Wall clock time and date at job start Tue Mar 31 2020 20:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29021 * 124.91577 * 2 1 4 4 C 1.31787 * 117.12723 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75233 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46866 * 305.02631 * 5 4 3 7 7 C 1.52999 * 109.46623 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46953 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99692 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00146 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47037 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47073 * 64.99672 * 12 11 10 14 14 N 1.46503 * 109.46922 * 304.99345 * 12 11 10 15 15 C 1.36939 * 119.99701 * 154.99859 * 14 12 11 16 16 H 1.07989 * 120.00103 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99554 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99530 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00291 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.46962 * 89.99736 * 19 17 15 21 21 H 1.48501 * 109.47148 * 209.99552 * 19 17 15 22 22 H 1.48495 * 109.47006 * 330.00046 * 19 17 15 23 23 C 1.53004 * 109.46954 * 184.99963 * 12 11 10 24 24 C 1.52997 * 117.49423 * 248.73977 * 23 12 11 25 25 C 1.53004 * 117.49424 * 180.08657 * 23 12 11 26 26 C 1.33639 * 114.49738 * 0.23162 * 4 3 2 27 27 S 1.70979 * 124.91810 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46911 * 90.00130 * 1 2 3 29 29 H 1.09004 * 109.47467 * 210.00086 * 1 2 3 30 30 H 1.09000 * 109.47576 * 330.00327 * 1 2 3 31 31 H 1.08993 * 109.47512 * 185.02753 * 5 4 3 32 32 H 1.09000 * 109.47247 * 65.02462 * 5 4 3 33 33 H 1.09000 * 109.47050 * 299.99952 * 6 5 4 34 34 H 1.09001 * 109.46801 * 60.00064 * 6 5 4 35 35 H 1.09000 * 109.47486 * 299.99829 * 7 6 5 36 36 H 1.09001 * 109.47362 * 60.00551 * 7 6 5 37 37 H 0.96999 * 120.00043 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.46876 * 299.99570 * 11 10 8 39 39 H 1.08996 * 109.47565 * 59.99371 * 11 10 8 40 40 H 0.96999 * 119.99735 * 335.00804 * 14 12 11 41 41 H 0.97003 * 119.99567 * 180.02562 * 18 17 15 42 42 H 1.08997 * 115.55135 * 34.41198 * 23 12 11 43 43 H 1.08997 * 117.50068 * 0.02562 * 24 23 12 44 44 H 1.09003 * 117.49619 * 145.01931 * 24 23 12 45 45 H 1.09004 * 117.49238 * 214.97799 * 25 23 12 46 46 H 1.08993 * 117.50261 * 359.97438 * 25 23 12 47 47 H 1.08002 * 126.03735 * 179.76609 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2274 4.1125 -1.1821 8 6 4.9350 5.0232 -2.3467 9 8 4.0211 4.7674 -3.1019 10 7 5.6890 6.1219 -2.5490 11 6 5.4043 7.0074 -3.6808 12 6 6.3985 8.1704 -3.6810 13 1 7.4038 7.7889 -3.8591 14 7 6.3563 8.8491 -2.3834 15 6 7.4462 9.5508 -1.9420 16 1 8.3367 9.6043 -2.5507 17 6 7.4064 10.1935 -0.7122 18 7 8.4539 10.8684 -0.2883 19 14 5.8664 10.1004 0.3409 20 1 5.9516 8.9210 1.2393 21 1 5.7488 11.3361 1.1560 22 1 4.6747 9.9700 -0.5354 23 6 6.0252 9.1601 -4.7865 24 6 6.9711 9.2714 -5.9839 25 6 6.9065 10.3999 -4.9518 26 6 3.9354 -0.4006 -0.0039 27 16 2.4857 -1.4020 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 5.5448 1.6353 -0.0894 32 1 4.4369 2.5834 0.9312 33 1 4.3272 2.3907 -2.1132 34 1 3.2192 3.3388 -1.0925 35 1 5.1332 4.6712 -0.2509 36 1 6.2418 3.7235 -1.2714 37 1 6.4196 6.3266 -1.9448 38 1 5.4982 6.4485 -4.6119 39 1 4.3902 7.3967 -3.5915 40 1 5.5563 8.8012 -1.8368 41 1 8.4262 11.3171 0.5713 42 1 4.9578 9.2724 -4.9762 43 1 7.8591 8.6392 -5.9842 44 1 6.5260 9.4573 -6.9613 45 1 6.4188 11.3278 -5.2506 46 1 7.7518 10.5106 -4.2727 47 1 4.9546 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713109721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:05 Heat of formation + Delta-G solvation = 27.303313 kcal Electronic energy + Delta-G solvation = -25828.404879 eV Core-core repulsion = 22138.576498 eV Total energy + Delta-G solvation = -3689.828381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.24602 -39.46881 -37.66527 -35.07153 -34.60587 -33.43222 -32.39630 -31.23156 -29.34296 -28.53317 -27.39686 -24.06742 -23.15186 -22.35322 -21.74392 -21.52355 -20.21278 -19.97173 -19.55688 -17.92342 -17.65326 -16.60018 -15.90374 -15.80030 -15.44980 -15.31169 -15.13379 -14.61960 -14.22381 -14.17503 -13.82268 -13.80168 -13.43823 -13.21259 -12.96836 -12.82003 -12.59200 -12.51227 -12.36584 -11.97742 -11.54740 -11.51822 -11.35996 -11.29921 -10.94718 -10.89576 -10.77241 -10.73201 -10.27802 -9.88456 -9.75625 -9.70941 -9.68566 -9.48038 -9.37421 -9.02805 -8.94860 -8.71763 -7.37481 -5.84014 -3.20158 0.42730 1.07143 1.44022 2.52363 2.90563 3.31944 3.37798 3.41639 3.50337 3.77320 4.39875 4.52813 4.57716 4.73461 4.86402 4.94258 4.94850 5.06355 5.10940 5.12318 5.23474 5.33259 5.38010 5.42015 5.50777 5.53997 5.56554 5.58299 5.63142 5.67414 5.76354 5.91986 5.96263 5.99894 6.11852 6.13136 6.21465 6.32984 6.49847 6.55442 6.73196 6.82360 6.98846 7.50792 7.85854 7.90444 8.34012 8.51797 9.11712 9.84395 10.04009 11.33649 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.002110 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.519550 B =13270.022042 C =14299.542626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.466 5.466 4 C 0.079 3.921 5 C -0.047 4.047 6 C -0.093 4.093 7 C -0.143 4.143 8 C 0.509 3.491 9 O -0.553 6.553 10 N -0.719 5.719 11 C 0.116 3.884 12 C 0.199 3.801 13 H 0.064 0.936 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.931 5.931 19 Si 0.880 3.120 20 H -0.284 1.284 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.164 4.164 24 C -0.193 4.193 25 C -0.155 4.155 26 C -0.263 4.263 27 S 0.102 5.898 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.111 0.889 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 -23.292 -0.845 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 N -0.181 5.181 4 C -0.052 4.052 5 C -0.087 4.087 6 C -0.131 4.131 7 C -0.183 4.183 8 C 0.295 3.705 9 O -0.431 6.431 10 N -0.371 5.371 11 C -0.009 4.009 12 C 0.089 3.911 13 H 0.082 0.918 14 N -0.384 5.384 15 C -0.370 4.370 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.578 5.578 19 Si 0.711 3.289 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.186 4.186 24 C -0.231 4.231 25 C -0.192 4.192 26 C -0.401 4.401 27 S 0.356 5.644 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.129 0.871 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.006 -23.933 -1.331 26.376 hybrid contribution -0.071 1.012 1.089 1.488 sum -11.077 -22.921 -0.242 25.459 Atomic orbital electron populations 1.20463 0.85150 1.04223 1.04057 1.27085 1.01837 0.90792 1.02911 1.66084 1.04620 1.31440 1.15933 1.20311 0.90169 0.94251 1.00487 1.20282 0.95438 0.92701 1.00291 1.21207 0.99996 0.94522 0.97411 1.21690 1.01621 0.96966 0.98007 1.20638 0.81931 0.81555 0.86358 1.90672 1.30929 1.73672 1.47843 1.46060 1.35307 1.24741 1.31017 1.21616 0.99522 0.90944 0.88775 1.20024 0.96663 0.88870 0.85586 0.91845 1.42841 1.15937 1.62269 1.17399 1.19002 0.92710 1.24095 1.01232 0.89031 1.24648 0.96777 0.99683 0.97714 1.69693 1.28945 1.37820 1.21374 0.86623 0.84088 0.77330 0.80885 1.21095 1.21849 1.20353 1.22956 0.96264 1.01694 0.97642 1.22951 1.02063 1.04426 0.93686 1.22851 1.03506 0.91780 1.01053 1.26816 1.03033 0.95673 1.14594 1.83923 0.98313 1.13167 1.69012 0.89445 0.90136 0.89134 0.90042 0.89839 0.91430 0.90265 0.88695 0.88879 0.75415 0.91380 0.91985 0.80476 0.93028 0.89180 0.89409 0.90051 0.90209 0.87103 0.80589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.46 36.01 0.38 -0.12 16 2 C 0.05 0.50 7.39 -13.46 -0.10 0.40 16 3 N -0.47 -5.62 10.34 -8.06 -0.08 -5.70 16 4 C 0.08 0.86 6.08 -84.22 -0.51 0.35 16 5 C -0.05 -0.45 5.71 -27.88 -0.16 -0.61 16 6 C -0.09 -1.10 4.40 -26.73 -0.12 -1.22 16 7 C -0.14 -1.64 5.70 -27.88 -0.16 -1.80 16 8 C 0.51 7.84 7.83 -10.98 -0.09 7.76 16 9 O -0.55 -10.39 15.98 5.56 0.09 -10.30 16 10 N -0.72 -11.08 5.39 -60.30 -0.32 -11.41 16 11 C 0.12 1.87 5.22 -4.04 -0.02 1.85 16 12 C 0.20 3.52 2.70 -67.93 -0.18 3.34 16 13 H 0.06 1.15 7.84 -51.93 -0.41 0.75 16 14 N -0.74 -15.86 4.34 -53.42 -0.23 -16.09 16 15 C -0.24 -6.15 9.11 -15.06 -0.14 -6.28 16 16 H 0.09 2.52 7.14 -52.49 -0.37 2.14 16 17 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 18 N -0.93 -27.80 13.97 55.49 0.78 -27.03 16 19 Si 0.88 21.25 27.74 -169.99 -4.71 16.54 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 23 C -0.16 -2.78 5.36 -90.62 -0.49 -3.26 16 24 C -0.19 -2.91 10.18 -26.70 -0.27 -3.19 16 25 C -0.15 -2.75 9.78 -26.69 -0.26 -3.01 16 26 C -0.26 -2.33 11.07 29.12 0.32 -2.01 16 27 S 0.10 0.80 23.18 -107.50 -2.49 -1.69 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.08 1.12 8.03 -51.93 -0.42 0.71 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 6.18 8.14 -40.82 -0.33 5.85 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.36 7.92 5.66 -40.82 -0.23 7.69 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 43 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.11 2.29 6.23 -51.93 -0.32 1.97 16 47 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -32.41 401.27 -10.41 -42.82 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -7.58 Total: 14.49 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.89 Total: -7.68 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.13 Total: -60.22 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.41 -10.41 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713109721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.125 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds