Wall clock time and date at job start Tue Mar 31 2020 19:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46884 * 2 1 4 4 N 1.46899 * 109.47152 * 119.99368 * 2 1 3 5 5 C 1.46906 * 110.99674 * 173.61957 * 4 2 1 6 6 C 1.50703 * 109.47219 * 288.32954 * 5 4 2 7 7 O 1.21293 * 119.99927 * 356.89106 * 6 5 4 8 8 N 1.34770 * 120.00150 * 176.88917 * 6 5 4 9 9 C 1.37100 * 120.00424 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99270 * 359.97438 * 9 8 6 11 11 C 1.38943 * 120.00008 * 179.97438 * 9 8 6 12 12 N 1.31408 * 120.00519 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99911 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46893 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47252 * 119.99832 * 13 11 9 16 16 H 1.48500 * 109.47267 * 240.00296 * 13 11 9 17 17 C 1.46890 * 111.00444 * 297.57705 * 4 2 1 18 18 C 1.50698 * 109.47311 * 83.49750 * 17 4 2 19 19 O 1.21290 * 119.99851 * 7.59393 * 18 17 4 20 20 N 1.34775 * 119.99907 * 187.59511 * 18 17 4 21 21 C 1.40030 * 119.99864 * 185.51200 * 20 18 17 22 22 C 1.38850 * 120.04757 * 35.46317 * 21 20 18 23 23 C 1.38115 * 119.95632 * 180.21288 * 22 21 20 24 24 C 1.38477 * 120.04453 * 359.52089 * 23 22 21 25 25 F 1.35096 * 119.95517 * 180.25379 * 24 23 22 26 26 C 1.38477 * 120.08807 * 0.23068 * 24 23 22 27 27 C 1.38112 * 120.04669 * 359.97438 * 26 24 23 28 28 H 1.08994 * 109.47197 * 304.20127 * 1 2 3 29 29 H 1.08994 * 109.47468 * 64.20676 * 1 2 3 30 30 H 1.09000 * 109.46679 * 184.20588 * 1 2 3 31 31 H 1.08992 * 109.47279 * 240.00166 * 2 1 3 32 32 H 1.09001 * 109.47096 * 179.49220 * 3 2 1 33 33 H 1.09007 * 109.46871 * 299.49318 * 3 2 1 34 34 H 1.08999 * 109.47184 * 59.48936 * 3 2 1 35 35 H 1.08998 * 109.47190 * 48.33138 * 5 4 2 36 36 H 1.09001 * 109.46858 * 168.33598 * 5 4 2 37 37 H 0.97007 * 119.99624 * 0.02562 * 8 6 5 38 38 H 0.96998 * 120.00516 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47038 * 323.49781 * 17 4 2 40 40 H 1.09003 * 109.47193 * 203.49919 * 17 4 2 41 41 H 0.97003 * 120.00259 * 5.50505 * 20 18 17 42 42 H 1.07998 * 120.02595 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.97926 * 179.79553 * 23 22 21 44 44 H 1.08004 * 119.97447 * 180.02562 * 26 24 23 45 45 H 1.07996 * 120.02476 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4802 -0.8453 1.1596 6 6 3.8493 -1.8758 0.1237 7 8 2.9794 -2.4691 -0.4783 8 7 5.1459 -2.1381 -0.1337 9 6 5.4818 -3.0751 -1.0765 10 1 4.7071 -3.6034 -1.6125 11 6 6.8185 -3.3451 -1.3423 12 7 7.7610 -2.7019 -0.6904 13 14 7.2761 -4.6223 -2.6263 14 1 6.0399 -5.1998 -3.2124 15 1 8.0799 -3.9812 -3.6978 16 1 8.0721 -5.7019 -1.9889 17 6 1.5967 0.0064 2.4203 18 6 0.1970 -0.4185 2.7830 19 8 -0.3387 -1.3221 2.1767 20 7 -0.4593 0.2056 3.7811 21 6 -1.7124 -0.2626 4.1952 22 6 -1.9800 -1.6250 4.1957 23 6 -3.2180 -2.0845 4.6004 24 6 -4.1887 -1.1881 5.0149 25 9 -5.3973 -1.6399 5.4153 26 6 -3.9220 0.1707 5.0201 27 6 -2.6867 0.6346 4.6122 28 1 -0.3633 0.5776 0.8499 29 1 -0.3634 0.4471 -0.9252 30 1 -0.3633 -1.0249 0.0754 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0091 33 1 1.6840 1.9537 -0.8946 34 1 1.6692 1.9590 0.8854 35 1 3.9386 0.1094 0.9019 36 1 3.8385 -1.1683 2.1371 37 1 5.8416 -1.6638 0.3480 38 1 8.6943 -2.8901 -0.8762 39 1 1.6166 1.0826 2.2484 40 1 2.2752 -0.2438 3.2359 41 1 -0.0637 0.9791 4.2126 42 1 -1.2218 -2.3249 3.8770 43 1 -3.4278 -3.1440 4.5978 44 1 -4.6803 0.8682 5.3442 45 1 -2.4790 1.6943 4.6167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066532684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:09 Heat of formation + Delta-G solvation = -65.277024 kcal Electronic energy + Delta-G solvation = -28931.078142 eV Core-core repulsion = 24671.022000 eV Total energy + Delta-G solvation = -4260.056142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.06376 -40.81481 -39.23240 -38.18979 -36.81390 -34.74787 -33.84166 -31.85815 -31.42202 -31.14818 -30.03410 -28.25436 -26.95552 -25.65439 -23.89724 -23.56210 -22.73313 -20.97651 -19.81854 -18.91468 -18.14941 -17.84048 -17.61616 -17.20077 -16.64537 -16.11461 -15.91430 -15.75413 -15.04773 -14.75857 -14.58909 -14.40265 -14.21185 -13.86576 -13.77702 -13.53950 -13.43183 -13.25465 -12.97506 -12.96956 -12.71942 -12.43827 -12.25035 -11.82528 -11.51316 -11.45238 -11.35902 -11.14726 -11.06262 -10.87766 -10.42584 -10.34139 -10.31739 -10.20163 -9.78110 -9.45907 -9.36376 -8.44706 -8.27139 -7.94159 -7.84674 -6.39588 -3.79865 0.82052 0.95864 2.53125 2.71329 3.17915 3.28421 3.36051 3.38134 3.93106 3.95328 4.05235 4.24715 4.42984 4.56373 4.65390 4.90424 4.93385 4.99781 5.08726 5.13671 5.20938 5.27887 5.30425 5.37633 5.53191 5.59678 5.61504 5.78864 5.79709 5.82868 5.93665 5.97611 5.99501 6.03781 6.17732 6.21455 6.28149 6.52848 6.67040 6.76404 7.07207 7.25763 7.35788 7.57932 8.09424 8.10887 8.65062 9.21567 9.57460 10.10075 10.78407 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.002188 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.149239 B =12795.523407 C =13344.803902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.078 3.922 3 C -0.191 4.191 4 N -0.489 5.489 5 C 0.043 3.957 6 C 0.445 3.555 7 O -0.569 6.569 8 N -0.568 5.568 9 C -0.295 4.295 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.904 5.904 13 Si 0.928 3.072 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.028 3.972 18 C 0.510 3.490 19 O -0.478 6.478 20 N -0.685 5.685 21 C 0.149 3.851 22 C -0.092 4.092 23 C -0.131 4.131 24 C 0.075 3.925 25 F -0.143 7.143 26 C -0.135 4.135 27 C -0.122 4.122 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.391 0.609 38 H 0.270 0.730 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.409 0.591 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.956 12.445 13.594 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 C -0.250 4.250 4 N -0.212 5.212 5 C -0.088 4.088 6 C 0.230 3.770 7 O -0.452 6.452 8 N -0.205 5.205 9 C -0.424 4.424 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.546 5.546 13 Si 0.755 3.245 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.103 4.103 18 C 0.297 3.703 19 O -0.348 6.348 20 N -0.333 5.333 21 C 0.054 3.946 22 C -0.112 4.112 23 C -0.150 4.150 24 C 0.055 3.945 25 F -0.122 7.122 26 C -0.154 4.154 27 C -0.143 4.143 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.244 0.756 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.892 10.828 12.670 23.730 hybrid contribution 1.180 0.898 0.050 1.484 sum -15.712 11.726 12.720 23.370 Atomic orbital electron populations 1.21984 0.94314 1.03422 0.99438 1.21827 0.95716 0.91126 0.94347 1.22553 1.01822 0.98852 1.01778 1.61366 1.10749 1.49186 0.99896 1.21984 0.87342 0.98813 1.00661 1.19690 0.83535 0.86953 0.86824 1.90548 1.48248 1.53322 1.53077 1.41863 1.05222 1.36968 1.36473 1.19736 0.92324 1.15482 1.14892 0.87900 1.25235 0.95361 0.98708 0.98741 1.69613 1.00526 1.42312 1.42114 0.85821 0.78665 0.80005 0.79994 1.19226 1.20834 1.20799 1.22074 0.93526 0.98715 0.96032 1.20937 0.88139 0.82762 0.78471 1.90765 1.67170 1.28077 1.48807 1.43700 1.18036 1.34131 1.37408 1.17751 0.86035 0.92640 0.98175 1.21079 0.97344 0.94494 0.98270 1.21077 0.92916 1.00320 1.00722 1.17685 0.81645 0.92730 1.02395 1.91488 1.42361 1.89799 1.88514 1.20893 0.97948 0.93821 1.02731 1.20741 0.91773 0.99396 1.02372 0.94528 0.93466 0.89859 0.87751 0.92150 0.91877 0.92928 0.92733 0.89356 0.77613 0.92021 0.90848 0.87828 0.75551 0.83697 0.84399 0.84547 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 7.64 37.16 0.28 -1.73 16 2 C 0.08 1.23 2.65 -67.71 -0.18 1.05 16 3 C -0.19 -2.34 8.62 37.16 0.32 -2.02 16 4 N -0.49 -7.81 3.67 -229.52 -0.84 -8.66 16 5 C 0.04 0.72 5.32 -4.97 -0.03 0.70 16 6 C 0.45 10.34 7.40 -10.99 -0.08 10.26 16 7 O -0.57 -15.48 14.57 5.55 0.08 -15.40 16 8 N -0.57 -14.17 5.29 -10.97 -0.06 -14.23 16 9 C -0.29 -8.18 9.68 -14.93 -0.14 -8.33 16 10 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 11 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 12 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 13 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.03 0.31 5.16 -4.98 -0.03 0.29 16 18 C 0.51 6.15 5.56 -10.99 -0.06 6.08 16 19 O -0.48 -7.81 11.28 5.55 0.06 -7.75 16 20 N -0.68 -5.86 5.34 -9.85 -0.05 -5.91 16 21 C 0.15 1.44 6.24 -83.66 -0.52 0.92 16 22 C -0.09 -1.03 8.65 -39.40 -0.34 -1.37 16 23 C -0.13 -1.35 10.02 -39.54 -0.40 -1.75 16 24 C 0.08 0.75 7.30 -39.41 -0.29 0.47 16 25 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 26 C -0.13 -1.11 10.02 -39.54 -0.40 -1.50 16 27 C -0.12 -0.95 9.96 -39.40 -0.39 -1.34 16 28 H 0.04 0.49 5.92 -51.93 -0.31 0.18 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.51 6.67 -51.93 -0.35 1.17 16 31 H 0.10 2.06 6.43 -51.93 -0.33 1.73 16 32 H 0.06 0.76 6.33 -51.93 -0.33 0.43 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.52 5.96 -51.93 -0.31 0.21 16 35 H 0.05 0.81 6.04 -51.93 -0.31 0.49 16 36 H 0.09 1.30 7.63 -51.93 -0.40 0.91 16 37 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 39 H 0.07 0.64 5.35 -51.93 -0.28 0.36 16 40 H 0.10 0.94 7.51 -51.93 -0.39 0.55 16 41 H 0.41 1.99 8.83 -40.82 -0.36 1.63 16 42 H 0.15 1.85 6.59 -52.49 -0.35 1.51 16 43 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 45 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -34.04 368.14 -7.52 -41.56 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.66 Total: 11.73 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.35 Total: 2.19 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.23 Total: -52.50 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.14 Total: -23.15 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.04 -7.52 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066532684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.712 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds