Wall clock time and date at job start Tue Mar 31 2020 19:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46564 * 2 1 4 4 N 1.29435 * 124.80688 * 89.97797 * 3 2 1 5 5 C 1.30938 * 117.36397 * 180.02562 * 4 3 2 6 6 C 1.35655 * 114.19558 * 359.97438 * 5 4 3 7 7 C 1.46677 * 126.13145 * 180.02562 * 6 5 4 8 8 O 1.21685 * 120.00366 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00262 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00276 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46761 * 35.00601 * 10 9 7 12 12 C 1.52996 * 109.47119 * 275.00139 * 10 9 7 13 13 C 1.53001 * 109.47238 * 299.99906 * 12 10 9 14 14 C 1.53007 * 109.46923 * 300.00062 * 13 12 10 15 15 C 1.53003 * 109.46963 * 60.00343 * 14 13 12 16 16 C 1.53001 * 109.47020 * 299.99597 * 15 14 13 17 17 H 1.09008 * 109.46939 * 300.00621 * 16 15 14 18 18 C 1.52996 * 109.47238 * 180.02562 * 16 15 14 19 19 N 1.46498 * 109.47059 * 64.99625 * 18 16 15 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31611 * 120.00081 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47483 * 90.00178 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00042 * 24 22 20 27 27 H 1.48502 * 109.47495 * 329.99664 * 24 22 20 28 28 S 1.70959 * 124.80644 * 270.32772 * 3 2 1 29 29 H 1.09002 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47522 * 299.99724 * 1 2 3 31 31 H 1.09002 * 109.47466 * 60.00400 * 1 2 3 32 32 H 1.08992 * 109.47298 * 240.00279 * 2 1 3 33 33 H 1.08993 * 109.47035 * 119.99197 * 2 1 3 34 34 H 1.08007 * 122.90157 * 180.02562 * 5 4 3 35 35 H 0.97002 * 119.99865 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.46613 * 179.97438 * 12 10 9 37 37 H 1.09001 * 109.46987 * 60.00124 * 12 10 9 38 38 H 1.09001 * 109.46786 * 180.02562 * 13 12 10 39 39 H 1.08994 * 109.47016 * 59.99904 * 13 12 10 40 40 H 1.08994 * 109.47145 * 299.99763 * 14 13 12 41 41 H 1.08997 * 109.46534 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.46736 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47226 * 59.99434 * 15 14 13 44 44 H 1.09004 * 109.47066 * 304.99893 * 18 16 15 45 45 H 1.08994 * 109.46974 * 185.00040 * 18 16 15 46 46 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 47 47 H 0.97008 * 120.00329 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2780 2.1176 1.0628 5 6 2.7103 3.3419 0.8931 6 6 2.8411 3.7104 -0.4058 7 6 3.3024 5.0149 -0.8925 8 8 3.6104 5.8857 -0.1003 9 7 3.3853 5.2491 -2.2173 10 6 3.8455 6.5522 -2.7034 11 1 4.6085 6.9425 -2.0297 12 6 2.6646 7.5237 -2.7541 13 6 1.5938 6.9759 -3.6996 14 6 2.1845 6.8174 -5.1021 15 6 3.3654 5.8459 -5.0514 16 6 4.4363 6.3937 -4.1058 17 1 4.7787 7.3634 -4.4675 18 6 5.6174 5.4225 -4.0555 19 7 6.2568 5.3626 -5.3722 20 6 7.3472 4.5576 -5.5678 21 1 7.7329 3.9634 -4.7526 22 6 7.9566 4.5052 -6.8139 23 7 9.0042 3.7311 -7.0021 24 14 7.2897 5.5334 -8.2237 25 1 7.9579 6.8596 -8.2285 26 1 7.5551 4.8409 -9.5102 27 1 5.8260 5.7172 -8.0533 28 16 2.3498 2.3436 -1.4037 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.9433 4.0011 1.7163 35 1 3.1402 4.5549 -2.8488 36 1 3.0072 8.4934 -3.1154 37 1 2.2438 7.6366 -1.7549 38 1 0.7527 7.6682 -3.7361 39 1 1.2514 6.0063 -3.3380 40 1 2.5269 7.7870 -5.4638 41 1 1.4217 6.4267 -5.7756 42 1 3.7859 5.7327 -6.0506 43 1 3.0229 4.8764 -4.6897 44 1 5.2604 4.4303 -3.7795 45 1 6.3400 5.7673 -3.3159 46 1 5.9105 5.8965 -6.1043 47 1 9.4299 3.6942 -7.8730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754350864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:12 Heat of formation + Delta-G solvation = -1.725926 kcal Electronic energy + Delta-G solvation = -27247.606545 eV Core-core repulsion = 23556.519361 eV Total energy + Delta-G solvation = -3691.087183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61231 -39.86852 -38.14756 -34.88590 -34.37598 -33.79813 -32.01206 -30.73462 -30.11171 -29.31424 -26.39908 -25.48120 -23.51701 -22.91359 -22.41928 -21.94574 -20.75528 -19.85109 -19.23404 -18.53426 -17.73496 -17.02487 -16.05065 -15.69814 -15.18568 -15.08770 -14.93832 -14.72819 -14.43783 -14.27625 -14.07947 -13.88882 -13.73307 -13.50125 -12.99601 -12.82476 -12.69507 -12.34514 -12.19419 -12.15448 -11.87846 -11.77135 -11.64285 -11.59623 -11.13322 -11.03331 -10.84238 -10.54071 -10.33962 -10.26553 -10.08079 -10.00011 -9.91828 -9.75517 -9.59764 -9.21608 -9.03110 -8.90679 -7.25574 -5.78834 -3.14551 0.00153 0.90010 1.32129 2.24712 3.00622 3.08127 3.33460 3.36667 3.42592 3.72646 4.50145 4.56059 4.56571 4.69796 4.73996 4.75733 4.76971 4.80227 5.02667 5.07583 5.17515 5.19876 5.39388 5.43893 5.45115 5.49717 5.51790 5.52828 5.59969 5.66498 5.71740 5.75011 5.85289 5.92338 6.01357 6.05089 6.11375 6.19842 6.31865 6.39647 6.45056 6.65437 6.70714 7.28377 7.40555 7.97425 8.03397 8.39941 9.18992 9.91063 10.10905 11.39651 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011150 B = 0.003320 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.687445 B = 8430.712419 C = 9613.943807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.060 3.940 4 N -0.479 5.479 5 C 0.119 3.881 6 C -0.291 4.291 7 C 0.598 3.402 8 O -0.528 6.528 9 N -0.709 5.709 10 C 0.156 3.844 11 H 0.094 0.906 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.107 4.107 17 H 0.088 0.912 18 C 0.164 3.836 19 N -0.754 5.754 20 C -0.244 4.244 21 H 0.089 0.911 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 S 0.171 5.829 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.188 0.812 35 H 0.399 0.601 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.028 0.972 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.369 -1.716 11.437 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.215 4.215 4 N -0.193 5.193 5 C -0.039 4.039 6 C -0.415 4.415 7 C 0.382 3.618 8 O -0.407 6.407 9 N -0.361 5.361 10 C 0.052 3.948 11 H 0.112 0.888 12 C -0.167 4.167 13 C -0.154 4.154 14 C -0.159 4.159 15 C -0.151 4.151 16 C -0.126 4.126 17 H 0.106 0.894 18 C 0.036 3.964 19 N -0.400 5.400 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 S 0.428 5.572 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.205 0.795 35 H 0.235 0.765 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.115 -1.717 11.428 24.070 hybrid contribution -0.131 0.887 -0.700 1.138 sum -21.246 -0.830 10.728 23.815 Atomic orbital electron populations 1.21786 0.93146 1.02872 1.02794 1.20332 0.96939 0.87172 1.04878 1.27542 1.00821 1.01981 0.91109 1.66218 1.15753 1.06101 1.31187 1.22168 0.94945 0.91249 0.95515 1.25815 1.17283 1.00559 0.97891 1.16680 0.77551 0.84792 0.82747 1.90829 1.49591 1.45005 1.55233 1.46022 1.67320 1.16805 1.05933 1.21010 0.96090 0.82191 0.95555 0.88830 1.21918 0.96091 0.98699 1.00040 1.21498 0.97689 1.00965 0.95260 1.21595 0.97714 1.00047 0.96527 1.21573 0.94919 0.98002 1.00650 1.21705 0.96154 1.01436 0.93332 0.89367 1.20623 0.91414 0.95637 0.88697 1.42702 1.35636 1.54042 1.07581 1.19053 1.03088 1.17989 0.97243 0.89319 1.24669 0.97642 0.99508 0.97305 1.69701 1.23050 1.42138 1.23302 0.86556 0.78470 0.80418 0.83081 1.21090 1.21746 1.20340 1.84053 1.57509 1.04313 1.11304 0.91081 0.91847 0.92249 0.89115 0.88326 0.79525 0.76512 0.90750 0.91476 0.92226 0.92323 0.91819 0.92101 0.90694 0.92471 0.95749 0.95426 0.80617 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.05 -0.34 6.51 -27.88 -0.18 -0.53 16 3 C 0.06 0.59 6.64 -13.29 -0.09 0.50 16 4 N -0.48 -5.58 10.51 -11.50 -0.12 -5.70 16 5 C 0.12 1.43 11.09 -18.86 -0.21 1.22 16 6 C -0.29 -3.57 6.48 -37.10 -0.24 -3.81 16 7 C 0.60 8.30 7.75 -12.85 -0.10 8.20 16 8 O -0.53 -8.75 16.53 5.20 0.09 -8.66 16 9 N -0.71 -8.95 3.61 -55.11 -0.20 -9.15 16 10 C 0.16 2.01 2.23 -67.93 -0.15 1.86 16 11 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 12 C -0.13 -1.42 5.60 -26.73 -0.15 -1.57 16 13 C -0.12 -1.16 5.77 -26.73 -0.15 -1.31 16 14 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 15 C -0.11 -1.48 4.90 -26.73 -0.13 -1.61 16 16 C -0.11 -1.52 2.02 -90.62 -0.18 -1.70 16 17 H 0.09 1.25 8.14 -51.92 -0.42 0.82 16 18 C 0.16 3.06 5.42 -4.04 -0.02 3.04 16 19 N -0.75 -17.38 5.13 -59.91 -0.31 -17.69 16 20 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 23 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 24 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 28 S 0.17 1.68 22.31 -107.50 -2.40 -0.72 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.19 2.06 8.06 -52.48 -0.42 1.63 16 35 H 0.40 4.67 5.85 -40.82 -0.24 4.43 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.13 7.18 -51.93 -0.37 0.76 16 43 H 0.06 0.71 6.50 -51.93 -0.34 0.37 16 44 H 0.02 0.46 7.61 -51.93 -0.40 0.07 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.36 8.04 4.71 -40.82 -0.19 7.85 16 47 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -33.27 385.91 -10.13 -43.40 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.41 Total: 8.69 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.65 Total: -4.57 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.15 Total: -61.00 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.40 Total: -0.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.27 -10.13 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754350864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.677 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds