Wall clock time and date at job start Tue Mar 31 2020 19:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47212 * 2 1 4 4 C 1.50700 * 109.46970 * 119.99559 * 2 1 3 5 5 S 1.70941 * 125.58915 * 294.74349 * 4 2 1 6 6 C 1.70771 * 91.13015 * 179.97438 * 5 4 2 7 7 N 1.28640 * 110.55941 * 359.97438 * 6 5 4 8 8 C 1.33561 * 115.76661 * 359.75979 * 7 6 5 9 9 C 1.47276 * 123.14154 * 180.25178 * 8 7 6 10 10 O 1.21627 * 119.99939 * 185.35821 * 9 8 7 11 11 N 1.34774 * 119.99722 * 5.35777 * 9 8 7 12 12 C 1.46505 * 119.99568 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46930 * 180.02562 * 12 11 9 14 14 H 1.09009 * 109.58832 * 300.12959 * 13 12 11 15 15 C 1.53188 * 109.58880 * 179.70200 * 13 12 11 16 16 C 1.53040 * 109.31753 * 185.58004 * 15 13 12 17 17 C 1.53034 * 109.53989 * 61.36072 * 16 15 13 18 18 C 1.53188 * 109.31417 * 298.64241 * 17 16 15 19 19 N 1.46926 * 108.78150 * 54.62968 * 18 17 16 20 20 C 1.36938 * 120.63251 * 126.36535 * 19 18 17 21 21 H 1.07997 * 120.00276 * 212.63679 * 20 19 18 22 22 C 1.38814 * 119.99530 * 32.63989 * 20 19 18 23 23 N 1.31617 * 120.00088 * 10.14974 * 22 20 19 24 24 Si 1.86801 * 119.99636 * 190.14832 * 22 20 19 25 25 H 1.48498 * 109.47018 * 90.00055 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00090 * 24 22 20 27 27 H 1.48498 * 109.47200 * 330.00002 * 24 22 20 28 28 H 1.08998 * 109.47195 * 300.00396 * 1 2 3 29 29 H 1.09005 * 109.46724 * 60.00386 * 1 2 3 30 30 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47613 * 239.99938 * 2 1 3 32 32 H 1.08999 * 109.46882 * 59.99491 * 3 2 1 33 33 H 1.09000 * 109.47329 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46807 * 300.00238 * 3 2 1 35 35 H 1.08002 * 124.71630 * 179.97438 * 6 5 4 36 36 H 0.97002 * 120.00327 * 0.02562 * 11 9 8 37 37 H 1.08996 * 109.47677 * 300.00481 * 12 11 9 38 38 H 1.08998 * 109.46500 * 60.00678 * 12 11 9 39 39 H 1.09003 * 109.49492 * 305.53053 * 15 13 12 40 40 H 1.08998 * 109.49966 * 65.62615 * 15 13 12 41 41 H 1.09000 * 109.45567 * 301.34259 * 16 15 13 42 42 H 1.08996 * 109.45011 * 181.38132 * 16 15 13 43 43 H 1.08995 * 109.50328 * 178.68248 * 17 16 15 44 44 H 1.09004 * 109.49503 * 58.58993 * 17 16 15 45 45 H 1.08998 * 109.58478 * 294.84073 * 18 17 16 46 46 H 1.09007 * 109.70759 * 174.49146 * 18 17 16 47 47 H 0.97001 * 119.99835 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 16 1.8153 -0.1828 2.8420 6 6 2.6653 -1.5395 3.4363 7 7 3.0544 -2.2893 2.4661 8 6 2.7228 -1.8727 1.2413 9 6 3.0803 -2.6082 0.0164 10 8 2.8350 -2.1288 -1.0742 11 7 3.6792 -3.8123 0.1040 12 6 4.0343 -4.5442 -1.1144 13 6 4.6956 -5.8714 -0.7377 14 1 5.5955 -5.6784 -0.1534 15 6 5.0614 -6.6423 -2.0099 16 6 5.5938 -8.0255 -1.6283 17 6 4.5062 -8.8058 -0.8865 18 6 4.1342 -8.0594 0.3984 19 7 3.7592 -6.6813 0.0533 20 6 2.5593 -6.1619 0.4606 21 1 2.0455 -5.4406 -0.1575 22 6 2.0037 -6.5625 1.6679 23 7 2.7125 -7.2816 2.5122 24 14 0.2499 -6.0809 2.0943 25 1 -0.6838 -7.1257 1.6025 26 1 0.1164 -5.9516 3.5677 27 1 -0.0771 -4.7827 1.4518 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9563 0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.8504 -1.7400 4.4813 36 1 3.8745 -4.1948 0.9738 37 1 3.1337 -4.7397 -1.6964 38 1 4.7277 -3.9477 -1.7073 39 1 4.1755 -6.7533 -2.6353 40 1 5.8285 -6.0959 -2.5586 41 1 6.4649 -7.9137 -0.9827 42 1 5.8777 -8.5667 -2.5308 43 1 4.8780 -9.7991 -0.6356 44 1 3.6256 -8.8964 -1.5225 45 1 4.9892 -8.0470 1.0744 46 1 3.2933 -8.5567 0.8821 47 1 2.3243 -7.5612 3.3560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024753784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:46 Heat of formation + Delta-G solvation = 16.672142 kcal Electronic energy + Delta-G solvation = -28443.584190 eV Core-core repulsion = 24753.294807 eV Total energy + Delta-G solvation = -3690.289383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.27480 -38.46887 -37.47779 -35.72008 -34.05577 -33.01930 -30.83254 -29.88464 -29.54269 -27.17463 -26.47230 -25.38592 -24.38491 -22.23327 -21.97200 -21.36109 -20.55218 -19.40412 -18.94933 -17.77569 -16.77642 -16.03986 -15.63228 -15.45904 -14.94241 -14.84025 -14.17180 -14.08578 -13.96295 -13.71724 -13.42246 -13.40970 -13.21288 -13.00549 -12.77888 -12.40027 -12.26285 -12.06348 -11.87866 -11.70785 -11.44936 -11.23412 -11.19432 -10.99035 -10.89865 -10.76573 -10.51560 -10.26040 -10.10485 -9.95833 -9.59746 -9.50486 -9.39746 -9.29826 -9.13128 -8.80997 -8.52340 -8.15193 -6.58547 -5.79386 -3.27563 0.72001 1.37907 1.78242 2.35033 3.34787 3.41625 3.44456 3.79232 3.94851 4.40324 4.47304 4.76526 4.93558 5.16026 5.24848 5.28231 5.37402 5.51132 5.55120 5.55403 5.61706 5.67467 5.71590 5.76843 5.90054 5.99236 6.01892 6.07090 6.13627 6.17805 6.24638 6.31224 6.38350 6.43671 6.51438 6.61856 6.74307 6.76443 6.89498 7.01608 7.21972 7.42495 7.64633 7.71069 7.82991 8.33318 8.46678 8.85723 9.21766 9.81894 10.40423 11.27685 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.004351 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.760638 B = 6434.134228 C = 7496.567883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.141 4.141 4 C -0.174 4.174 5 S 0.169 5.831 6 C -0.003 4.003 7 N -0.422 5.422 8 C 0.009 3.991 9 C 0.586 3.414 10 O -0.557 6.557 11 N -0.670 5.670 12 C 0.133 3.867 13 C 0.160 3.840 14 H 0.032 0.968 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.144 4.144 18 C 0.174 3.826 19 N -0.588 5.588 20 C -0.249 4.249 21 H 0.067 0.933 22 C 0.015 3.985 23 N -0.898 5.898 24 Si 0.892 3.108 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.202 0.798 36 H 0.425 0.575 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.086 0.914 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 12.304 -1.337 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.298 4.298 5 S 0.424 5.576 6 C -0.304 4.304 7 N -0.135 5.135 8 C -0.125 4.125 9 C 0.369 3.631 10 O -0.439 6.439 11 N -0.319 5.319 12 C 0.009 3.991 13 C 0.053 3.947 14 H 0.050 0.950 15 C -0.166 4.166 16 C -0.145 4.145 17 C -0.184 4.184 18 C 0.048 3.952 19 N -0.312 5.312 20 C -0.379 4.379 21 H 0.084 0.916 22 C -0.184 4.184 23 N -0.542 5.542 24 Si 0.722 3.278 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.218 0.782 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.104 0.896 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.594 12.841 -1.279 12.919 hybrid contribution -0.661 -0.709 0.281 1.009 sum -0.067 12.133 -0.999 12.174 Atomic orbital electron populations 1.21870 0.94018 1.02380 1.01679 1.20273 0.95778 0.95561 0.95425 1.21886 1.01421 0.94799 1.01775 1.25570 1.03755 0.99639 1.00794 1.82576 1.51752 1.26331 0.96917 1.28334 1.02731 0.95629 1.03670 1.66989 1.19515 1.28941 0.98050 1.20485 1.03921 0.95517 0.92623 1.16995 0.78420 0.81477 0.86191 1.90573 1.57022 1.68811 1.27447 1.45902 1.57257 1.16837 1.11907 1.21360 0.99475 0.91723 0.86554 1.20737 0.92791 0.89250 0.91956 0.95049 1.21933 1.00073 0.96377 0.98235 1.21357 0.98370 0.95858 0.98889 1.22201 0.97740 0.97905 1.00513 1.20770 0.99361 0.84196 0.90844 1.44047 1.16696 1.08668 1.61771 1.19116 0.95634 1.23319 0.99842 0.91552 1.25058 0.97962 0.99997 0.95387 1.69966 1.35137 1.40118 1.08963 0.86442 0.85547 0.78444 0.77363 1.21510 1.21677 1.20569 0.93013 0.91760 0.92255 0.84515 0.92998 0.92397 0.91768 0.78189 0.73573 0.91379 0.92453 0.92084 0.93054 0.92893 0.93757 0.93585 0.92880 0.96446 0.89582 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.16 37.16 0.34 -1.43 16 2 C -0.05 -0.70 3.12 -91.77 -0.29 -0.99 16 3 C -0.14 -1.56 9.05 37.16 0.34 -1.22 16 4 C -0.17 -2.71 5.03 -35.39 -0.18 -2.89 16 5 S 0.17 2.05 22.44 -107.50 -2.41 -0.37 16 6 C 0.00 -0.05 12.17 51.43 0.63 0.58 16 7 N -0.42 -7.75 10.13 -12.36 -0.13 -7.87 16 8 C 0.01 0.17 6.70 -84.52 -0.57 -0.40 16 9 C 0.59 12.06 7.79 -12.59 -0.10 11.96 16 10 O -0.56 -11.79 13.86 5.25 0.07 -11.72 16 11 N -0.67 -14.01 3.88 -61.43 -0.24 -14.25 16 12 C 0.13 2.61 4.43 -4.04 -0.02 2.59 16 13 C 0.16 3.19 3.01 -67.60 -0.20 2.98 16 14 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 15 C -0.13 -2.16 5.37 -26.61 -0.14 -2.30 16 16 C -0.11 -1.79 5.88 -26.69 -0.16 -1.94 16 17 C -0.14 -2.73 6.08 -26.62 -0.16 -2.89 16 18 C 0.17 4.01 5.25 -3.71 -0.02 3.99 16 19 N -0.59 -13.82 2.97 -164.78 -0.49 -14.31 16 20 C -0.25 -6.44 6.93 -15.06 -0.10 -6.55 16 21 H 0.07 1.78 5.93 -52.49 -0.31 1.47 16 22 C 0.02 0.42 5.05 -17.43 -0.09 0.33 16 23 N -0.90 -25.05 11.11 55.49 0.62 -24.43 16 24 Si 0.89 22.06 29.57 -169.99 -5.03 17.03 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.14 2.29 4.95 -51.93 -0.26 2.03 16 32 H 0.05 0.50 7.84 -51.93 -0.41 0.10 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.20 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.42 9.64 6.94 -40.82 -0.28 9.36 16 37 H 0.07 1.43 7.40 -51.93 -0.38 1.05 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.24 6.18 -51.92 -0.32 1.92 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -29.58 379.88 -10.04 -39.61 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.44 Total: 8.77 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.72 Total: 1.82 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.24 Total: -60.87 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.41 Total: -0.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.58 -10.04 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024753784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.286 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds