Wall clock time and date at job start Tue Mar 31 2020 21:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28645 * 124.71629 * 2 1 4 4 C 1.33566 * 115.76655 * 179.97438 * 3 2 1 5 5 C 1.47261 * 123.14657 * 180.02562 * 4 3 2 6 6 O 1.21627 * 120.00656 * 179.97438 * 5 4 3 7 7 N 1.34784 * 119.99702 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99895 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47156 * 179.97438 * 8 7 5 10 10 H 1.08993 * 109.58939 * 299.94887 * 9 8 7 11 11 C 1.53196 * 109.58510 * 179.65885 * 9 8 7 12 12 C 1.53073 * 109.29113 * 185.72114 * 11 9 8 13 13 C 1.53040 * 109.65988 * 61.15655 * 12 11 9 14 14 C 1.52996 * 109.50170 * 178.74708 * 13 12 11 15 15 C 1.53003 * 109.49682 * 58.64963 * 13 12 11 16 16 C 1.53194 * 109.31522 * 298.69854 * 13 12 11 17 17 N 1.46924 * 109.58226 * 60.22972 * 9 8 7 18 18 C 1.36941 * 120.63284 * 353.37290 * 17 9 8 19 19 H 1.07993 * 120.00263 * 31.23698 * 18 17 9 20 20 C 1.38814 * 119.99909 * 211.23262 * 18 17 9 21 21 N 1.31627 * 119.99910 * 13.67062 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 193.66629 * 20 18 17 23 23 H 1.48495 * 109.46974 * 90.00229 * 22 20 18 24 24 H 1.48504 * 109.47020 * 210.00519 * 22 20 18 25 25 H 1.48503 * 109.46882 * 330.00430 * 22 20 18 26 26 C 1.35206 * 113.71552 * 0.02562 * 4 3 2 27 27 S 1.70766 * 124.72313 * 180.27897 * 2 1 3 28 28 H 1.09002 * 109.47038 * 89.99796 * 1 2 3 29 29 H 1.08994 * 109.47222 * 209.99883 * 1 2 3 30 30 H 1.09000 * 109.47209 * 330.00279 * 1 2 3 31 31 H 0.96994 * 119.99990 * 359.97438 * 7 5 4 32 32 H 1.08997 * 109.47324 * 300.00010 * 8 7 5 33 33 H 1.09001 * 109.47307 * 60.00315 * 8 7 5 34 34 H 1.08997 * 109.50065 * 305.53314 * 11 9 8 35 35 H 1.08997 * 109.49248 * 65.63487 * 11 9 8 36 36 H 1.09000 * 109.34979 * 301.13605 * 12 11 9 37 37 H 1.09002 * 109.45306 * 181.24640 * 12 11 9 38 38 H 1.09001 * 109.47599 * 179.83889 * 14 13 12 39 39 H 1.09001 * 109.47020 * 299.84280 * 14 13 12 40 40 H 1.09004 * 109.46971 * 59.83511 * 14 13 12 41 41 H 1.09002 * 109.46794 * 300.15780 * 15 13 12 42 42 H 1.08994 * 109.47130 * 60.16137 * 15 13 12 43 43 H 1.09002 * 109.46668 * 180.16580 * 15 13 12 44 44 H 1.09000 * 109.58562 * 294.85101 * 16 13 12 45 45 H 1.09000 * 109.70957 * 174.49107 * 16 13 12 46 46 H 0.96998 * 119.99662 * 179.97438 * 21 20 18 47 47 H 1.07996 * 125.58847 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0574 0.0000 4 6 3.5591 0.8497 0.0005 5 6 4.5463 1.9424 0.0012 6 8 5.7356 1.6876 0.0021 7 7 4.1318 3.2249 0.0007 8 6 5.1139 4.3120 0.0019 9 6 4.3854 5.6575 0.0004 10 1 3.7620 5.7345 -0.8903 11 6 5.4100 6.7963 0.0103 12 6 4.6787 8.1334 0.1528 13 6 3.9088 8.1608 1.4751 14 6 3.2046 9.5104 1.6283 15 6 4.8828 7.9574 2.6374 16 6 2.8671 7.0374 1.4784 17 7 3.5447 5.7635 1.2007 18 6 3.3950 4.6953 2.0444 19 1 4.2002 3.9860 2.1657 20 6 2.2082 4.5244 2.7438 21 7 1.1400 5.2154 2.4064 22 14 2.1271 3.3134 4.1639 23 1 2.4823 4.0078 5.4275 24 1 0.7507 2.7661 4.2697 25 1 3.0840 2.2035 3.9232 26 6 3.9037 -0.4578 0.0004 27 16 2.4797 -1.4035 -0.0068 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.1834 3.4281 -0.0004 32 1 5.7377 4.2372 0.8926 33 1 5.7398 4.2372 -0.8874 34 1 6.0916 6.6652 0.8507 35 1 5.9747 6.7855 -0.9219 36 1 3.9810 8.2536 -0.6760 37 1 5.4037 8.9471 0.1378 38 1 2.6541 9.5284 2.5689 39 1 3.9461 10.3094 1.6260 40 1 2.5121 9.6551 0.7991 41 1 5.3848 6.9962 2.5267 42 1 5.6236 8.7568 2.6348 43 1 4.3335 7.9740 3.5788 44 1 2.1203 7.2295 0.7080 45 1 2.3823 6.9885 2.4533 46 1 0.3106 5.0957 2.8949 47 1 4.9131 -0.8417 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089683090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:00 Heat of formation + Delta-G solvation = 1.159360 kcal Electronic energy + Delta-G solvation = -28596.027347 eV Core-core repulsion = 24905.065279 eV Total energy + Delta-G solvation = -3690.962068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.51055 -40.37278 -39.46231 -36.66025 -34.99911 -33.72296 -33.20483 -31.74074 -29.32744 -29.19104 -28.00942 -27.31926 -26.34810 -24.50233 -23.75499 -22.24877 -21.71200 -20.73890 -19.63634 -19.46697 -18.24113 -17.52204 -17.24188 -16.77673 -16.45954 -15.98381 -15.82054 -15.57744 -15.28438 -15.16825 -14.87225 -14.71406 -14.52031 -14.32132 -13.98385 -13.78066 -13.42486 -13.12367 -13.09671 -13.03188 -12.96416 -12.85415 -12.75007 -12.53151 -12.50204 -12.24844 -12.12526 -11.88227 -11.65560 -11.26907 -11.22196 -10.94517 -10.87395 -10.75158 -10.63706 -10.48312 -10.03877 -9.68654 -8.49665 -7.80565 -5.25301 -0.49500 0.28189 0.57298 0.97369 1.34535 1.38053 1.43568 2.29223 2.44919 2.49582 3.06917 3.35280 3.59649 3.86622 3.98351 4.04441 4.12987 4.20893 4.27098 4.31820 4.42479 4.50704 4.52524 4.65205 4.68039 4.71575 4.86020 4.87760 4.92546 4.96567 5.05949 5.09958 5.14003 5.15750 5.16461 5.26353 5.40378 5.46841 5.53350 5.58309 5.63923 5.72588 5.82991 5.90219 6.42056 6.47841 6.74674 7.21230 7.24339 7.92067 8.44921 9.23700 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.004202 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.820214 B = 6662.053241 C = 7648.835930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.007 3.993 3 N -0.474 5.474 4 C -0.012 4.012 5 C 0.576 3.424 6 O -0.586 6.586 7 N -0.676 5.676 8 C 0.137 3.863 9 C 0.160 3.840 10 H 0.026 0.974 11 C -0.123 4.123 12 C -0.091 4.091 13 C -0.091 4.091 14 C -0.128 4.128 15 C -0.117 4.117 16 C 0.198 3.802 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.053 0.947 20 C -0.023 4.023 21 N -0.918 5.918 22 Si 0.930 3.070 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.243 4.243 27 S 0.292 5.708 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.416 0.584 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.028 0.972 44 H -0.008 1.008 45 H 0.049 0.951 46 H 0.246 0.754 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 -6.116 -6.858 9.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.272 4.272 3 N -0.190 5.190 4 C -0.147 4.147 5 C 0.361 3.639 6 O -0.469 6.469 7 N -0.324 5.324 8 C 0.013 3.987 9 C 0.054 3.946 10 H 0.043 0.957 11 C -0.162 4.162 12 C -0.128 4.128 13 C -0.093 4.093 14 C -0.186 4.186 15 C -0.174 4.174 16 C 0.073 3.927 17 N -0.317 5.317 18 C -0.358 4.358 19 H 0.071 0.929 20 C -0.220 4.220 21 N -0.565 5.565 22 Si 0.761 3.239 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.386 4.386 27 S 0.550 5.450 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.254 0.746 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.010 0.990 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.280 -6.795 -6.804 9.700 hybrid contribution -0.076 0.272 1.206 1.239 sum 1.204 -6.523 -5.597 8.680 Atomic orbital electron populations 1.20632 0.82791 1.04996 1.05390 1.27785 1.03936 0.91998 1.03519 1.66977 1.03215 1.33246 1.15601 1.20378 0.90249 0.93956 1.10153 1.17469 0.86771 0.82926 0.76778 1.90693 1.17033 1.84645 1.54503 1.45956 1.12116 1.04440 1.69918 1.21375 0.90863 0.85774 1.00712 1.20871 0.91902 0.92316 0.89531 0.95655 1.21946 0.97521 0.94688 1.02037 1.21390 0.98582 0.96794 0.96046 1.21143 0.96650 0.95749 0.95758 1.21702 1.00101 0.95890 1.00878 1.21616 0.98303 1.00911 0.96588 1.20572 0.90833 0.83052 0.98277 1.44154 1.55249 1.09074 1.23262 1.19021 0.95771 1.03288 1.17675 0.92938 1.25330 0.95196 0.99635 1.01814 1.70095 1.00227 1.44855 1.41291 0.85845 0.76226 0.79963 0.81827 1.21801 1.21804 1.21763 1.26853 1.07987 0.96699 1.07037 1.82107 0.91329 1.08534 1.63060 0.87474 0.87036 0.90966 0.74577 0.93260 0.90636 0.91976 0.90117 0.92879 0.90605 0.94003 0.91187 0.93104 0.93590 0.92038 0.95290 0.99011 0.93303 0.94442 0.78703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.46 71.24 0.74 -0.85 16 2 C 0.01 0.19 7.34 88.58 0.65 0.84 16 3 N -0.47 -17.83 10.12 -180.84 -1.83 -19.66 16 4 C -0.01 -0.47 6.70 40.55 0.27 -0.20 16 5 C 0.58 25.01 7.80 86.61 0.68 25.69 16 6 O -0.59 -26.97 16.71 -4.12 -0.07 -27.04 16 7 N -0.68 -29.43 3.84 -466.51 -1.79 -31.23 16 8 C 0.14 5.45 4.43 86.38 0.38 5.83 16 9 C 0.16 6.28 3.01 44.98 0.14 6.42 16 10 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 11 C -0.12 -3.88 5.04 30.68 0.15 -3.73 16 12 C -0.09 -2.73 4.70 30.63 0.14 -2.59 16 13 C -0.09 -3.20 0.77 -52.10 -0.04 -3.25 16 14 C -0.13 -3.86 8.48 71.98 0.61 -3.25 16 15 C -0.12 -4.09 7.99 71.98 0.58 -3.52 16 16 C 0.20 9.05 3.95 86.36 0.34 9.39 16 17 N -0.59 -27.67 2.41 -675.21 -1.63 -29.30 16 18 C -0.23 -11.88 6.96 84.03 0.59 -11.30 16 19 H 0.05 2.91 5.86 -2.91 -0.02 2.89 16 20 C -0.02 -1.26 4.97 84.86 0.42 -0.83 16 21 N -0.92 -52.32 11.22 21.65 0.24 -52.07 16 22 Si 0.93 46.49 29.58 68.60 2.03 48.52 16 23 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 26 C -0.24 -7.24 10.62 67.12 0.71 -6.53 16 27 S 0.29 6.14 22.92 -56.49 -1.29 4.85 16 28 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.42 19.69 6.91 -92.71 -0.64 19.05 16 32 H 0.05 2.14 7.42 -2.39 -0.02 2.12 16 33 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.06 2.04 6.35 -2.39 -0.02 2.03 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.78 5.98 -2.39 -0.01 1.77 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.05 2.59 6.19 -2.39 -0.01 2.57 16 46 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 47 H 0.20 5.23 8.03 -2.91 -0.02 5.21 16 Total: -1.00 -68.02 380.38 2.36 -65.66 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.34 Total: 28.14 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 6.37 Total: 12.13 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -5.01 Total: -132.26 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.07 Total: -27.04 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.29 Total: 4.85 kcal Total: -68.02 2.36 -65.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089683090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.823 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds