 6.06185 6.10335 6.16829 6.21220 6.26874 6.36547 6.40227 6.48428 6.50606 6.51311 6.55329 6.68568 6.94071 6.97440 7.05437 7.15767 7.19410 7.42212 7.66622 7.70840 7.85509 8.34170 8.46677 8.85973 9.22699 9.83688 10.41548 11.28819 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.004202 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.820214 B = 6662.053241 C = 7648.835930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.030 3.970 3 N -0.427 5.427 4 C 0.027 3.973 5 C 0.582 3.418 6 O -0.562 6.562 7 N -0.670 5.670 8 C 0.133 3.867 9 C 0.160 3.840 10 H 0.031 0.969 11 C -0.130 4.130 12 C -0.095 4.095 13 C -0.095 4.095 14 C -0.133 4.133 15 C -0.124 4.124 16 C 0.189 3.811 17 N -0.584 5.584 18 C -0.248 4.248 19 H 0.067 0.933 20 C 0.017 3.983 21 N -0.896 5.896 22 Si 0.889 3.111 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.234 4.234 27 S 0.174 5.826 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.425 0.575 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.044 0.956 44 H 0.016 0.984 45 H 0.085 0.915 46 H 0.252 0.748 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -5.538 -5.884 8.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.250 4.250 3 N -0.142 5.142 4 C -0.108 4.108 5 C 0.364 3.636 6 O -0.442 6.442 7 N -0.320 5.320 8 C 0.009 3.991 9 C 0.053 3.947 10 H 0.049 0.951 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.097 4.097 14 C -0.191 4.191 15 C -0.181 4.181 16 C 0.063 3.937 17 N -0.307 5.307 18 C -0.378 4.378 19 H 0.085 0.915 20 C -0.182 4.182 21 N -0.539 5.539 22 Si 0.720 3.280 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.375 4.375 27 S 0.430 5.570 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.265 0.735 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.616 -6.214 -5.822 8.538 hybrid contribution 0.127 0.245 0.953 0.992 sum 0.743 -5.969 -4.869 7.739 Atomic orbital electron populations 1.20453 0.84927 1.04539 1.03848 1.27149 1.02267 0.91003 1.04616 1.67000 1.03043 1.30695 1.13475 1.20601 0.90073 0.93600 1.06485 1.17042 0.86398 0.82431 0.77683 1.90739 1.16032 1.84232 1.53242 1.45900 1.12590 1.03817 1.69669 1.21360 0.91074 0.85912 1.00783 1.20724 0.91733 0.90944 0.91283 0.95140 1.22007 0.98425 0.95908 1.00587 1.21407 0.98218 0.96177 0.97472 1.21241 0.97596 0.96454 0.94366 1.21755 0.99583 0.96543 1.01219 1.21698 0.98076 1.00877 0.97471 1.20793 0.90054 0.81563 1.01300 1.44014 1.54967 1.09387 1.22345 1.19105 0.96839 1.03539 1.18306 0.91520 1.24968 0.95010 0.98199 1.00059 1.69996 1.00144 1.43417 1.40378 0.86482 0.76831 0.81419 0.83292 1.21589 1.21771 1.20670 1.26474 1.05418 0.96786 1.08867 1.82598 0.95507 1.12615 1.66326 0.89616 0.90282 0.88673 0.73501 0.91421 0.92549 0.91638 0.93111 0.92972 0.93682 0.93063 0.94009 0.93351 0.91594 0.95097 0.93671 0.96543 0.89642 0.93764 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.46 36.01 0.38 -0.47 16 2 C 0.03 0.44 7.34 -13.61 -0.10 0.34 16 3 N -0.43 -7.90 10.12 -8.51 -0.09 -7.98 16 4 C 0.03 0.51 6.70 -84.53 -0.57 -0.05 16 5 C 0.58 12.21 7.80 -12.59 -0.10 12.11 16 6 O -0.56 -12.61 16.71 5.25 0.09 -12.52 16 7 N -0.67 -14.02 3.84 -61.43 -0.24 -14.26 16 8 C 0.13 2.60 4.43 -4.04 -0.02 2.58 16 9 C 0.16 3.14 3.01 -67.60 -0.20 2.93 16 10 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 11 C -0.13 -2.18 5.04 -26.59 -0.13 -2.31 16 12 C -0.10 -1.56 4.70 -26.67 -0.13 -1.69 16 13 C -0.09 -1.71 0.77 -154.39 -0.12 -1.83 16 14 C -0.13 -2.13 8.48 37.16 0.32 -1.81 16 15 C -0.12 -2.24 7.99 37.16 0.30 -1.94 16 16 C 0.19 4.19 3.95 -3.71 -0.01 4.18 16 17 N -0.58 -13.23 2.41 -164.77 -0.40 -13.63 16 18 C -0.25 -6.26 6.96 -15.06 -0.10 -6.37 16 19 H 0.07 1.77 5.86 -52.49 -0.31 1.46 16 20 C 0.02 0.45 4.97 -17.43 -0.09 0.37 16 21 N -0.90 -24.44 11.22 55.49 0.62 -23.81 16 22 Si 0.89 21.86 29.58 -169.99 -5.03 16.83 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 26 C -0.23 -3.60 10.62 29.65 0.31 -3.28 16 27 S 0.17 2.07 22.92 -107.50 -2.46 -0.39 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.43 9.56 6.91 -40.82 -0.28 9.28 16 32 H 0.07 1.43 7.42 -51.93 -0.39 1.04 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.14 6.35 -51.93 -0.33 0.81 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 2.17 6.19 -51.93 -0.32 1.85 16 46 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.19 2.58 8.03 -52.49 -0.42 2.16 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -29.48 380.38 -9.45 -38.93 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.41 Total: 8.35 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.27 Total: 2.75 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.10 Total: -59.68 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.46 Total: -0.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.48 -9.45 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089683090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.731 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds