Wall clock time and date at job start Tue Mar 31 2020 19:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50691 * 109.47192 * 2 1 4 4 N 1.29438 * 124.80417 * 90.02480 * 3 2 1 5 5 C 1.30940 * 117.36258 * 179.97438 * 4 3 2 6 6 C 1.50698 * 122.90059 * 180.02562 * 5 4 3 7 7 C 1.35661 * 114.19453 * 0.02562 * 5 4 3 8 8 C 1.46677 * 126.13361 * 179.73860 * 7 5 4 9 9 O 1.21687 * 119.99768 * 311.55411 * 8 7 5 10 10 N 1.34776 * 120.00671 * 131.54875 * 8 7 5 11 11 C 1.46930 * 120.62723 * 3.94537 * 10 8 7 12 12 C 1.52760 * 109.00596 * 233.58411 * 11 10 8 13 13 C 1.53033 * 109.38599 * 305.58709 * 12 11 10 14 14 H 1.09003 * 109.46148 * 301.22519 * 13 12 11 15 15 N 1.46502 * 109.46298 * 181.26391 * 13 12 11 16 16 C 1.36937 * 119.99928 * 84.93094 * 15 13 12 17 17 H 1.08004 * 120.00155 * 0.02562 * 16 15 13 18 18 C 1.38809 * 119.99623 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00465 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99802 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47418 * 90.00117 * 20 18 16 22 22 H 1.48499 * 109.47219 * 210.00198 * 20 18 16 23 23 H 1.48504 * 109.47159 * 330.00061 * 20 18 16 24 24 C 1.53039 * 109.53684 * 61.24006 * 13 12 11 25 25 H 1.09003 * 109.49768 * 58.59141 * 24 13 12 26 26 C 1.53004 * 109.49643 * 178.68432 * 24 13 12 27 27 C 1.46923 * 120.63512 * 184.22245 * 10 8 7 28 28 S 1.70951 * 124.80594 * 269.99857 * 3 2 1 29 29 H 1.08997 * 109.47088 * 300.00140 * 1 2 3 30 30 H 1.09004 * 109.46801 * 59.99735 * 1 2 3 31 31 H 1.08998 * 109.46852 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46612 * 240.00043 * 2 1 3 33 33 H 1.09004 * 109.46801 * 120.00265 * 2 1 3 34 34 H 1.09001 * 109.47444 * 269.96023 * 6 5 4 35 35 H 1.08998 * 109.47497 * 29.96614 * 6 5 4 36 36 H 1.09010 * 109.46988 * 149.96364 * 6 5 4 37 37 H 1.09001 * 109.58307 * 353.41794 * 11 10 8 38 38 H 1.08992 * 109.58889 * 113.84034 * 11 10 8 39 39 H 1.09007 * 109.56216 * 185.54939 * 12 11 10 40 40 H 1.08998 * 109.36283 * 65.49832 * 12 11 10 41 41 H 0.96993 * 119.99609 * 264.93061 * 15 13 12 42 42 H 0.96997 * 119.99893 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47138 * 179.83981 * 26 24 13 44 44 H 1.08994 * 109.47288 * 299.84074 * 26 24 13 45 45 H 1.09007 * 109.47131 * 59.84264 * 26 24 13 46 46 H 1.08990 * 109.58943 * 246.15714 * 27 10 8 47 47 H 1.09005 * 109.58627 * 6.58330 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2791 2.1171 1.0628 5 6 2.7123 3.3411 0.8932 6 6 3.0386 4.2604 2.0418 7 6 2.8421 3.7100 -0.4058 8 6 3.2985 5.0162 -0.8925 9 8 2.8193 6.0371 -0.4355 10 7 4.2487 5.0858 -1.8458 11 6 4.7752 3.8636 -2.4686 12 6 6.2983 3.8622 -2.3520 13 6 6.8542 5.1593 -2.9439 14 1 6.5511 5.2414 -3.9877 15 7 8.3168 5.1465 -2.8603 16 6 9.0533 4.5362 -3.8402 17 1 8.5560 4.0647 -4.6750 18 6 10.4391 4.5246 -3.7612 19 7 11.0452 5.0996 -2.7442 20 14 11.4439 3.6927 -5.0983 21 1 11.7609 4.6770 -6.1641 22 1 12.7060 3.1698 -4.5162 23 1 10.6635 2.5699 -5.6777 24 6 6.3091 6.3548 -2.1593 25 1 6.5910 6.2608 -1.1105 26 6 6.8912 7.6492 -2.7310 27 6 4.7821 6.3849 -2.2778 28 16 2.3577 2.3407 -1.4037 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.1487 4.8256 2.3190 35 1 3.3750 3.6711 2.8948 36 1 3.8282 4.9498 1.7425 37 1 4.3701 2.9898 -1.9581 38 1 4.4920 3.8385 -3.5208 39 1 6.7053 3.0100 -2.8964 40 1 6.5802 3.7916 -1.3015 41 1 8.7634 5.5703 -2.1108 42 1 12.0136 5.0918 -2.6893 43 1 6.5005 8.5006 -2.1737 44 1 7.9777 7.6274 -2.6466 45 1 6.6101 7.7417 -3.7801 46 1 4.4995 6.5696 -3.3141 47 1 4.3817 7.1741 -1.6414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036215471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:29 Heat of formation + Delta-G solvation = 9.513951 kcal Electronic energy + Delta-G solvation = -27470.334670 eV Core-core repulsion = 23779.734885 eV Total energy + Delta-G solvation = -3690.599786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.63764 -39.65039 -37.65711 -34.71281 -34.59502 -32.93845 -31.56729 -31.10617 -29.47340 -28.70189 -26.28314 -25.75398 -24.95328 -22.98631 -22.20503 -21.79313 -21.31074 -19.64799 -18.56814 -18.20067 -17.14371 -16.92928 -16.15048 -15.64391 -15.01628 -14.89792 -14.71869 -14.48795 -14.18079 -13.92738 -13.81371 -13.56382 -13.37281 -13.29207 -12.95284 -12.57981 -12.48574 -12.39919 -12.21180 -12.04363 -11.81990 -11.67781 -11.57293 -11.53302 -11.22555 -10.97135 -10.85547 -10.70358 -10.46823 -10.23028 -10.18957 -9.83144 -9.79897 -9.67068 -9.42694 -8.96830 -8.84768 -8.56324 -7.00241 -5.80849 -3.09790 0.16178 0.92450 1.35334 2.35387 2.76752 3.10585 3.39868 3.45148 3.46946 3.70393 4.45299 4.50181 4.54391 4.72943 4.79424 4.92792 5.00985 5.16057 5.19359 5.22066 5.30618 5.40553 5.47568 5.50593 5.52932 5.54366 5.56251 5.64289 5.69312 5.73836 5.78167 5.89249 6.02820 6.08357 6.10526 6.26128 6.32096 6.38940 6.46109 6.56939 6.75788 6.87660 7.00086 7.32493 7.47434 7.65168 8.04317 8.37214 9.48766 10.05695 10.40694 11.41576 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.003082 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.133514 B = 9081.409477 C =10183.826108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.051 3.949 4 N -0.473 5.473 5 C 0.136 3.864 6 C -0.080 4.080 7 C -0.289 4.289 8 C 0.597 3.403 9 O -0.529 6.529 10 N -0.596 5.596 11 C 0.097 3.903 12 C -0.150 4.150 13 C 0.184 3.816 14 H 0.049 0.951 15 N -0.720 5.720 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.110 4.110 25 H 0.070 0.930 26 C -0.135 4.135 27 C 0.122 3.878 28 S 0.176 5.824 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.070 0.930 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.786 -6.764 4.174 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.224 4.224 4 N -0.187 5.187 5 C -0.001 4.001 6 C -0.139 4.139 7 C -0.412 4.412 8 C 0.382 3.618 9 O -0.408 6.408 10 N -0.328 5.328 11 C -0.027 4.027 12 C -0.191 4.191 13 C 0.074 3.926 14 H 0.067 0.933 15 N -0.360 5.360 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.130 4.130 25 H 0.088 0.912 26 C -0.193 4.193 27 C 0.000 4.000 28 S 0.434 5.566 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.104 -6.777 3.645 22.463 hybrid contribution 1.092 0.006 0.171 1.105 sum -20.011 -6.771 3.816 21.468 Atomic orbital electron populations 1.21782 0.93270 1.02736 1.02795 1.20295 0.96854 0.87229 1.04689 1.27458 1.01389 1.01919 0.91670 1.66027 1.15559 1.05743 1.31412 1.20489 0.95595 0.90751 0.93280 1.20434 1.02838 0.96662 0.93982 1.25389 1.17967 1.00574 0.97297 1.16750 0.79457 0.86421 0.79162 1.90810 1.56976 1.34871 1.58115 1.48054 1.37949 1.08741 1.38028 1.22085 0.96685 0.85979 0.97921 1.22604 0.91497 1.02578 1.02428 1.20188 0.85856 0.90193 0.96372 0.93318 1.42399 0.98810 1.67071 1.27708 1.19206 0.88589 1.28142 1.01057 0.91228 1.24731 0.96569 1.01370 0.98154 1.69657 1.08470 1.48995 1.30852 0.86226 0.79925 0.79025 0.81204 1.21747 1.21837 1.20792 1.21757 0.92943 0.97303 1.01041 0.91155 1.21656 1.02732 0.94921 1.00027 1.21785 0.93925 0.84064 1.00254 1.83993 1.57962 1.03538 1.11111 0.91859 0.92315 0.91163 0.89288 0.88436 0.89784 0.90328 0.90318 0.90571 0.90973 0.90347 0.92180 0.78188 0.93494 0.93741 0.90660 0.92987 0.91204 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.51 16 2 C -0.05 -0.35 6.51 -27.88 -0.18 -0.53 16 3 C 0.05 0.54 6.64 -13.29 -0.09 0.45 16 4 N -0.47 -6.07 10.50 -7.71 -0.08 -6.15 16 5 C 0.14 1.84 6.79 -83.90 -0.57 1.27 16 6 C -0.08 -0.97 9.75 36.00 0.35 -0.62 16 7 C -0.29 -3.99 5.37 -37.10 -0.20 -4.18 16 8 C 0.60 9.22 6.90 -12.85 -0.09 9.13 16 9 O -0.53 -9.38 15.92 5.20 0.08 -9.30 16 10 N -0.60 -8.69 2.98 -174.58 -0.52 -9.21 16 11 C 0.10 1.33 5.94 -3.93 -0.02 1.31 16 12 C -0.15 -2.51 5.64 -26.84 -0.15 -2.66 16 13 C 0.18 3.42 2.19 -67.89 -0.15 3.27 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -16.98 4.41 -53.39 -0.24 -17.22 16 16 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 17 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 20 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.11 -1.79 2.46 -90.50 -0.22 -2.01 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 C -0.14 -2.15 9.02 37.16 0.34 -1.82 16 27 C 0.12 1.76 5.71 -3.71 -0.02 1.73 16 28 S 0.18 1.87 20.32 -107.50 -2.18 -0.31 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.01 7.47 -51.92 -0.39 0.63 16 37 H 0.08 0.97 4.22 -35.34 -0.15 0.82 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.38 9.82 7.50 -40.82 -0.31 9.52 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 45 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.33 7.03 -51.93 -0.36 0.97 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -31.28 388.10 -9.75 -41.03 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.47 Total: 7.25 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.89 Total: -2.04 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.11 Total: -59.27 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.18 Total: -0.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.28 -9.75 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036215471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.545 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds