Wall clock time and date at job start Tue Mar 31 2020 20:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46903 * 2 1 4 4 C 1.50699 * 109.47057 * 120.00090 * 2 1 3 5 5 N 1.29424 * 124.80671 * 299.97695 * 4 2 1 6 6 C 1.30945 * 117.35960 * 179.77097 * 5 4 2 7 7 C 1.35661 * 114.19220 * 0.45033 * 6 5 4 8 8 C 1.46686 * 126.12505 * 179.85023 * 7 6 5 9 9 O 1.21693 * 119.99585 * 179.69181 * 8 7 6 10 10 N 1.34777 * 120.00342 * 359.42024 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27605 * 10 8 7 12 12 H 1.08998 * 110.01607 * 34.29498 * 11 10 8 13 13 C 1.53869 * 110.02741 * 272.90283 * 11 10 8 14 14 C 1.54264 * 106.60080 * 240.71587 * 13 11 10 15 15 C 1.54893 * 104.19443 * 23.61267 * 14 13 11 16 16 H 1.08998 * 110.75170 * 80.36958 * 15 14 13 17 17 C 1.52996 * 110.75721 * 203.56243 * 15 14 13 18 18 N 1.46506 * 109.46801 * 293.54586 * 17 15 14 19 19 C 1.36943 * 119.99639 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00468 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99478 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99643 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00183 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47134 * 89.99651 * 23 21 19 25 25 H 1.48498 * 109.46866 * 209.99642 * 23 21 19 26 26 H 1.48503 * 109.47002 * 329.99752 * 23 21 19 27 27 C 1.54264 * 110.02920 * 155.68584 * 11 10 8 28 28 S 1.70952 * 124.80082 * 120.00028 * 4 2 1 29 29 H 1.09000 * 109.47076 * 299.99340 * 1 2 3 30 30 H 1.08996 * 109.47449 * 59.99768 * 1 2 3 31 31 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46619 * 240.00384 * 2 1 3 33 33 H 1.08995 * 109.47174 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47519 * 300.00824 * 3 2 1 35 35 H 1.09009 * 109.46847 * 60.00204 * 3 2 1 36 36 H 1.08002 * 122.89974 * 180.30486 * 6 5 4 37 37 H 0.97000 * 119.99736 * 0.26879 * 10 8 7 38 38 H 1.08993 * 110.04044 * 0.02562 * 13 11 10 39 39 H 1.09008 * 110.03291 * 121.38298 * 13 11 10 40 40 H 1.09000 * 110.48953 * 142.28951 * 14 13 11 41 41 H 1.09006 * 110.48747 * 264.80340 * 14 13 11 42 42 H 1.09001 * 109.47686 * 53.54249 * 17 15 14 43 43 H 1.09004 * 109.47309 * 173.54805 * 17 15 14 44 44 H 0.96995 * 120.00087 * 359.97438 * 18 17 15 45 45 H 0.96997 * 120.00143 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.48670 * 214.34791 * 27 11 10 47 47 H 1.09000 * 110.48926 * 336.99665 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7780 -0.3500 2.4472 6 6 2.2869 -1.0780 3.4093 7 6 3.0336 -2.1254 2.9785 8 6 3.7240 -3.1024 3.8273 9 8 4.3619 -4.0060 3.3198 10 7 3.6564 -2.9962 5.1692 11 6 4.3510 -3.9686 6.0168 12 1 5.2791 -4.2835 5.5398 13 6 3.4475 -5.1883 6.2687 14 6 3.2281 -5.2667 7.7937 15 6 3.4722 -3.8191 8.2875 16 1 2.5904 -3.2004 8.1210 17 6 3.8675 -3.8097 9.7655 18 7 2.7347 -4.2624 10.5768 19 6 2.8544 -4.3362 11.9390 20 1 3.7836 -4.0604 12.4152 21 6 1.7809 -4.7647 12.7078 22 7 1.8961 -4.8361 14.0169 23 14 0.1734 -5.2411 11.8841 24 1 0.1958 -6.6891 11.5553 25 1 -0.9570 -4.9601 12.8052 26 1 0.0036 -4.4529 10.6371 27 6 4.6503 -3.3478 7.3969 28 16 3.0193 -2.1062 1.2166 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 2.1279 -0.8617 4.4555 37 1 3.1480 -2.2760 5.5736 38 1 2.4925 -5.0571 5.7601 39 1 3.9371 -6.0953 5.9141 40 1 2.2078 -5.5789 8.0168 41 1 3.9437 -5.9525 8.2473 42 1 4.7147 -4.4782 9.9193 43 1 4.1448 -2.7979 10.0611 44 1 1.8998 -4.5091 10.1492 45 1 1.1461 -5.1358 14.5541 46 1 5.5969 -3.7222 7.7865 47 1 4.6675 -2.2599 7.3303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700909263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:30 Heat of formation + Delta-G solvation = -0.131016 kcal Electronic energy + Delta-G solvation = -25986.766192 eV Core-core repulsion = 22295.748169 eV Total energy + Delta-G solvation = -3691.018023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67625 -39.79956 -38.09856 -35.92636 -35.01415 -33.49959 -31.47226 -30.46849 -29.09990 -27.86183 -27.68221 -26.37223 -24.55202 -23.15406 -21.97993 -21.82093 -20.30395 -19.88232 -19.63944 -18.54646 -17.58004 -17.38961 -16.40237 -15.67414 -15.63309 -15.14515 -14.81967 -14.75106 -14.62284 -14.45779 -14.19736 -13.99075 -13.43283 -13.32632 -13.30938 -12.64472 -12.62132 -12.39748 -12.21780 -12.01612 -11.96008 -11.74539 -11.67105 -11.55303 -11.25570 -10.98785 -10.89830 -10.58434 -10.54674 -10.43406 -10.36578 -10.05911 -9.90389 -9.87361 -9.58948 -9.43151 -9.21738 -8.89159 -7.22172 -5.76766 -3.11794 -0.16462 0.72656 1.25449 2.06483 2.87581 2.95118 3.36425 3.39182 3.44644 3.51599 4.22510 4.34606 4.48827 4.51588 4.57783 4.58954 4.59657 4.79008 4.87300 4.91340 5.15024 5.23925 5.30777 5.32450 5.39912 5.42367 5.50250 5.52503 5.53910 5.59733 5.71074 5.71297 5.75188 5.80353 5.87882 5.96620 5.97944 6.15771 6.31219 6.40191 6.46416 6.67604 6.80024 7.15281 7.19582 7.86346 8.00031 8.42554 9.22038 9.94470 10.14568 11.41789 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002107 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.390232 B =13284.955167 C =14090.215430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.048 3.952 5 N -0.473 5.473 6 C 0.096 3.904 7 C -0.298 4.298 8 C 0.594 3.406 9 O -0.536 6.536 10 N -0.708 5.708 11 C 0.143 3.857 12 H 0.092 0.908 13 C -0.133 4.133 14 C -0.115 4.115 15 C -0.103 4.103 16 H 0.074 0.926 17 C 0.165 3.835 18 N -0.755 5.755 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.122 4.122 28 S 0.223 5.777 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.181 0.819 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.086 0.914 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 10.197 -32.383 33.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 C -0.199 4.199 4 C -0.226 4.226 5 N -0.187 5.187 6 C -0.063 4.063 7 C -0.423 4.423 8 C 0.379 3.621 9 O -0.414 6.414 10 N -0.359 5.359 11 C 0.039 3.961 12 H 0.110 0.890 13 C -0.172 4.172 14 C -0.153 4.153 15 C -0.121 4.121 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.401 5.401 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.583 5.583 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.161 4.161 28 S 0.483 5.517 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.198 0.802 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.934 9.365 -33.257 34.604 hybrid contribution -1.669 0.132 0.862 1.883 sum 0.265 9.497 -32.395 33.759 Atomic orbital electron populations 1.21820 0.92448 1.02561 1.03158 1.19918 0.97241 0.96296 0.90679 1.21817 1.01231 0.93746 1.03154 1.27631 0.99696 0.98025 0.97255 1.66034 1.23572 1.30575 0.98477 1.22208 0.93758 0.90033 1.00285 1.25786 1.12538 1.05705 0.98251 1.16709 0.79962 0.83324 0.82073 1.90850 1.42342 1.34338 1.73919 1.45971 1.53114 1.31938 1.04909 1.21738 0.95641 0.88321 0.90442 0.88980 1.22607 0.99660 0.97628 0.97304 1.22384 1.02330 0.97157 0.93440 1.22406 0.97504 0.96362 0.95870 0.90793 1.20616 0.91045 0.97332 0.87240 1.42693 1.11638 1.81481 1.04259 1.19071 0.99825 1.37438 0.80943 0.89259 1.24680 0.97790 1.01609 0.95217 1.69700 1.31506 1.53603 1.03474 0.86544 0.84845 0.78533 0.78582 1.21080 1.21763 1.20407 1.22691 0.99960 1.00576 0.92862 1.84103 1.43616 1.23705 1.00259 0.91230 0.91375 0.92416 0.89085 0.92427 0.91377 0.91243 0.80189 0.76398 0.91629 0.91176 0.91608 0.90819 0.95357 0.95648 0.80697 0.93089 0.89527 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.17 37.16 0.34 -0.38 16 2 C -0.02 -0.10 3.35 -91.77 -0.31 -0.41 16 3 C -0.14 -0.70 9.17 37.16 0.34 -0.35 16 4 C 0.05 0.39 5.90 -13.29 -0.08 0.31 16 5 N -0.47 -4.47 10.49 -11.50 -0.12 -4.59 16 6 C 0.10 0.86 10.93 -18.85 -0.21 0.65 16 7 C -0.30 -3.03 6.48 -37.09 -0.24 -3.27 16 8 C 0.59 7.07 7.78 -12.85 -0.10 6.97 16 9 O -0.54 -8.16 16.63 5.20 0.09 -8.07 16 10 N -0.71 -7.11 4.92 -54.03 -0.27 -7.37 16 11 C 0.14 1.57 3.23 -66.81 -0.22 1.35 16 12 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 13 C -0.13 -1.60 6.59 -25.62 -0.17 -1.77 16 14 C -0.12 -1.59 5.97 -25.07 -0.15 -1.74 16 15 C -0.10 -1.42 2.96 -88.56 -0.26 -1.69 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 17 C 0.16 3.04 5.71 -4.04 -0.02 3.01 16 18 N -0.76 -17.66 5.25 -59.90 -0.31 -17.98 16 19 C -0.24 -6.87 10.48 -15.05 -0.16 -7.03 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 23 Si 0.88 22.15 27.74 -169.99 -4.71 17.43 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.51 6.52 56.52 0.37 -6.15 16 27 C -0.12 -1.33 5.89 -25.00 -0.15 -1.47 16 28 S 0.22 1.94 23.00 -107.50 -2.47 -0.53 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.35 8.12 -51.93 -0.42 -0.08 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.18 1.18 7.15 -52.49 -0.38 0.81 16 37 H 0.40 3.15 7.28 -40.82 -0.30 2.85 16 38 H 0.06 0.81 7.92 -51.93 -0.41 0.39 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 42 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.36 8.24 5.39 -40.82 -0.22 8.02 16 45 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 47 H 0.07 0.70 7.98 -51.93 -0.41 0.29 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -34.36 395.22 -10.15 -44.51 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.61 Total: 5.16 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.47 Total: -5.83 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.07 Total: -58.63 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.47 Total: -0.53 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.36 -10.15 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700909263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.381 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds