Wall clock time and date at job start Tue Mar 31 2020 20:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47064 * 2 1 4 4 C 1.53007 * 109.46801 * 240.00334 * 2 1 3 5 5 C 1.50691 * 109.47392 * 120.00369 * 2 1 3 6 6 N 1.29438 * 124.80535 * 60.02411 * 5 2 1 7 7 C 1.30936 * 117.36552 * 179.97438 * 6 5 2 8 8 C 1.35669 * 114.19319 * 359.97438 * 7 6 5 9 9 C 1.46679 * 126.13040 * 180.02562 * 8 7 6 10 10 O 1.21691 * 119.99976 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00055 * 0.02867 * 9 8 7 12 12 C 1.46498 * 119.99598 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46726 * 180.19486 * 12 11 9 14 14 N 1.46500 * 112.85087 * 292.09825 * 13 12 11 15 15 C 1.36936 * 119.99823 * 294.87114 * 14 13 12 16 16 H 1.07997 * 120.00263 * 353.75800 * 15 14 13 17 17 C 1.38816 * 119.99839 * 173.76726 * 15 14 13 18 18 N 1.31615 * 119.99693 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99842 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46867 * 60.00141 * 19 17 15 21 21 H 1.48501 * 109.47081 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47603 * 300.00336 * 19 17 15 23 23 C 1.53782 * 113.61405 * 160.79391 * 13 12 11 24 24 C 1.53781 * 87.08357 * 220.01683 * 23 13 12 25 25 C 1.53777 * 113.61838 * 63.29905 * 13 12 11 26 26 S 1.70954 * 124.80807 * 240.30149 * 5 2 1 27 27 H 1.09002 * 109.46564 * 299.99808 * 1 2 3 28 28 H 1.09002 * 109.47322 * 59.99432 * 1 2 3 29 29 H 1.08992 * 109.47351 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46674 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47522 * 300.00305 * 3 2 1 32 32 H 1.08994 * 109.46958 * 60.00549 * 3 2 1 33 33 H 1.08995 * 109.47088 * 299.99623 * 4 2 1 34 34 H 1.09002 * 109.46992 * 60.00031 * 4 2 1 35 35 H 1.09002 * 109.46877 * 179.97438 * 4 2 1 36 36 H 1.07998 * 122.90580 * 179.97438 * 7 6 5 37 37 H 0.96999 * 120.00207 * 0.02562 * 11 9 8 38 38 H 1.09007 * 109.46914 * 300.18601 * 12 11 9 39 39 H 1.08997 * 109.47840 * 60.19421 * 12 11 9 40 40 H 0.96999 * 120.00067 * 114.86548 * 14 13 12 41 41 H 0.97002 * 119.99473 * 180.02562 * 18 17 15 42 42 H 1.09005 * 113.61426 * 334.56496 * 23 13 12 43 43 H 1.08996 * 113.61791 * 105.46985 * 23 13 12 44 44 H 1.09004 * 113.61509 * 270.88629 * 24 23 13 45 45 H 1.09003 * 113.61409 * 139.97933 * 24 23 13 46 46 H 1.09003 * 113.61165 * 254.53382 * 25 13 12 47 47 H 1.09007 * 113.61609 * 25.42523 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7104 1.2303 6 7 1.7780 -1.9445 1.5265 7 6 2.2912 -2.4155 2.6352 8 6 3.0343 -1.5174 3.3293 9 6 3.7259 -1.7645 4.5990 10 8 4.3644 -0.8736 5.1275 11 7 3.6543 -2.9784 5.1803 12 6 4.3446 -3.2250 6.4487 13 6 4.1080 -4.6722 6.8851 14 7 2.7156 -4.9335 7.2581 15 6 2.1705 -4.3106 8.3490 16 1 2.7926 -3.7063 8.9926 17 6 0.8184 -4.4561 8.6277 18 7 0.0605 -5.1931 7.8437 19 14 0.0751 -3.6069 10.1162 20 1 0.2599 -2.1386 9.9921 21 1 -1.3750 -3.9182 10.1908 22 1 0.7492 -4.0881 11.3487 23 6 5.1295 -5.1794 7.9167 24 6 5.1199 -6.5143 7.1532 25 6 4.6910 -5.7119 5.9135 26 16 3.0133 0.0013 2.4360 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 2.1362 -3.4310 2.9684 37 1 3.1457 -3.6888 4.7588 38 1 5.4135 -3.0546 6.3197 39 1 3.9580 -2.5480 7.2105 40 1 2.1797 -5.5477 6.7322 41 1 -0.8844 -5.2944 8.0383 42 1 6.0868 -4.6596 7.8752 43 1 4.7296 -5.2520 8.9280 44 1 4.3609 -7.2131 7.5051 45 1 6.1054 -6.9703 7.0587 46 1 3.9369 -6.2142 5.3076 47 1 5.5283 -5.3376 5.3243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700142802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:01 Heat of formation + Delta-G solvation = 26.652619 kcal Electronic energy + Delta-G solvation = -26972.255160 eV Core-core repulsion = 23282.398562 eV Total energy + Delta-G solvation = -3689.856597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.22004 -39.38478 -38.37351 -36.82970 -33.99771 -33.29008 -30.61892 -29.89922 -27.76576 -27.54631 -27.14946 -25.77970 -25.31784 -23.83891 -22.22849 -21.64219 -20.67286 -19.21481 -18.22237 -17.81630 -17.16024 -17.00550 -15.62742 -15.34742 -15.08835 -15.01695 -14.60549 -14.58263 -14.41988 -14.07749 -13.80420 -13.68012 -13.38092 -13.25225 -12.73154 -12.60963 -12.47638 -12.09551 -11.98690 -11.88269 -11.80239 -11.46262 -11.33196 -11.28986 -11.24633 -11.03017 -10.85298 -10.39477 -10.29947 -10.21638 -10.04208 -9.74700 -9.53679 -9.45860 -9.43826 -8.98155 -8.90723 -8.55765 -7.07381 -5.84704 -3.14770 0.27247 1.14072 1.68001 2.51266 3.40397 3.41423 3.46049 3.47102 3.60626 3.78382 4.43158 4.52030 4.56831 4.68701 4.98895 5.04407 5.15241 5.20309 5.23062 5.24668 5.30646 5.31888 5.41665 5.44151 5.49473 5.54044 5.59110 5.61859 5.75191 5.75360 5.91247 5.99184 6.00454 6.08711 6.10582 6.16470 6.29814 6.35168 6.48624 6.66919 6.82661 6.92624 7.01231 7.58388 7.67404 7.82682 8.33882 8.46548 9.45278 9.98113 10.33426 11.37127 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.003083 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.052271 B = 9078.540815 C =10063.279235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.010 3.990 3 C -0.157 4.157 4 C -0.134 4.134 5 C 0.045 3.955 6 N -0.472 5.472 7 C 0.092 3.908 8 C -0.289 4.289 9 C 0.588 3.412 10 O -0.549 6.549 11 N -0.690 5.690 12 C 0.121 3.879 13 C 0.173 3.827 14 N -0.699 5.699 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.007 4.007 18 N -0.930 5.930 19 Si 0.904 3.096 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.150 4.150 24 C -0.128 4.128 25 C -0.146 4.146 26 S 0.219 5.781 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.181 0.819 37 H 0.401 0.599 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 7.578 -17.508 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.006 3.994 3 C -0.215 4.215 4 C -0.192 4.192 5 C -0.229 4.229 6 N -0.186 5.186 7 C -0.065 4.065 8 C -0.413 4.413 9 C 0.372 3.628 10 O -0.429 6.429 11 N -0.338 5.338 12 C -0.005 4.005 13 C 0.080 3.920 14 N -0.340 5.340 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.735 3.265 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.190 4.190 24 C -0.165 4.165 25 C -0.183 4.183 26 S 0.478 5.522 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.198 0.802 37 H 0.236 0.764 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.741 9.016 -17.160 20.523 hybrid contribution -1.161 -1.092 0.970 1.866 sum 5.580 7.925 -16.189 18.869 Atomic orbital electron populations 1.21853 0.92035 1.03335 1.02178 1.19262 0.96787 0.93924 0.89431 1.22057 1.01799 0.94266 1.03372 1.21841 1.01155 1.01162 0.95083 1.27545 1.00339 0.93861 1.01197 1.65999 1.23199 1.11838 1.17555 1.22200 0.93767 1.01100 0.89469 1.25929 1.11852 0.99230 1.04339 1.16697 0.80369 0.83220 0.82474 1.90806 1.43345 1.43754 1.64951 1.45535 1.52215 1.11901 1.24180 1.21960 0.94801 0.99570 0.84179 1.20821 0.87365 0.89844 0.93974 1.42059 1.05935 1.52863 1.33123 1.19048 0.91679 1.24217 1.01980 0.91166 1.24722 0.96183 1.00386 0.99018 1.69638 1.05853 1.43065 1.39194 0.86315 0.78183 0.79389 0.82599 1.21207 1.21704 1.21185 1.23308 0.98647 0.96687 1.00373 1.22629 1.00321 0.96786 0.96797 1.23159 1.00307 0.98212 0.96670 1.83927 1.44352 1.11384 1.12499 0.92352 0.91568 0.91238 0.91706 0.90526 0.91655 0.91286 0.91582 0.92473 0.80177 0.76422 0.92418 0.90965 0.77890 0.93414 0.91269 0.90655 0.90000 0.92693 0.91622 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.45 37.16 0.31 -0.83 16 2 C 0.01 0.09 0.99 -155.66 -0.15 -0.07 16 3 C -0.16 -1.09 7.53 37.16 0.28 -0.81 16 4 C -0.13 -1.04 8.45 37.16 0.31 -0.73 16 5 C 0.05 0.55 5.78 -13.29 -0.08 0.47 16 6 N -0.47 -6.52 10.49 -11.50 -0.12 -6.64 16 7 C 0.09 1.32 10.93 -18.85 -0.21 1.12 16 8 C -0.29 -4.50 6.48 -37.09 -0.24 -4.74 16 9 C 0.59 10.66 7.79 -12.85 -0.10 10.56 16 10 O -0.55 -11.52 16.97 5.20 0.09 -11.44 16 11 N -0.69 -11.92 5.41 -61.62 -0.33 -12.25 16 12 C 0.12 2.21 5.08 -4.04 -0.02 2.19 16 13 C 0.17 3.14 0.80 -131.01 -0.11 3.03 16 14 N -0.70 -15.87 5.19 -46.48 -0.24 -16.11 16 15 C -0.24 -6.22 9.05 -15.06 -0.14 -6.36 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 18 N -0.93 -26.85 13.07 55.49 0.73 -26.12 16 19 Si 0.90 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.15 -2.51 7.28 -25.92 -0.19 -2.70 16 24 C -0.13 -1.95 7.99 -25.92 -0.21 -2.15 16 25 C -0.15 -2.18 7.04 -25.92 -0.18 -2.36 16 26 S 0.22 2.83 21.39 -107.50 -2.30 0.53 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.47 7.91 -51.93 -0.41 0.06 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.18 2.30 7.15 -52.49 -0.38 1.93 16 37 H 0.40 6.41 7.01 -40.82 -0.29 6.12 16 38 H 0.06 0.98 8.01 -51.93 -0.42 0.57 16 39 H 0.07 1.54 7.80 -51.93 -0.41 1.14 16 40 H 0.39 9.35 7.87 -40.82 -0.32 9.03 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 43 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 47 H 0.08 1.04 8.10 -51.92 -0.42 0.62 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -31.08 397.69 -9.66 -40.74 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.64 Total: 11.82 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.81 Total: -3.66 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.03 Total: -61.12 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.30 Total: 0.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.08 -9.66 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700142802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.388 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds