Wall clock time and date at job start Tue Mar 31 2020 19:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47426 * 2 1 4 4 N 1.29037 * 124.91037 * 90.28197 * 3 2 1 5 5 C 1.31787 * 117.11805 * 180.22616 * 4 3 2 6 6 C 1.50694 * 122.74799 * 179.74998 * 5 4 3 7 7 C 1.50703 * 109.47184 * 304.71149 * 6 5 4 8 8 O 1.21284 * 120.00179 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00212 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00177 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.48795 * 325.04187 * 10 9 7 12 12 C 1.52574 * 109.48946 * 205.00256 * 10 9 7 13 13 C 1.47090 * 114.32878 * 155.02030 * 12 10 9 14 14 C 1.54863 * 110.32333 * 62.79757 * 13 12 10 15 15 N 1.44580 * 109.60023 * 288.73741 * 14 13 12 16 16 C 1.36937 * 118.64360 * 270.71863 * 15 14 13 17 17 H 1.08002 * 119.99524 * 26.48116 * 16 15 14 18 18 C 1.38810 * 120.00159 * 206.47379 * 16 15 14 19 19 N 1.31624 * 119.99919 * 15.65235 * 18 16 15 20 20 Si 1.86794 * 120.00150 * 195.65038 * 18 16 15 21 21 H 1.48504 * 109.47222 * 60.00106 * 20 18 16 22 22 H 1.48497 * 109.47505 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46972 * 300.00316 * 20 18 16 24 24 C 1.47609 * 122.71032 * 90.70361 * 15 14 13 25 25 C 1.50878 * 109.49305 * 85.11677 * 10 9 7 26 26 C 1.33635 * 114.50078 * 359.48247 * 5 4 3 27 27 S 1.70970 * 124.91837 * 269.97557 * 3 2 1 28 28 H 1.08992 * 109.47420 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46683 * 300.00122 * 1 2 3 30 30 H 1.08998 * 109.46927 * 59.99451 * 1 2 3 31 31 H 1.09001 * 109.46683 * 239.99878 * 2 1 3 32 32 H 1.08998 * 109.46927 * 120.00549 * 2 1 3 33 33 H 1.08997 * 109.47351 * 64.70979 * 6 5 4 34 34 H 1.09001 * 109.47577 * 184.71226 * 6 5 4 35 35 H 0.97001 * 119.99785 * 359.97438 * 9 7 6 36 36 H 1.08998 * 108.50892 * 276.27546 * 12 10 9 37 37 H 1.09007 * 108.51067 * 33.76302 * 12 10 9 38 38 H 1.08995 * 109.33172 * 183.06488 * 13 12 10 39 39 H 1.09005 * 109.32595 * 302.71354 * 13 12 10 40 40 H 1.09005 * 109.44501 * 48.77514 * 14 13 12 41 41 H 1.08996 * 109.45021 * 168.72455 * 14 13 12 42 42 H 0.96993 * 119.99615 * 179.97438 * 19 18 16 43 43 H 1.08998 * 108.94747 * 78.57867 * 24 15 14 44 44 H 1.09000 * 108.94143 * 197.28577 * 24 15 14 45 45 H 1.09003 * 109.36082 * 332.03996 * 25 10 9 46 46 H 1.08995 * 109.36441 * 91.65501 * 25 10 9 47 47 H 1.08004 * 126.03478 * 180.26742 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2835 2.1152 1.0582 5 6 2.7136 3.3481 0.8795 6 6 3.0397 4.2717 2.0247 7 6 1.8444 4.3838 2.9357 8 8 0.8280 3.7733 2.6804 9 7 1.9053 5.1615 4.0347 10 6 0.7435 5.2700 4.9206 11 1 -0.1705 5.2300 4.3281 12 6 0.8021 6.5937 5.6771 13 6 -0.5060 7.0919 6.1289 14 6 -1.1396 6.1018 7.1372 15 7 -1.5628 4.9065 6.4425 16 6 -2.8284 4.8634 5.9214 17 1 -3.3285 5.7789 5.6415 18 6 -3.4684 3.6433 5.7527 19 7 -3.0101 2.5701 6.3615 20 14 -4.9801 3.5245 4.6619 21 1 -4.6272 3.9384 3.2801 22 1 -5.4723 2.1235 4.6490 23 1 -6.0429 4.4172 5.1899 24 6 -0.6867 3.7308 6.2716 25 6 0.7547 4.1290 5.9076 26 6 2.8423 3.7102 -0.4004 27 16 2.3593 2.3432 -1.4019 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8863 3.8727 2.5835 34 1 3.2935 5.2577 1.6355 35 1 2.7186 5.6489 4.2395 36 1 1.4437 6.4659 6.5489 37 1 1.2527 7.3441 5.0273 38 1 -0.3766 8.0620 6.6086 39 1 -1.1674 7.1999 5.2692 40 1 -0.4046 5.8386 7.8979 41 1 -2.0019 6.5696 7.6121 42 1 -3.4576 1.7176 6.2439 43 1 -0.6725 3.1620 7.2013 44 1 -1.0899 3.1015 5.4782 45 1 1.2652 3.2735 5.4653 46 1 1.2838 4.4365 6.8096 47 1 3.1822 4.6710 -0.7578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052953805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:28 Heat of formation + Delta-G solvation = 22.671622 kcal Electronic energy + Delta-G solvation = -27709.300575 eV Core-core repulsion = 24019.271349 eV Total energy + Delta-G solvation = -3690.029226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.28978 -39.18173 -37.45432 -34.58496 -34.28024 -32.79548 -31.52471 -30.73430 -30.16838 -28.12306 -25.89175 -25.36778 -23.88116 -23.19707 -22.05217 -20.30903 -20.06949 -19.64093 -19.13429 -17.74979 -16.66089 -16.52908 -15.97305 -15.39163 -15.04308 -14.84637 -14.60266 -14.35914 -14.20843 -13.71614 -13.68547 -13.31763 -13.11312 -12.98273 -12.78363 -12.47292 -12.32210 -12.17432 -11.84024 -11.69426 -11.49697 -11.37538 -11.15563 -11.00530 -10.78701 -10.68885 -10.34271 -10.14738 -9.99143 -9.86174 -9.62015 -9.57274 -9.50539 -9.44307 -9.31664 -8.73931 -8.57924 -8.24683 -6.55105 -5.65802 -3.09478 0.67821 1.32547 1.67437 2.75197 3.04749 3.47329 3.53062 3.56044 3.61261 3.96798 4.61744 4.66676 4.93659 4.99638 5.08893 5.14958 5.17366 5.25726 5.28826 5.36837 5.47438 5.56338 5.61619 5.65977 5.75974 5.82297 5.92066 6.07787 6.09152 6.20045 6.25669 6.27852 6.39912 6.51512 6.56019 6.68753 6.79087 6.87784 6.91783 7.09383 7.17053 7.56856 7.80878 7.83960 7.91056 7.95779 8.59944 8.67571 9.36334 10.03634 10.47920 11.41724 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.003757 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.871016 B = 7451.608797 C = 9234.248276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.046 4.046 3 C 0.061 3.939 4 N -0.442 5.442 5 C 0.095 3.905 6 C -0.068 4.068 7 C 0.509 3.491 8 O -0.507 6.507 9 N -0.732 5.732 10 C 0.156 3.844 11 H 0.101 0.899 12 C -0.105 4.105 13 C -0.146 4.146 14 C 0.157 3.843 15 N -0.591 5.591 16 C -0.260 4.260 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.902 5.902 20 Si 0.898 3.102 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.184 3.816 25 C -0.146 4.146 26 C -0.263 4.263 27 S 0.098 5.902 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.389 0.611 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.045 0.955 42 H 0.253 0.747 43 H 0.024 0.976 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.704 2.046 -12.456 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.087 4.087 3 C -0.218 4.218 4 N -0.155 5.155 5 C -0.038 4.038 6 C -0.111 4.111 7 C 0.293 3.707 8 O -0.380 6.380 9 N -0.384 5.384 10 C 0.053 3.947 11 H 0.118 0.882 12 C -0.143 4.143 13 C -0.187 4.187 14 C 0.029 3.971 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.728 3.272 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.058 3.942 25 C -0.186 4.186 26 C -0.402 4.402 27 S 0.353 5.647 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.222 0.778 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 15.742 0.956 -13.202 20.567 hybrid contribution -0.083 0.855 0.191 0.880 sum 15.659 1.811 -13.011 20.439 Atomic orbital electron populations 1.21781 0.93165 1.02544 1.03283 1.20224 0.97077 0.87431 1.03920 1.27095 1.02619 1.01738 0.90346 1.66000 1.12806 1.05620 1.31069 1.19573 0.99884 0.91314 0.93001 1.20262 0.98483 0.98694 0.93645 1.20168 0.89260 0.79790 0.81524 1.90817 1.31701 1.43031 1.72465 1.46289 1.17257 1.49133 1.25706 1.20479 0.88604 0.94574 0.91054 0.88150 1.20560 0.99032 0.95774 0.98973 1.21454 0.96464 0.98901 1.01860 1.20688 0.96642 0.87941 0.91877 1.43665 1.11665 1.12803 1.63081 1.19118 0.91683 0.92692 1.35514 0.91901 1.24985 0.97883 0.96701 0.99437 1.70044 1.41823 0.99702 1.43079 0.86439 0.82907 0.76626 0.81219 1.21036 1.21668 1.21003 1.20918 0.84725 0.88438 1.00084 1.22423 1.01391 0.97549 0.97229 1.26689 1.13462 1.04323 0.95680 1.83795 1.61074 1.06223 1.13587 0.91441 0.91140 0.92585 0.89951 0.88722 0.87489 0.87676 0.77785 0.92899 0.93531 0.93089 0.92000 0.95032 0.93639 0.93709 0.95797 0.90426 0.92578 0.93773 0.80737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.90 37.16 0.37 -1.37 16 2 C -0.05 -0.49 6.52 -27.88 -0.18 -0.68 16 3 C 0.06 0.82 6.64 -13.45 -0.09 0.73 16 4 N -0.44 -7.10 9.70 -8.06 -0.08 -7.18 16 5 C 0.10 1.32 5.63 -84.23 -0.47 0.85 16 6 C -0.07 -0.80 6.19 -29.04 -0.18 -0.98 16 7 C 0.51 8.40 7.62 -10.98 -0.08 8.32 16 8 O -0.51 -11.32 15.12 5.55 0.08 -11.23 16 9 N -0.73 -10.78 4.93 -55.06 -0.27 -11.05 16 10 C 0.16 2.88 2.06 -69.21 -0.14 2.73 16 11 H 0.10 2.36 6.92 -51.93 -0.36 2.00 16 12 C -0.11 -1.66 4.69 -29.79 -0.14 -1.80 16 13 C -0.15 -2.57 5.74 -28.58 -0.16 -2.73 16 14 C 0.16 3.29 5.66 -4.08 -0.02 3.27 16 15 N -0.59 -15.05 2.27 -172.11 -0.39 -15.44 16 16 C -0.26 -7.37 9.44 -15.06 -0.14 -7.51 16 17 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.01 0.25 4.87 -17.43 -0.08 0.17 16 19 N -0.90 -27.31 11.01 55.49 0.61 -26.70 16 20 Si 0.90 22.99 29.58 -169.99 -5.03 17.97 16 21 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.18 4.65 4.66 -2.96 -0.01 4.64 16 25 C -0.15 -2.95 5.38 -27.32 -0.15 -3.10 16 26 C -0.26 -3.00 11.07 29.12 0.32 -2.68 16 27 S 0.10 1.07 23.18 -107.50 -2.49 -1.42 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 0.85 8.03 -51.93 -0.42 0.43 16 35 H 0.39 4.14 8.60 -40.82 -0.35 3.79 16 36 H 0.05 0.77 7.36 -51.93 -0.38 0.39 16 37 H 0.05 0.63 8.04 -51.92 -0.42 0.21 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 41 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.02 0.65 8.03 -51.93 -0.42 0.23 16 44 H 0.08 2.28 6.33 -51.93 -0.33 1.95 16 45 H 0.06 1.17 7.85 -51.93 -0.41 0.76 16 46 H 0.04 0.81 7.32 -51.93 -0.38 0.43 16 47 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -35.40 387.09 -10.56 -45.96 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.65 Total: 3.39 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.18 Total: -0.13 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.13 Total: -60.37 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.97 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.49 Total: -1.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.40 -10.56 -45.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052953805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.627 kcal (2) G-P(sol) polarization free energy of solvation -35.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds