Wall clock time and date at job start Tue Mar 31 2020 19:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47507 * 2 1 4 4 N 1.29429 * 124.80447 * 89.97179 * 3 2 1 5 5 C 1.30945 * 117.36274 * 180.02562 * 4 3 2 6 6 C 1.50702 * 122.90404 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19341 * 359.97438 * 5 4 3 8 8 C 1.46685 * 126.13362 * 180.02562 * 7 5 4 9 9 O 1.21684 * 119.99375 * 0.02562 * 8 7 5 10 10 N 1.34770 * 120.00245 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00256 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47473 * 205.00145 * 11 10 8 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 15 15 N 1.46505 * 109.46998 * 180.02562 * 14 13 12 16 16 C 1.36939 * 119.99584 * 204.99673 * 15 14 13 17 17 H 1.07993 * 120.00301 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99501 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00187 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99877 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47101 * 90.00007 * 20 18 16 22 22 H 1.48504 * 109.47431 * 209.99887 * 20 18 16 23 23 H 1.48498 * 109.47164 * 330.00128 * 20 18 16 24 24 C 1.53002 * 109.46891 * 299.99597 * 14 13 12 25 25 C 1.52997 * 109.46978 * 60.00410 * 24 14 13 26 26 S 1.70954 * 124.80301 * 270.33331 * 3 2 1 27 27 H 1.09003 * 109.46727 * 60.00177 * 1 2 3 28 28 H 1.08997 * 109.46952 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46818 * 299.99987 * 1 2 3 30 30 H 1.09003 * 109.47386 * 239.99505 * 2 1 3 31 31 H 1.09004 * 109.47244 * 120.00384 * 2 1 3 32 32 H 1.09000 * 109.46575 * 269.99750 * 6 5 4 33 33 H 1.09006 * 109.46845 * 29.99256 * 6 5 4 34 34 H 1.08993 * 109.47550 * 149.99483 * 6 5 4 35 35 H 0.97005 * 120.00370 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.46845 * 325.00694 * 11 10 8 37 37 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 39 39 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 41 41 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 42 42 H 0.97001 * 119.99745 * 24.99557 * 15 14 13 43 43 H 0.96998 * 120.00284 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.47097 * 180.02562 * 24 14 13 45 45 H 1.09001 * 109.47142 * 300.00176 * 24 14 13 46 46 H 1.09001 * 109.47375 * 59.99908 * 25 24 14 47 47 H 1.09000 * 109.47140 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2782 2.1174 1.0627 5 6 2.7107 3.3417 0.8932 6 6 3.0359 4.2615 2.0417 7 6 2.8417 3.7101 -0.4059 8 6 3.3033 5.0145 -0.8926 9 8 3.6113 5.8852 -0.1004 10 7 3.3863 5.2486 -2.2173 11 6 3.8479 6.5513 -2.7034 12 6 3.2891 6.7994 -4.1059 13 6 3.7717 8.1596 -4.6139 14 6 5.3008 8.1719 -4.6646 15 7 5.7628 9.4745 -5.1504 16 6 6.9840 9.5839 -5.7602 17 1 7.6063 8.7099 -5.8834 18 6 7.4216 10.8181 -6.2209 19 7 6.6629 11.8832 -6.0712 20 14 9.0871 10.9673 -7.0534 21 1 8.9307 10.7555 -8.5149 22 1 9.6446 12.3214 -6.8064 23 1 10.0102 9.9436 -6.5009 24 6 5.8595 7.9237 -3.2620 25 6 5.3771 6.5636 -2.7541 26 16 2.3500 2.3434 -1.4037 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 2.1453 4.8256 2.3188 33 1 3.3729 3.6724 2.8948 34 1 3.8247 4.9517 1.7425 35 1 3.1412 4.5544 -2.8489 36 1 3.5001 7.3344 -2.0299 37 1 2.1997 6.7902 -4.0699 38 1 3.6370 6.0162 -4.7795 39 1 3.3732 8.3366 -5.6129 40 1 3.4242 8.9431 -3.9405 41 1 5.6483 7.3884 -5.3379 42 1 5.2037 10.2594 -5.0400 43 1 6.9688 12.7456 -6.3928 44 1 6.9489 7.9329 -3.2981 45 1 5.5120 8.7072 -2.5886 46 1 5.7246 5.7801 -3.4275 47 1 5.7755 6.3866 -1.7551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026576100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:29 Heat of formation + Delta-G solvation = -7.433705 kcal Electronic energy + Delta-G solvation = -26347.889010 eV Core-core repulsion = 22656.554319 eV Total energy + Delta-G solvation = -3691.334691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.72037 -39.67982 -37.92508 -34.98238 -34.69486 -33.10941 -31.27912 -30.73058 -30.42192 -28.79892 -27.03331 -25.90726 -23.75487 -22.53437 -22.35880 -22.05230 -20.80113 -20.03410 -19.24935 -18.26724 -17.29504 -16.88133 -16.15609 -15.80175 -15.35331 -15.10753 -14.76512 -14.63587 -14.14100 -13.98680 -13.80088 -13.75631 -13.56940 -13.32697 -13.00896 -12.81844 -12.56656 -12.34393 -12.18766 -12.05811 -11.82998 -11.72733 -11.65785 -11.44036 -11.07687 -10.82103 -10.77565 -10.67294 -10.29873 -10.18602 -10.11713 -9.92890 -9.86993 -9.77110 -9.58622 -9.16615 -8.97502 -8.84726 -6.93258 -5.74653 -3.03125 -0.10816 0.78534 1.19251 2.12128 2.92517 2.97279 3.44291 3.49584 3.51275 3.53647 4.33059 4.53696 4.58131 4.60583 4.63211 4.77334 4.91016 5.01456 5.02626 5.25177 5.26206 5.36037 5.44848 5.50248 5.52128 5.58772 5.61533 5.65106 5.66407 5.70899 5.81815 5.86259 6.01076 6.08041 6.22044 6.23993 6.28618 6.46024 6.55309 6.62633 6.71981 6.98720 7.15270 7.21214 7.34194 7.71859 7.98670 8.44183 9.55127 10.13705 10.48245 11.48073 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.002025 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.509073 B =13823.723166 C =14136.057036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.068 3.932 4 N -0.477 5.477 5 C 0.150 3.850 6 C -0.091 4.091 7 C -0.298 4.298 8 C 0.596 3.404 9 O -0.519 6.519 10 N -0.719 5.719 11 C 0.146 3.854 12 C -0.119 4.119 13 C -0.120 4.120 14 C 0.177 3.823 15 N -0.725 5.725 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.132 4.132 25 C -0.124 4.124 26 S 0.154 5.846 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.394 0.606 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 -25.384 11.590 31.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.208 4.208 4 N -0.191 5.191 5 C 0.013 3.987 6 C -0.150 4.150 7 C -0.422 4.422 8 C 0.381 3.619 9 O -0.397 6.397 10 N -0.369 5.369 11 C 0.043 3.957 12 C -0.158 4.158 13 C -0.159 4.159 14 C 0.067 3.933 15 N -0.366 5.366 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.173 4.173 25 C -0.163 4.163 26 S 0.412 5.588 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.838 -25.204 11.440 30.946 hybrid contribution 0.866 0.517 -0.057 1.010 sum -12.973 -24.687 11.383 30.122 Atomic orbital electron populations 1.21789 0.93044 1.02916 1.02901 1.20333 0.97038 0.87083 1.04752 1.27429 1.00570 1.01767 0.91061 1.66088 1.15879 1.05925 1.31243 1.20704 0.93873 0.90371 0.93782 1.20690 1.03790 0.97023 0.93450 1.25522 1.18716 1.00753 0.97191 1.16652 0.77605 0.84853 0.82778 1.90808 1.49488 1.44613 1.54770 1.46081 1.67746 1.17149 1.05931 1.21192 0.94964 0.83674 0.95870 1.21761 1.00046 0.99313 0.94675 1.21750 0.97718 0.95130 1.01280 1.20241 0.90668 0.89857 0.92544 1.42427 1.20014 1.04475 1.69635 1.19239 0.94234 0.93786 1.29531 0.91236 1.24742 0.98586 0.95720 1.02045 1.69660 1.37362 0.98906 1.52240 0.86210 0.83899 0.76879 0.79332 1.21793 1.21812 1.20809 1.22226 1.01356 0.94290 0.99398 1.21909 0.93910 0.99416 1.01096 1.83818 1.58765 1.04539 1.11670 0.92208 0.91032 0.91789 0.89219 0.88342 0.90027 0.90751 0.87952 0.77187 0.89056 0.91805 0.91529 0.91278 0.91889 0.93596 0.78293 0.93558 0.91727 0.92411 0.92285 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.90 37.16 0.37 -0.26 16 2 C -0.05 -0.26 6.51 -27.88 -0.18 -0.44 16 3 C 0.07 0.56 6.64 -13.29 -0.09 0.48 16 4 N -0.48 -5.16 10.50 -7.70 -0.08 -5.24 16 5 C 0.15 1.75 6.79 -83.89 -0.57 1.18 16 6 C -0.09 -0.97 9.70 36.01 0.35 -0.62 16 7 C -0.30 -3.38 6.48 -37.10 -0.24 -3.62 16 8 C 0.60 7.82 7.74 -12.85 -0.10 7.72 16 9 O -0.52 -8.31 13.93 5.20 0.07 -8.24 16 10 N -0.72 -8.24 5.07 -55.11 -0.28 -8.52 16 11 C 0.15 1.93 2.46 -67.93 -0.17 1.77 16 12 C -0.12 -1.46 5.39 -26.73 -0.14 -1.61 16 13 C -0.12 -1.89 5.39 -26.73 -0.14 -2.03 16 14 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 15 N -0.73 -18.04 5.12 -53.43 -0.27 -18.31 16 16 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 20 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.13 -2.38 5.50 -26.73 -0.15 -2.53 16 25 C -0.12 -1.83 5.49 -26.73 -0.15 -1.98 16 26 S 0.15 1.23 22.31 -107.50 -2.40 -1.17 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.24 6.01 -51.93 -0.31 0.93 16 35 H 0.39 3.57 7.79 -40.82 -0.32 3.25 16 36 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.16 7.80 -40.82 -0.32 9.85 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -32.61 392.56 -10.64 -43.25 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -7.65 Total: 8.36 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -1.65 Total: -5.95 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.09 Total: -59.63 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.07 Total: -8.24 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.40 Total: -1.17 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.61 -10.64 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026576100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.814 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds