Wall clock time and date at job start Tue Mar 31 2020 20:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 120.00131 * 2 1 4 4 O 1.21628 * 120.00286 * 176.76747 * 3 2 1 5 5 C 1.47269 * 119.99922 * 356.76983 * 3 2 1 6 6 C 1.35204 * 123.14146 * 186.45011 * 5 3 2 7 7 S 1.70949 * 108.82758 * 179.97438 * 6 5 3 8 8 C 1.70768 * 91.12802 * 359.97438 * 7 6 5 9 9 C 1.50701 * 124.72108 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46882 * 240.02415 * 9 8 7 11 11 C 1.52998 * 109.46925 * 0.02562 * 9 8 7 12 12 C 1.52995 * 109.47452 * 120.02239 * 9 8 7 13 13 N 1.28653 * 110.55884 * 359.76577 * 8 7 6 14 14 C 1.46504 * 120.00084 * 180.02562 * 2 1 3 15 15 H 1.08995 * 110.63975 * 181.68836 * 14 2 1 16 16 C 1.55160 * 110.71688 * 305.02571 * 14 2 1 17 17 C 1.55120 * 101.49075 * 82.69535 * 16 14 2 18 18 N 1.47429 * 104.72050 * 37.29311 * 17 16 14 19 19 C 1.36936 * 125.64826 * 155.82080 * 18 17 16 20 20 H 1.08000 * 120.00301 * 185.53070 * 19 18 17 21 21 C 1.38818 * 119.99793 * 5.52564 * 19 18 17 22 22 N 1.31613 * 120.00092 * 5.55165 * 21 19 18 23 23 Si 1.86806 * 119.99826 * 185.54894 * 21 19 18 24 24 H 1.48505 * 109.47021 * 265.00237 * 23 21 19 25 25 H 1.48494 * 109.47030 * 25.00112 * 23 21 19 26 26 H 1.48494 * 109.47125 * 145.00254 * 23 21 19 27 27 C 1.47020 * 108.70418 * 335.55464 * 18 17 16 28 28 H 1.08998 * 109.47038 * 275.58148 * 1 2 3 29 29 H 1.08999 * 109.47072 * 35.58857 * 1 2 3 30 30 H 1.09005 * 109.47228 * 155.58381 * 1 2 3 31 31 H 1.08000 * 125.59180 * 359.96009 * 6 5 3 32 32 H 1.09002 * 109.47651 * 59.99504 * 10 9 8 33 33 H 1.09004 * 109.47306 * 179.97438 * 10 9 8 34 34 H 1.09007 * 109.47334 * 299.99367 * 10 9 8 35 35 H 1.09002 * 109.46774 * 60.00390 * 11 9 8 36 36 H 1.08998 * 109.47116 * 180.02562 * 11 9 8 37 37 H 1.08993 * 109.47751 * 300.00780 * 11 9 8 38 38 H 1.09003 * 109.47143 * 59.99852 * 12 9 8 39 39 H 1.08998 * 109.47158 * 180.02562 * 12 9 8 40 40 H 1.09002 * 109.46970 * 300.00053 * 12 9 8 41 41 H 1.09006 * 111.00204 * 200.93729 * 16 14 2 42 42 H 1.09004 * 111.00479 * 324.74407 * 16 14 2 43 43 H 1.09004 * 110.49731 * 278.45752 * 17 16 14 44 44 H 1.08998 * 110.34655 * 156.05804 * 17 16 14 45 45 H 0.97002 * 120.00343 * 180.02562 * 22 21 19 46 46 H 1.08994 * 109.88137 * 120.70375 * 27 18 17 47 47 H 1.09002 * 109.88132 * 241.87051 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3537 1.1680 0.0594 5 6 1.4043 2.4415 -0.0719 6 6 2.0153 3.6405 -0.2032 7 16 0.8233 4.8650 -0.2492 8 6 -0.4212 3.7064 -0.0913 9 6 -1.8929 4.0280 -0.0469 10 6 -2.4818 3.5400 1.2782 11 6 -2.0880 5.5408 -0.1654 12 6 -2.6028 3.3298 -1.2085 13 7 0.0721 2.5203 -0.0198 14 6 2.1976 -1.2688 -0.0006 15 1 3.2726 -1.0917 0.0296 16 6 1.7507 -2.1611 1.1875 17 6 0.4680 -2.8189 0.6145 18 7 0.7745 -3.0618 -0.8070 19 6 0.1811 -4.0063 -1.6013 20 1 0.5377 -4.1667 -2.6080 21 6 -0.8789 -4.7577 -1.1125 22 7 -1.3847 -4.4890 0.0725 23 14 -1.5873 -6.1501 -2.1366 24 1 -2.7566 -5.6534 -2.9058 25 1 -0.5521 -6.6492 -3.0769 26 1 -2.0166 -7.2542 -1.2413 27 6 1.8183 -2.1177 -1.2322 28 1 -0.3633 0.1000 1.0228 29 1 -0.3633 0.8357 -0.5981 30 1 -0.3634 -0.9358 -0.4248 31 1 3.0816 3.7988 -0.2682 32 1 -1.9760 4.0374 2.1058 33 1 -3.5461 3.7730 1.3105 34 1 -2.3428 2.4621 1.3626 35 1 -1.6684 5.8884 -1.1095 36 1 -3.1523 5.7735 -0.1329 37 1 -1.5822 6.0384 0.6619 38 1 -2.4638 2.2519 -1.1241 39 1 -3.6671 3.5628 -1.1766 40 1 -2.1832 3.6775 -2.1525 41 1 2.5076 -2.9103 1.4198 42 1 1.5199 -1.5568 2.0649 43 1 -0.3823 -2.1434 0.7091 44 1 0.2644 -3.7602 1.1249 45 1 -2.1251 -5.0143 0.4143 46 1 2.6909 -2.6654 -1.5879 47 1 1.4350 -1.4729 -2.0231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033503421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:19 Heat of formation + Delta-G solvation = 49.424993 kcal Electronic energy + Delta-G solvation = -28084.000804 eV Core-core repulsion = 24395.131691 eV Total energy + Delta-G solvation = -3688.869113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73883 -39.13724 -37.47217 -36.64051 -34.28824 -32.02774 -30.20003 -29.22048 -28.02739 -27.72689 -27.46261 -26.13123 -25.76549 -24.32551 -22.84783 -20.27346 -20.03126 -19.58532 -18.84364 -18.01946 -16.92988 -16.30679 -15.98316 -15.58818 -15.45945 -14.71841 -14.62601 -14.39790 -14.09581 -13.78288 -13.65848 -13.52772 -12.83986 -12.76000 -12.58238 -12.39696 -12.12937 -12.02813 -11.91540 -11.91203 -11.75350 -11.56618 -11.51406 -11.29981 -11.17092 -11.01352 -10.86411 -10.77826 -10.34146 -10.07536 -9.87444 -9.81654 -9.71382 -9.59221 -9.18585 -9.00483 -8.56791 -8.11274 -6.81386 -5.71037 -3.05621 0.44386 1.11051 1.51265 2.00815 3.34697 3.40217 3.45964 3.47815 3.48743 3.76322 4.43061 4.50362 4.60453 4.65472 4.93078 5.07604 5.20283 5.25558 5.33953 5.43763 5.49152 5.49771 5.52153 5.57444 5.60566 5.68254 5.71911 5.77016 5.84693 5.92445 6.01379 6.08874 6.13425 6.25517 6.34460 6.40766 6.59714 6.66768 6.69309 6.80185 7.08663 7.41342 7.54184 7.59980 7.78899 7.83901 8.28980 8.40979 9.21174 9.82038 10.48549 11.39138 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.003407 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.805326 B = 8216.119335 C = 9518.951793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.572 5.572 3 C 0.585 3.415 4 O -0.551 6.551 5 C 0.023 3.977 6 C -0.235 4.235 7 S 0.195 5.805 8 C 0.034 3.966 9 C 0.012 3.988 10 C -0.136 4.136 11 C -0.154 4.154 12 C -0.137 4.137 13 N -0.426 5.426 14 C 0.124 3.876 15 H 0.100 0.900 16 C -0.155 4.155 17 C 0.159 3.841 18 N -0.602 5.602 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.128 3.872 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.186 0.814 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.033 0.967 44 H 0.084 0.916 45 H 0.252 0.748 46 H 0.034 0.966 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 22.358 1.606 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.301 5.301 3 C 0.370 3.630 4 O -0.430 6.430 5 C -0.112 4.112 6 C -0.376 4.376 7 S 0.453 5.547 8 C -0.245 4.245 9 C 0.009 3.991 10 C -0.195 4.195 11 C -0.212 4.212 12 C -0.196 4.196 13 N -0.141 5.141 14 C 0.021 3.979 15 H 0.117 0.883 16 C -0.195 4.195 17 C 0.035 3.965 18 N -0.329 5.329 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.217 1.217 27 C 0.001 3.999 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.203 0.797 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.793 22.775 1.600 22.845 hybrid contribution 0.123 -1.619 -0.454 1.686 sum -0.670 21.156 1.146 21.197 Atomic orbital electron populations 1.22630 0.77695 1.05409 1.02216 1.47670 1.08291 1.04714 1.69425 1.17172 0.86174 0.82336 0.77338 1.90760 1.12881 1.86937 1.52405 1.20503 0.88408 0.95108 1.07177 1.26585 1.06798 0.96205 1.08058 1.82711 0.95595 1.11649 1.64699 1.27464 1.01473 0.91510 1.04053 1.19234 0.85346 0.96214 0.98352 1.21863 1.00465 1.02780 0.94354 1.22034 1.03389 0.93346 1.02453 1.21875 0.99825 1.01780 0.96122 1.67306 1.09875 1.22134 1.14755 1.22201 0.96404 0.82094 0.97244 0.88251 1.23384 1.01482 0.98302 0.96288 1.21861 0.90726 0.99633 0.84306 1.44532 1.42934 1.37704 1.07769 1.19049 1.10419 1.10174 0.95681 0.90606 1.24765 0.98006 1.00217 0.97356 1.69917 1.27215 1.41732 1.17945 0.86111 0.78892 0.81836 0.78986 1.21707 1.20687 1.21682 1.21626 0.92877 0.91324 0.94045 0.93347 0.88703 0.88436 0.79654 0.92575 0.91538 0.91006 0.91845 0.90561 0.91868 0.90966 0.91489 0.92513 0.90996 0.92007 0.94936 0.89838 0.93767 0.94864 0.95566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 7.74 59.85 0.46 1.61 16 2 N -0.57 -10.74 2.82 -173.15 -0.49 -11.23 16 3 C 0.58 10.74 7.65 -12.59 -0.10 10.64 16 4 O -0.55 -11.16 16.10 5.25 0.08 -11.07 16 5 C 0.02 0.35 6.50 -84.53 -0.55 -0.20 16 6 C -0.23 -2.92 10.62 29.65 0.31 -2.60 16 7 S 0.19 1.77 21.28 -107.50 -2.29 -0.51 16 8 C 0.03 0.38 5.74 -13.61 -0.08 0.30 16 9 C 0.01 0.11 0.99 -155.66 -0.15 -0.05 16 10 C -0.14 -1.17 8.45 37.16 0.31 -0.85 16 11 C -0.15 -0.93 7.53 37.16 0.28 -0.65 16 12 C -0.14 -1.22 8.44 37.16 0.31 -0.91 16 13 N -0.43 -5.96 6.70 -8.51 -0.06 -6.02 16 14 C 0.12 2.45 3.58 -66.09 -0.24 2.21 16 15 H 0.10 1.94 6.99 -51.93 -0.36 1.58 16 16 C -0.16 -3.09 6.54 -24.47 -0.16 -3.25 16 17 C 0.16 3.81 4.69 -2.41 -0.01 3.80 16 18 N -0.60 -15.31 2.98 -169.94 -0.51 -15.82 16 19 C -0.22 -6.23 10.26 -15.06 -0.15 -6.39 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.21 5.46 -17.43 -0.10 -0.30 16 22 N -0.92 -26.41 10.36 55.49 0.58 -25.84 16 23 Si 0.91 21.96 29.56 -169.99 -5.02 16.93 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.13 2.81 6.29 -3.06 -0.02 2.79 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.63 5.18 -51.93 -0.27 1.36 16 30 H 0.10 2.10 4.76 -51.93 -0.25 1.85 16 31 H 0.19 2.12 8.04 -52.49 -0.42 1.70 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.06 0.36 7.91 -51.93 -0.41 -0.05 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.35 7.91 -51.93 -0.41 -0.06 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.03 0.81 5.51 -51.93 -0.29 0.53 16 44 H 0.08 2.25 6.46 -51.93 -0.34 1.92 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.03 0.59 8.04 -51.93 -0.42 0.18 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -31.34 378.14 -9.23 -40.57 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.36 Total: 1.14 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 0.13 Total: 6.14 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.48 Total: -58.90 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.29 Total: -0.51 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.34 -9.23 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033503421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.999 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds