Wall clock time and date at job start Tue Mar 31 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.46685 * 2 1 4 4 N 1.30940 * 122.90281 * 270.01906 * 3 2 1 5 5 C 1.29438 * 117.36456 * 179.97438 * 4 3 2 6 6 S 1.70960 * 110.38747 * 0.02562 * 5 4 3 7 7 C 1.35664 * 122.90638 * 90.00117 * 3 2 1 8 8 C 1.46683 * 126.12679 * 0.05476 * 7 3 2 9 9 O 1.21680 * 120.00480 * 41.90583 * 8 7 3 10 10 N 1.34783 * 119.99791 * 221.90578 * 8 7 3 11 11 C 1.46926 * 120.62811 * 5.60511 * 10 8 7 12 12 C 1.53196 * 108.77111 * 126.37205 * 11 10 8 13 13 C 1.53040 * 109.31356 * 54.63385 * 12 11 10 14 14 H 1.08997 * 109.46083 * 58.65660 * 13 12 11 15 15 C 1.53003 * 109.45732 * 178.60999 * 13 12 11 16 16 N 1.46496 * 109.47662 * 295.00070 * 15 13 12 17 17 C 1.36936 * 120.00298 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99448 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99894 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99935 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99810 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47043 * 0.02562 * 21 19 17 23 23 H 1.48491 * 109.47196 * 120.00227 * 21 19 17 24 24 H 1.48500 * 109.47065 * 240.00457 * 21 19 17 25 25 C 1.53034 * 109.53734 * 298.63300 * 13 12 11 26 26 H 1.08999 * 109.49750 * 301.38162 * 25 13 12 27 27 C 1.53007 * 109.49691 * 181.31857 * 25 13 12 28 28 C 1.46927 * 120.63046 * 185.32672 * 10 8 7 29 29 H 1.08994 * 109.47443 * 299.99841 * 1 2 3 30 30 H 1.09001 * 109.47281 * 60.00481 * 1 2 3 31 31 H 1.09009 * 109.46976 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47443 * 240.00159 * 2 1 3 33 33 H 1.09001 * 109.47281 * 119.99519 * 2 1 3 34 34 H 1.07990 * 124.80498 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.58560 * 246.15518 * 11 10 8 36 36 H 1.08992 * 109.59055 * 6.58137 * 11 10 8 37 37 H 1.09006 * 109.49202 * 174.58428 * 12 11 10 38 38 H 1.08997 * 109.49667 * 294.64418 * 12 11 10 39 39 H 1.09005 * 109.46787 * 55.00114 * 15 13 12 40 40 H 1.08996 * 109.47087 * 174.99664 * 15 13 12 41 41 H 0.97010 * 119.99590 * 0.02562 * 16 15 13 42 42 H 0.96999 * 119.99564 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.46842 * 59.99891 * 27 25 13 44 44 H 1.08994 * 109.47084 * 180.02562 * 27 25 13 45 45 H 1.08996 * 109.46847 * 300.00219 * 27 25 13 46 46 H 1.08998 * 109.58711 * 353.41893 * 28 10 8 47 47 H 1.09000 * 109.58528 * 113.84163 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2689 2.0916 -1.0994 5 6 2.6978 3.3064 -0.9744 6 16 2.8445 3.7193 0.6781 7 6 2.2779 2.1157 1.1390 8 6 2.1040 1.6205 2.5087 9 8 2.4520 0.4904 2.7959 10 7 1.5588 2.4172 3.4492 11 6 1.0220 3.7375 3.0923 12 6 -0.4224 3.8343 3.5935 13 6 -0.4601 3.5245 5.0918 14 1 0.1796 4.2282 5.6243 15 6 -1.8963 3.6542 5.6031 16 7 -2.3332 5.0474 5.4842 17 6 -3.5932 5.4063 5.8825 18 1 -4.2648 4.6622 6.2847 19 6 -4.0069 6.7266 5.7704 20 7 -3.1882 7.6334 5.2807 21 14 -5.7255 7.2163 6.3144 22 1 -6.4426 6.0204 6.8251 23 1 -5.6326 8.2345 7.3912 24 1 -6.4675 7.7832 5.1597 25 6 0.0399 2.0982 5.3322 26 1 -0.5848 1.3959 4.7804 27 6 -0.0291 1.7780 6.8268 28 6 1.4844 1.9793 4.8498 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.9301 3.9658 -1.7975 35 1 1.6244 4.5157 3.5610 36 1 1.0420 3.8596 2.0094 37 1 -0.8006 4.8420 3.4207 38 1 -1.0425 3.1161 3.0572 39 1 -2.5519 3.0160 5.0105 40 1 -1.9389 3.3479 6.6482 41 1 -1.7300 5.7156 5.1226 42 1 -3.4772 8.5561 5.2027 43 1 -1.0603 1.8639 7.1695 44 1 0.3275 0.7623 6.9975 45 1 0.5966 2.4799 7.3780 46 1 1.8094 0.9417 4.9260 47 1 2.1253 2.6112 5.4646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184525821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:08 Heat of formation + Delta-G solvation = 11.156648 kcal Electronic energy + Delta-G solvation = -27658.123218 eV Core-core repulsion = 23967.594665 eV Total energy + Delta-G solvation = -3690.528553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81293 -39.77434 -37.97607 -35.07941 -33.77460 -33.63498 -32.05057 -30.45356 -30.13248 -27.14812 -26.96877 -25.81859 -23.83522 -23.45961 -22.64599 -21.75431 -20.96295 -19.73234 -18.70581 -18.56467 -17.20738 -16.81895 -16.46162 -15.63597 -15.17624 -14.85163 -14.67779 -14.50237 -14.32593 -14.10269 -14.00097 -13.80274 -13.56012 -13.28155 -12.97911 -12.73532 -12.59609 -12.44029 -12.17679 -11.97380 -11.89086 -11.67901 -11.45789 -11.12133 -11.02461 -10.92630 -10.85218 -10.45583 -10.42072 -10.23715 -10.22289 -9.97807 -9.91259 -9.66187 -9.52818 -9.08877 -8.88621 -8.70033 -6.92550 -5.79176 -3.06927 0.06010 0.88245 1.29519 2.26208 2.67690 2.96487 3.41477 3.47670 3.49445 3.85593 4.31702 4.56593 4.71738 4.74057 4.78590 4.89184 4.94998 5.06022 5.15690 5.21906 5.24996 5.30707 5.39001 5.46231 5.55489 5.64905 5.73568 5.77103 5.78817 5.81423 5.86770 5.93707 5.94722 6.03521 6.12243 6.18267 6.25147 6.29126 6.39943 6.46508 6.58117 6.80429 6.90253 7.17053 7.36196 7.69025 7.90780 8.40311 9.51657 10.09686 10.44242 11.43905 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.003028 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.246421 B = 9245.545180 C =10057.766572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C 0.138 3.862 4 N -0.471 5.471 5 C 0.023 3.977 6 S 0.182 5.818 7 C -0.289 4.289 8 C 0.600 3.400 9 O -0.528 6.528 10 N -0.599 5.599 11 C 0.096 3.904 12 C -0.123 4.123 13 C -0.089 4.089 14 H 0.073 0.927 15 C 0.157 3.843 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.098 4.098 26 H 0.074 0.926 27 C -0.146 4.146 28 C 0.120 3.880 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.205 0.795 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.016 0.984 40 H 0.025 0.975 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.612 -10.969 -9.453 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C 0.001 3.999 4 N -0.184 5.184 5 C -0.273 4.273 6 S 0.438 5.562 7 C -0.413 4.413 8 C 0.386 3.614 9 O -0.407 6.407 10 N -0.331 5.331 11 C -0.027 4.027 12 C -0.161 4.161 13 C -0.108 4.108 14 H 0.091 0.909 15 C 0.029 3.971 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.117 4.117 26 H 0.092 0.908 27 C -0.204 4.204 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.222 0.778 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.907 -10.808 -9.269 20.615 hybrid contribution -1.082 0.121 -0.049 1.090 sum 13.826 -10.687 -9.317 19.803 Atomic orbital electron populations 1.21689 0.93806 1.02357 1.02210 1.20399 0.96564 0.88620 1.04728 1.20609 0.96265 0.98073 0.84962 1.66101 1.14991 1.06144 1.31212 1.28776 1.01385 0.96073 1.01021 1.84194 1.58630 1.10951 1.02456 1.25437 1.17716 0.98934 0.99164 1.16718 0.77663 0.84663 0.82392 1.90783 1.51377 1.18174 1.80337 1.48022 1.58500 1.18084 1.08520 1.22157 0.96256 0.83406 1.00907 1.21911 0.93969 1.03930 0.96272 1.21347 0.98739 0.95298 0.95396 0.90857 1.20750 0.90870 0.88148 0.97299 1.42382 1.14862 1.03625 1.76752 1.19273 0.90552 0.92981 1.34014 0.91234 1.24712 0.98187 0.96000 1.02082 1.69658 1.35252 1.01691 1.51699 0.86140 0.84247 0.78149 0.77821 1.20587 1.21894 1.21895 1.21384 0.95388 0.97880 0.97080 0.90802 1.21827 1.03091 1.00859 0.94634 1.21681 0.97288 1.01671 0.79585 0.92641 0.92370 0.91608 0.89840 0.88220 0.77828 0.90593 0.90085 0.89057 0.91731 0.96578 0.95722 0.78337 0.93613 0.91221 0.92926 0.92464 0.88933 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 37.16 0.37 -1.13 16 2 C -0.06 -0.71 6.13 -27.88 -0.17 -0.88 16 3 C 0.14 1.70 6.04 -83.89 -0.51 1.19 16 4 N -0.47 -5.44 10.50 -11.53 -0.12 -5.56 16 5 C 0.02 0.20 12.22 51.75 0.63 0.83 16 6 S 0.18 1.66 20.36 -107.50 -2.19 -0.53 16 7 C -0.29 -3.54 5.36 -37.09 -0.20 -3.74 16 8 C 0.60 8.23 7.30 -12.85 -0.09 8.14 16 9 O -0.53 -8.42 14.67 5.21 0.08 -8.34 16 10 N -0.60 -7.56 2.98 -174.58 -0.52 -8.08 16 11 C 0.10 1.15 5.69 -3.71 -0.02 1.13 16 12 C -0.12 -1.77 5.25 -26.61 -0.14 -1.91 16 13 C -0.09 -1.33 1.73 -90.58 -0.16 -1.49 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.16 3.01 5.41 -4.04 -0.02 2.98 16 16 N -0.73 -17.79 5.32 -59.91 -0.32 -18.11 16 17 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C -0.10 -1.24 2.40 -90.72 -0.22 -1.46 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 C -0.15 -1.70 8.82 37.16 0.33 -1.37 16 28 C 0.12 1.43 5.70 -3.93 -0.02 1.41 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.24 6.21 -51.93 -0.32 0.91 16 34 H 0.21 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.92 4.60 -40.36 -0.19 0.73 16 37 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.03 0.48 6.14 -51.93 -0.32 0.16 16 41 H 0.38 9.66 6.85 -40.82 -0.28 9.38 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.07 0.88 6.29 -51.93 -0.33 0.56 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.15 6.99 -51.93 -0.36 0.79 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -32.10 381.33 -9.30 -41.40 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.21 Total: 6.64 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.47 Total: -3.45 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.24 Total: -58.58 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.19 Total: -0.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.10 -9.30 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184525821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.556 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds