Wall clock time and date at job start Tue Mar 31 2020 21:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29434 * 124.80575 * 2 1 4 4 C 1.30941 * 117.36291 * 179.68688 * 3 2 1 5 5 C 1.35669 * 114.19194 * 0.52825 * 4 3 2 6 6 C 1.46678 * 126.12846 * 179.78689 * 5 4 3 7 7 O 1.21679 * 120.00522 * 359.70935 * 6 5 4 8 8 N 1.34783 * 119.99846 * 179.71500 * 6 5 4 9 9 C 1.46492 * 120.00293 * 174.86510 * 8 6 5 10 10 C 1.53007 * 109.46884 * 303.76858 * 9 8 6 11 11 N 1.46495 * 109.47227 * 305.52239 * 10 9 8 12 12 C 1.36934 * 120.00040 * 175.04023 * 11 10 9 13 13 H 1.08004 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.38820 * 120.00063 * 180.02562 * 12 11 10 15 15 N 1.31614 * 119.99625 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 119.99916 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47332 * 90.00261 * 16 14 12 18 18 H 1.48504 * 109.47062 * 210.00114 * 16 14 12 19 19 H 1.48499 * 109.47570 * 330.00022 * 16 14 12 20 20 C 1.52996 * 109.47373 * 183.77194 * 9 8 6 21 21 C 1.53001 * 109.47157 * 299.99694 * 20 9 8 22 22 C 1.53006 * 109.47196 * 300.00102 * 21 20 9 23 23 C 1.53004 * 109.46995 * 59.99709 * 22 21 20 24 24 C 1.52999 * 109.47417 * 63.76628 * 9 8 6 25 25 H 1.08996 * 109.47204 * 300.00879 * 24 9 8 26 26 C 1.52996 * 109.47155 * 180.02562 * 24 9 8 27 27 S 1.70950 * 124.80495 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46653 * 270.02698 * 1 2 3 29 29 H 1.09004 * 109.46944 * 30.01875 * 1 2 3 30 30 H 1.08995 * 109.47104 * 150.02262 * 1 2 3 31 31 H 1.07999 * 122.90752 * 180.34142 * 4 3 2 32 32 H 0.97007 * 119.99187 * 354.58341 * 8 6 5 33 33 H 1.08996 * 109.46912 * 65.52482 * 10 9 8 34 34 H 1.09004 * 109.47172 * 185.52029 * 10 9 8 35 35 H 0.97006 * 119.99971 * 355.04364 * 11 10 9 36 36 H 0.97004 * 119.99877 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.47531 * 59.99696 * 20 9 8 38 38 H 1.08998 * 109.47543 * 179.97438 * 20 9 8 39 39 H 1.08998 * 109.46769 * 59.99679 * 21 20 9 40 40 H 1.08998 * 109.47765 * 179.97438 * 21 20 9 41 41 H 1.08993 * 109.47051 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.46858 * 300.00039 * 22 21 20 43 43 H 1.09006 * 109.47265 * 59.99881 * 23 22 21 44 44 H 1.08996 * 109.47376 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47253 * 60.00641 * 26 24 9 46 46 H 1.09005 * 109.47103 * 180.02562 * 26 24 9 47 47 H 1.08997 * 109.47409 * 299.99771 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5442 0.8932 0.0064 5 6 3.9352 -0.4059 0.0008 6 6 5.3189 -0.8926 0.0013 7 8 6.2425 -0.1005 0.0018 8 7 5.5673 -2.2173 0.0011 9 6 6.9443 -2.7044 -0.1120 10 6 7.5832 -2.1373 -1.3813 11 7 6.7426 -2.4595 -2.5370 12 6 7.0611 -1.9662 -3.7741 13 1 7.9322 -1.3399 -3.8979 14 6 6.2642 -2.2711 -4.8692 15 7 5.2023 -3.0338 -4.7182 16 14 6.6991 -1.5987 -6.5567 17 1 7.5941 -2.5558 -7.2554 18 1 5.4577 -1.4123 -7.3502 19 1 7.3911 -0.2934 -6.4064 20 6 6.9405 -4.2328 -0.1820 21 6 6.3016 -4.7999 1.0873 22 6 7.1046 -4.3473 2.3085 23 6 7.1083 -2.8188 2.3785 24 6 7.7473 -2.2517 1.1091 25 1 7.7499 -1.1629 1.1590 26 6 9.1855 -2.7599 0.9907 27 16 2.4828 -1.4037 0.0006 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 4.2434 1.7162 0.0123 32 1 4.8346 -2.8481 0.0799 33 1 7.6753 -1.0552 -1.2894 34 1 8.5718 -2.5758 -1.5176 35 1 5.9603 -3.0223 -2.4260 36 1 4.6453 -3.2466 -5.4833 37 1 6.3685 -4.5553 -1.0519 38 1 7.9650 -4.5952 -0.2665 39 1 5.2771 -4.4375 1.1714 40 1 6.2985 -5.8887 1.0373 41 1 6.6491 -4.7509 3.2128 42 1 8.1291 -4.7096 2.2244 43 1 6.0837 -2.4564 2.4626 44 1 7.6807 -2.4963 3.2482 45 1 9.6405 -2.3555 0.0865 46 1 9.7575 -2.4378 1.8610 47 1 9.1832 -3.8487 0.9407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698654321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:17 Heat of formation + Delta-G solvation = 9.196121 kcal Electronic energy + Delta-G solvation = -28648.899637 eV Core-core repulsion = 24958.286069 eV Total energy + Delta-G solvation = -3690.613568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66879 -39.64094 -37.79501 -34.71097 -33.33917 -32.38131 -31.96468 -31.18393 -29.57143 -28.57183 -26.42503 -25.06413 -24.27808 -22.97271 -22.03708 -21.96559 -20.43339 -19.45919 -18.51532 -17.85585 -17.09524 -16.82949 -15.59301 -15.40784 -15.19885 -14.96769 -14.51375 -14.29154 -14.06061 -13.84166 -13.69166 -13.42570 -13.23410 -12.95381 -12.68842 -12.63443 -12.49750 -12.36948 -12.25375 -11.97222 -11.50635 -11.47321 -11.42704 -11.10050 -10.93720 -10.79656 -10.73214 -10.26574 -10.12360 -10.08603 -9.98588 -9.70761 -9.62368 -9.40008 -9.28037 -8.82188 -8.75044 -8.50283 -6.81466 -5.71245 -2.96964 0.36416 1.23951 1.65222 2.61194 3.34749 3.46831 3.52325 3.54399 3.61031 4.09291 4.63725 4.78690 4.87374 4.90403 4.92734 5.10124 5.24298 5.26614 5.30696 5.31442 5.40977 5.50802 5.55604 5.64475 5.67663 5.69470 5.75415 5.79916 5.82893 6.00426 6.07896 6.16513 6.17668 6.19917 6.21553 6.30368 6.44033 6.51653 6.54327 6.61736 6.73679 6.92559 7.11711 7.64151 7.77275 7.85129 8.48319 8.53172 9.59823 10.17784 10.53394 11.51920 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007108 B = 0.006138 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3938.014454 B = 4560.543052 C = 7254.554980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 N -0.480 5.480 4 C 0.111 3.889 5 C -0.274 4.274 6 C 0.606 3.394 7 O -0.519 6.519 8 N -0.702 5.702 9 C 0.183 3.817 10 C 0.139 3.861 11 N -0.725 5.725 12 C -0.228 4.228 13 H 0.068 0.932 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.903 3.097 17 H -0.291 1.291 18 H -0.293 1.293 19 H -0.283 1.283 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.109 4.109 24 C -0.100 4.100 25 H 0.090 0.910 26 C -0.148 4.148 27 S 0.168 5.832 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.186 0.814 32 H 0.392 0.608 33 H 0.048 0.952 34 H 0.024 0.976 35 H 0.381 0.619 36 H 0.252 0.748 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 -1.869 16.962 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.228 4.228 3 N -0.195 5.195 4 C -0.046 4.046 5 C -0.398 4.398 6 C 0.391 3.609 7 O -0.396 6.396 8 N -0.353 5.353 9 C 0.098 3.902 10 C 0.011 3.989 11 N -0.369 5.369 12 C -0.359 4.359 13 H 0.086 0.914 14 C -0.211 4.211 15 N -0.585 5.585 16 Si 0.735 3.265 17 H -0.218 1.218 18 H -0.219 1.219 19 H -0.209 1.209 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.147 4.147 24 C -0.119 4.119 25 H 0.109 0.891 26 C -0.205 4.205 27 S 0.424 5.576 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.203 0.797 32 H 0.227 0.773 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.215 0.785 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.060 -1.807 16.796 17.634 hybrid contribution 0.121 0.606 -1.159 1.314 sum -4.938 -1.201 15.636 16.442 Atomic orbital electron populations 1.20486 0.84987 1.04576 1.03863 1.27386 1.02079 0.91295 1.02070 1.66186 1.04892 1.31264 1.17128 1.22099 0.90602 0.95617 0.96308 1.25892 0.98236 0.97657 1.18049 1.16487 0.85541 0.82720 0.76154 1.90756 1.43817 1.55355 1.49703 1.45787 1.09306 1.05809 1.74374 1.20581 0.80487 0.93517 0.95625 1.21161 0.93372 0.99015 0.85332 1.42232 1.30853 1.60643 1.03184 1.19222 1.07585 1.23896 0.85238 0.91408 1.24660 0.97751 1.00893 0.97792 1.69643 1.17343 1.41883 1.29655 0.86228 0.77003 0.78510 0.84748 1.21849 1.21923 1.20869 1.21836 1.02806 0.93343 0.98073 1.21560 0.99102 1.00192 0.94873 1.21578 1.00567 0.96039 0.97522 1.21503 1.00661 0.95236 0.97312 1.21458 0.94744 1.02152 0.93580 0.89132 1.21958 0.95496 1.01276 1.01794 1.83833 0.96823 1.11515 1.65469 0.89449 0.89074 0.89816 0.79709 0.77344 0.93442 0.95812 0.78526 0.93780 0.90245 0.90043 0.92525 0.91848 0.92609 0.91633 0.92428 0.92419 0.91944 0.93080 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.46 36.01 0.38 -0.29 16 2 C 0.05 0.60 7.39 -13.29 -0.10 0.50 16 3 N -0.48 -7.31 10.51 -11.50 -0.12 -7.43 16 4 C 0.11 1.79 11.09 -18.85 -0.21 1.58 16 5 C -0.27 -4.51 6.48 -37.10 -0.24 -4.75 16 6 C 0.61 11.05 7.19 -12.85 -0.09 10.96 16 7 O -0.52 -10.77 13.16 5.21 0.07 -10.70 16 8 N -0.70 -11.45 3.57 -48.90 -0.17 -11.62 16 9 C 0.18 2.99 0.09 -131.82 -0.01 2.97 16 10 C 0.14 2.93 4.27 -4.04 -0.02 2.92 16 11 N -0.72 -18.35 5.18 -59.91 -0.31 -18.66 16 12 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 13 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 14 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 15 N -0.94 -28.18 13.06 55.49 0.72 -27.46 16 16 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 18 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 20 C -0.12 -1.78 4.40 -26.73 -0.12 -1.90 16 21 C -0.12 -1.37 5.75 -26.73 -0.15 -1.52 16 22 C -0.12 -1.26 5.65 -26.73 -0.15 -1.41 16 23 C -0.11 -1.31 5.29 -26.73 -0.14 -1.45 16 24 C -0.10 -1.43 2.09 -90.62 -0.19 -1.62 16 25 H 0.09 1.52 6.27 -51.93 -0.33 1.20 16 26 C -0.15 -1.90 8.15 37.16 0.30 -1.59 16 27 S 0.17 2.20 22.32 -107.50 -2.40 -0.20 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.19 2.84 8.06 -52.49 -0.42 2.42 16 32 H 0.39 5.74 6.39 -40.82 -0.26 5.48 16 33 H 0.05 1.13 6.25 -51.93 -0.32 0.80 16 34 H 0.02 0.50 6.74 -51.93 -0.35 0.16 16 35 H 0.38 9.91 6.47 -40.82 -0.26 9.64 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 1.34 7.11 -51.93 -0.37 0.97 16 38 H 0.08 1.15 6.43 -51.93 -0.33 0.82 16 39 H 0.06 0.63 6.78 -51.93 -0.35 0.28 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 43 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -33.30 371.51 -9.45 -42.76 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -6.83 Total: 12.49 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.99 Total: -2.84 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: 0.12 Total: -65.17 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.40 Total: -0.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.30 -9.45 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698654321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.955 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds