Wall clock time and date at job start Tue Mar 31 2020 19:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47146 * 2 1 4 4 C 1.50699 * 109.47347 * 120.00471 * 2 1 3 5 5 S 1.70940 * 125.58490 * 307.86292 * 4 2 1 6 6 C 1.70764 * 91.12827 * 180.21814 * 5 4 2 7 7 N 1.28646 * 110.56386 * 359.82212 * 6 5 4 8 8 C 1.33565 * 115.76213 * 359.97438 * 7 6 5 9 9 C 1.47262 * 123.13945 * 179.97438 * 8 7 6 10 10 O 1.21636 * 119.99797 * 175.14260 * 9 8 7 11 11 N 1.34778 * 120.00075 * 354.85617 * 9 8 7 12 12 C 1.46502 * 119.99708 * 179.97438 * 11 9 8 13 13 C 1.53010 * 109.46866 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.58374 * 59.76873 * 13 12 11 15 15 C 1.53191 * 109.58339 * 180.02562 * 13 12 11 16 16 C 1.53047 * 109.30693 * 174.42281 * 15 13 12 17 17 C 1.53032 * 109.53948 * 298.63363 * 16 15 13 18 18 C 1.53195 * 109.31389 * 61.36488 * 17 16 15 19 19 N 1.46921 * 109.58433 * 299.34515 * 13 12 11 20 20 C 1.36939 * 120.63636 * 6.61921 * 19 13 12 21 21 H 1.07999 * 119.99846 * 322.37803 * 20 19 13 22 22 C 1.38803 * 120.00065 * 142.36677 * 20 19 13 23 23 N 1.31625 * 120.00085 * 349.36801 * 22 20 19 24 24 Si 1.86799 * 120.00134 * 169.36198 * 22 20 19 25 25 H 1.48496 * 109.46995 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47169 * 120.00236 * 24 22 20 27 27 H 1.48495 * 109.47330 * 240.00146 * 24 22 20 28 28 H 1.09001 * 109.46964 * 299.99619 * 1 2 3 29 29 H 1.09002 * 109.47309 * 59.99460 * 1 2 3 30 30 H 1.09004 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46964 * 240.00381 * 2 1 3 32 32 H 1.09001 * 109.46878 * 60.00328 * 3 2 1 33 33 H 1.08995 * 109.47182 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47458 * 300.00449 * 3 2 1 35 35 H 1.08004 * 124.72304 * 179.85560 * 6 5 4 36 36 H 0.96994 * 119.99846 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.47256 * 300.00423 * 12 11 9 38 38 H 1.08997 * 109.47086 * 60.00539 * 12 11 9 39 39 H 1.09000 * 109.49985 * 294.36940 * 15 13 12 40 40 H 1.08995 * 109.50067 * 54.44092 * 15 13 12 41 41 H 1.09000 * 109.46029 * 58.65866 * 16 15 13 42 42 H 1.08996 * 109.45498 * 178.62563 * 16 15 13 43 43 H 1.09001 * 109.49885 * 181.32037 * 17 16 15 44 44 H 1.08998 * 109.50267 * 301.41862 * 17 16 15 45 45 H 1.09013 * 109.58472 * 65.15198 * 18 17 16 46 46 H 1.08998 * 109.58834 * 185.43313 * 18 17 16 47 47 H 0.96998 * 120.00111 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 16 1.5595 -0.3713 2.8377 6 6 2.5928 -1.5925 3.4352 7 7 3.2111 -2.1742 2.4685 8 6 2.9291 -1.7223 1.2437 9 6 3.5432 -2.2699 0.0224 10 8 3.1802 -1.8765 -1.0699 11 7 4.5115 -3.2029 0.1150 12 6 5.1219 -3.7480 -1.1001 13 6 6.1837 -4.7814 -0.7178 14 1 5.7209 -5.5871 -0.1479 15 6 6.8243 -5.3528 -1.9867 16 6 7.9780 -6.2801 -1.5975 17 6 9.0404 -5.4837 -0.8366 18 6 8.4249 -4.9136 0.4452 19 7 7.2278 -4.1385 0.0915 20 6 7.0882 -2.8414 0.5079 21 1 6.6345 -2.1105 -0.1450 22 6 7.5297 -2.4661 1.7692 23 7 7.8875 -3.3846 2.6415 24 14 7.6161 -0.6576 2.2288 25 1 7.1617 0.1671 1.0805 26 1 6.7387 -0.4018 3.3993 27 1 9.0160 -0.3005 2.5721 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.7106 -1.8423 4.4793 36 1 4.8036 -3.5138 0.9861 37 1 4.3544 -4.2247 -1.7099 38 1 5.5870 -2.9412 -1.6665 39 1 6.0790 -5.9156 -2.5488 40 1 7.2041 -4.5370 -2.6016 41 1 7.6011 -7.0819 -0.9625 42 1 8.4200 -6.7071 -2.4977 43 1 9.8725 -6.1394 -0.5803 44 1 9.3999 -4.6665 -1.4620 45 1 8.1471 -5.7303 1.1117 46 1 9.1482 -4.2668 0.9416 47 1 8.1956 -3.1224 3.5231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024753783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:43 Heat of formation + Delta-G solvation = 13.899829 kcal Electronic energy + Delta-G solvation = -28465.906907 eV Core-core repulsion = 24775.497307 eV Total energy + Delta-G solvation = -3690.409600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.25329 -38.44079 -37.46177 -35.70943 -34.03217 -32.99223 -30.81610 -29.93472 -29.53197 -27.16732 -26.45914 -25.36509 -24.36890 -22.23459 -21.97681 -21.34853 -20.54443 -19.39982 -18.93833 -17.75846 -16.75305 -16.02396 -15.59969 -15.43356 -14.91283 -14.84495 -14.16262 -14.10019 -13.97973 -13.70502 -13.43361 -13.39191 -13.19759 -12.99469 -12.77722 -12.40759 -12.25490 -12.06166 -11.86481 -11.69250 -11.44077 -11.22546 -11.17578 -10.97691 -10.92833 -10.78014 -10.54536 -10.25178 -10.12256 -9.97613 -9.57675 -9.53314 -9.37497 -9.28518 -9.11682 -8.79552 -8.52565 -8.13822 -6.51695 -5.81050 -3.33415 0.73336 1.39307 1.79598 2.37086 3.32811 3.41475 3.44836 3.80896 3.97645 4.41979 4.46802 4.77753 4.94544 5.16724 5.26307 5.29123 5.36500 5.52414 5.55801 5.56181 5.62917 5.66925 5.71079 5.77711 5.90774 5.99664 6.02740 6.08429 6.14973 6.18414 6.25901 6.32336 6.38091 6.43843 6.52409 6.61682 6.73519 6.75129 6.87928 7.02816 7.24561 7.37523 7.62945 7.66859 7.84194 8.36467 8.48924 8.88564 9.21142 9.79809 10.42254 11.25745 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.004371 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.724101 B = 6403.759788 C = 7453.320301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.174 4.174 5 S 0.168 5.832 6 C -0.003 4.003 7 N -0.421 5.421 8 C 0.009 3.991 9 C 0.585 3.415 10 O -0.558 6.558 11 N -0.668 5.668 12 C 0.134 3.866 13 C 0.160 3.840 14 H 0.032 0.968 15 C -0.127 4.127 16 C -0.107 4.107 17 C -0.144 4.144 18 C 0.177 3.823 19 N -0.586 5.586 20 C -0.253 4.253 21 H 0.063 0.937 22 C 0.022 3.978 23 N -0.893 5.893 24 Si 0.887 3.113 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.289 1.289 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.137 0.863 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.201 0.799 36 H 0.425 0.575 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.075 0.925 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 2.833 -1.575 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.298 4.298 5 S 0.423 5.577 6 C -0.303 4.303 7 N -0.134 5.134 8 C -0.126 4.126 9 C 0.368 3.632 10 O -0.439 6.439 11 N -0.317 5.317 12 C 0.010 3.990 13 C 0.053 3.947 14 H 0.049 0.951 15 C -0.166 4.166 16 C -0.144 4.144 17 C -0.183 4.183 18 C 0.052 3.948 19 N -0.310 5.310 20 C -0.383 4.383 21 H 0.080 0.920 22 C -0.178 4.178 23 N -0.535 5.535 24 Si 0.717 3.283 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.216 1.216 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.218 0.782 36 H 0.265 0.735 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.093 0.907 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.010 3.309 -1.517 12.550 hybrid contribution 0.889 0.417 0.352 1.043 sum -11.121 3.726 -1.165 11.787 Atomic orbital electron populations 1.21896 0.94222 1.02057 1.01789 1.20259 0.95446 0.95858 0.95404 1.21857 1.01826 0.94549 1.01651 1.25568 1.02194 1.01243 1.00799 1.82570 1.41880 1.36052 0.97155 1.28332 0.99533 0.98756 1.03705 1.67001 1.21486 1.26807 0.98092 1.20500 1.00890 0.98534 0.92648 1.16997 0.80035 0.79966 0.86172 1.90576 1.64602 1.61521 1.27242 1.45880 1.34825 1.39034 1.11975 1.21341 0.94264 0.96812 0.86573 1.20746 0.89117 0.93093 0.91756 0.95090 1.21937 0.97549 0.98906 0.98251 1.21350 0.96533 0.97721 0.98835 1.22194 0.97039 0.98738 1.00367 1.20673 0.88894 0.94265 0.90980 1.43980 1.15333 1.10986 1.60716 1.19025 1.38403 0.84925 0.95901 0.91979 1.25164 1.00630 0.96643 0.95407 1.69984 1.47094 1.31132 1.05319 0.86450 0.77329 0.86171 0.78360 1.20283 1.21534 1.21560 0.92982 0.91767 0.92395 0.84545 0.93038 0.92245 0.91769 0.78243 0.73527 0.92547 0.91409 0.93060 0.92103 0.92865 0.93739 0.93576 0.92835 0.96243 0.90710 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.02 37.16 0.33 -1.23 16 2 C -0.05 -0.69 3.10 -91.77 -0.28 -0.98 16 3 C -0.14 -1.78 9.18 37.16 0.34 -1.44 16 4 C -0.17 -2.73 5.05 -35.39 -0.18 -2.91 16 5 S 0.17 2.06 22.35 -107.50 -2.40 -0.34 16 6 C 0.00 -0.04 12.17 51.43 0.63 0.58 16 7 N -0.42 -7.83 10.13 -12.36 -0.13 -7.96 16 8 C 0.01 0.16 6.70 -84.53 -0.57 -0.40 16 9 C 0.58 12.10 7.79 -12.59 -0.10 12.00 16 10 O -0.56 -11.85 13.87 5.25 0.07 -11.78 16 11 N -0.67 -14.08 3.97 -61.43 -0.24 -14.33 16 12 C 0.13 2.65 4.44 -4.04 -0.02 2.63 16 13 C 0.16 3.20 3.00 -67.60 -0.20 3.00 16 14 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 15 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 16 C -0.11 -1.77 5.88 -26.69 -0.16 -1.93 16 17 C -0.14 -2.69 6.08 -26.61 -0.16 -2.86 16 18 C 0.18 4.06 5.22 -3.71 -0.02 4.04 16 19 N -0.59 -13.75 2.94 -164.76 -0.48 -14.24 16 20 C -0.25 -6.53 6.69 -15.06 -0.10 -6.63 16 21 H 0.06 1.68 6.21 -52.49 -0.33 1.35 16 22 C 0.02 0.59 5.02 -17.43 -0.09 0.51 16 23 N -0.89 -24.84 11.55 55.49 0.64 -24.20 16 24 Si 0.89 21.95 29.57 -169.99 -5.03 16.92 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H 0.05 0.51 7.78 -51.93 -0.40 0.10 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.14 2.28 4.97 -51.93 -0.26 2.02 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.20 2.19 8.06 -52.48 -0.42 1.77 16 36 H 0.43 9.76 6.96 -40.82 -0.28 9.48 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.44 7.38 -51.93 -0.38 1.05 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 46 H 0.07 1.92 6.62 -51.93 -0.34 1.58 16 47 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -29.50 380.70 -10.02 -39.52 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.48 Total: 8.58 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.72 Total: 2.08 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.21 Total: -60.72 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.40 Total: -0.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.50 -10.02 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024753783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.424 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds