Wall clock time and date at job start Tue Mar 31 2020 19:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46884 * 2 1 4 4 N 1.46899 * 109.47152 * 119.99368 * 2 1 3 5 5 C 1.46906 * 110.99674 * 173.61957 * 4 2 1 6 6 C 1.50703 * 109.47219 * 288.32954 * 5 4 2 7 7 O 1.21293 * 119.99927 * 356.89106 * 6 5 4 8 8 N 1.34770 * 120.00150 * 176.88917 * 6 5 4 9 9 C 1.37100 * 120.00424 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99270 * 359.97438 * 9 8 6 11 11 C 1.38943 * 120.00008 * 179.97438 * 9 8 6 12 12 N 1.31408 * 120.00519 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99911 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46893 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47252 * 119.99832 * 13 11 9 16 16 H 1.48500 * 109.47267 * 240.00296 * 13 11 9 17 17 C 1.46890 * 111.00444 * 297.57705 * 4 2 1 18 18 C 1.50698 * 109.47311 * 83.49750 * 17 4 2 19 19 O 1.21290 * 119.99851 * 7.59393 * 18 17 4 20 20 N 1.34775 * 119.99907 * 187.59511 * 18 17 4 21 21 C 1.40030 * 119.99864 * 185.51200 * 20 18 17 22 22 C 1.38850 * 120.04757 * 35.46317 * 21 20 18 23 23 C 1.38115 * 119.95632 * 180.21288 * 22 21 20 24 24 C 1.38477 * 120.04453 * 359.52089 * 23 22 21 25 25 F 1.35096 * 119.95517 * 180.25379 * 24 23 22 26 26 C 1.38477 * 120.08807 * 0.23068 * 24 23 22 27 27 C 1.38112 * 120.04669 * 359.97438 * 26 24 23 28 28 H 1.08994 * 109.47197 * 304.20127 * 1 2 3 29 29 H 1.08994 * 109.47468 * 64.20676 * 1 2 3 30 30 H 1.09000 * 109.46679 * 184.20588 * 1 2 3 31 31 H 1.08992 * 109.47279 * 240.00166 * 2 1 3 32 32 H 1.09001 * 109.47096 * 179.49220 * 3 2 1 33 33 H 1.09007 * 109.46871 * 299.49318 * 3 2 1 34 34 H 1.08999 * 109.47184 * 59.48936 * 3 2 1 35 35 H 1.08998 * 109.47190 * 48.33138 * 5 4 2 36 36 H 1.09001 * 109.46858 * 168.33598 * 5 4 2 37 37 H 0.97007 * 119.99624 * 0.02562 * 8 6 5 38 38 H 0.96998 * 120.00516 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47038 * 323.49781 * 17 4 2 40 40 H 1.09003 * 109.47193 * 203.49919 * 17 4 2 41 41 H 0.97003 * 120.00259 * 5.50505 * 20 18 17 42 42 H 1.07998 * 120.02595 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.97926 * 179.79553 * 23 22 21 44 44 H 1.08004 * 119.97447 * 180.02562 * 26 24 23 45 45 H 1.07996 * 120.02476 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4802 -0.8453 1.1596 6 6 3.8493 -1.8758 0.1237 7 8 2.9794 -2.4691 -0.4783 8 7 5.1459 -2.1381 -0.1337 9 6 5.4818 -3.0751 -1.0765 10 1 4.7071 -3.6034 -1.6125 11 6 6.8185 -3.3451 -1.3423 12 7 7.7610 -2.7019 -0.6904 13 14 7.2761 -4.6223 -2.6263 14 1 6.0399 -5.1998 -3.2124 15 1 8.0799 -3.9812 -3.6978 16 1 8.0721 -5.7019 -1.9889 17 6 1.5967 0.0064 2.4203 18 6 0.1970 -0.4185 2.7830 19 8 -0.3387 -1.3221 2.1767 20 7 -0.4593 0.2056 3.7811 21 6 -1.7124 -0.2626 4.1952 22 6 -1.9800 -1.6250 4.1957 23 6 -3.2180 -2.0845 4.6004 24 6 -4.1887 -1.1881 5.0149 25 9 -5.3973 -1.6399 5.4153 26 6 -3.9220 0.1707 5.0201 27 6 -2.6867 0.6346 4.6122 28 1 -0.3633 0.5776 0.8499 29 1 -0.3634 0.4471 -0.9252 30 1 -0.3633 -1.0249 0.0754 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0091 33 1 1.6840 1.9537 -0.8946 34 1 1.6692 1.9590 0.8854 35 1 3.9386 0.1094 0.9019 36 1 3.8385 -1.1683 2.1371 37 1 5.8416 -1.6638 0.3480 38 1 8.6943 -2.8901 -0.8762 39 1 1.6166 1.0826 2.2484 40 1 2.2752 -0.2438 3.2359 41 1 -0.0637 0.9791 4.2126 42 1 -1.2218 -2.3249 3.8770 43 1 -3.4278 -3.1440 4.5978 44 1 -4.6803 0.8682 5.3442 45 1 -2.4790 1.6943 4.6167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066532684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:09 Heat of formation + Delta-G solvation = -90.207887 kcal Electronic energy + Delta-G solvation = -28932.159225 eV Core-core repulsion = 24671.022000 eV Total energy + Delta-G solvation = -4261.137225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.85470 -41.71606 -40.47518 -39.45627 -38.12726 -35.86399 -35.60162 -33.34077 -32.85131 -32.12910 -31.00551 -29.31556 -28.02827 -27.23050 -25.47058 -24.32208 -23.53432 -22.00129 -21.16165 -20.40380 -19.76019 -18.91662 -18.41781 -18.12128 -17.69141 -17.57153 -16.96200 -16.55379 -16.46129 -16.37179 -15.78829 -15.63574 -15.35859 -15.15494 -14.95669 -14.52566 -14.47745 -14.34159 -14.14672 -13.89668 -13.79313 -13.49636 -13.47370 -13.39366 -13.02431 -12.85161 -12.50674 -12.39041 -12.32078 -12.14223 -12.09089 -12.01430 -11.67150 -11.37761 -11.22837 -10.75808 -10.25506 -10.08412 -9.96239 -9.06799 -9.03043 -8.44571 -5.92085 0.06712 0.25026 1.36265 1.41184 1.54927 1.66312 1.90011 2.11676 2.30909 2.65459 2.86408 3.22548 3.32602 3.42512 3.70050 3.83742 3.91229 4.01190 4.09451 4.25035 4.26668 4.29461 4.34535 4.40246 4.49831 4.51604 4.60606 4.62992 4.70543 4.82658 4.92044 4.94521 5.14928 5.16795 5.20954 5.25320 5.31833 5.42151 5.43228 5.54266 5.90787 5.96786 6.13819 6.15651 6.56192 6.65467 7.17566 7.30060 7.61898 8.19894 8.73003 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.002188 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.149239 B =12795.523407 C =13344.803902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.078 3.922 3 C -0.181 4.181 4 N -0.521 5.521 5 C 0.058 3.942 6 C 0.440 3.560 7 O -0.617 6.617 8 N -0.577 5.577 9 C -0.328 4.328 10 H 0.073 0.927 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.988 3.012 14 H -0.278 1.278 15 H -0.270 1.270 16 H -0.271 1.271 17 C 0.030 3.970 18 C 0.509 3.491 19 O -0.530 6.530 20 N -0.663 5.663 21 C 0.138 3.862 22 C -0.113 4.113 23 C -0.143 4.143 24 C 0.060 3.940 25 F -0.150 7.150 26 C -0.128 4.128 27 C -0.107 4.107 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.430 0.570 42 H 0.120 0.880 43 H 0.138 0.862 44 H 0.164 0.836 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.736 15.699 15.321 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.030 4.030 3 C -0.239 4.239 4 N -0.245 5.245 5 C -0.073 4.073 6 C 0.228 3.772 7 O -0.502 6.502 8 N -0.215 5.215 9 C -0.458 4.458 10 H 0.091 0.909 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.812 3.188 14 H -0.203 1.203 15 H -0.195 1.195 16 H -0.196 1.196 17 C -0.101 4.101 18 C 0.297 3.703 19 O -0.404 6.404 20 N -0.313 5.313 21 C 0.043 3.957 22 C -0.133 4.133 23 C -0.163 4.163 24 C 0.040 3.960 25 F -0.129 7.129 26 C -0.147 4.147 27 C -0.127 4.127 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.270 0.730 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.182 0.818 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.655 14.143 14.455 26.198 hybrid contribution 1.015 -0.119 -0.442 1.114 sum -15.639 14.024 14.013 25.251 Atomic orbital electron populations 1.21818 0.93988 1.01320 1.00700 1.21655 0.95843 0.92870 0.92612 1.22443 1.01543 0.96218 1.03744 1.61117 1.10040 1.51600 1.01759 1.21834 0.88514 0.97637 0.99273 1.20937 0.82300 0.87070 0.86938 1.90523 1.49428 1.55254 1.54983 1.41915 1.06195 1.36947 1.36447 1.19610 0.92351 1.17200 1.16609 0.90905 1.25944 0.94796 1.00203 1.00273 1.69659 1.00892 1.42864 1.42679 0.84941 0.77972 0.77922 0.77922 1.20254 1.19483 1.19618 1.22222 0.93195 1.00164 0.94500 1.21198 0.88513 0.82115 0.78521 1.90783 1.68309 1.30423 1.50916 1.43431 1.17425 1.34151 1.36267 1.17906 0.86986 0.92309 0.98455 1.20969 0.97212 0.95376 0.99757 1.21121 0.93100 1.00770 1.01291 1.17899 0.81307 0.93699 1.03060 1.91467 1.42695 1.90044 1.88672 1.21256 0.98808 0.93227 1.01435 1.21090 0.90569 1.00816 1.00227 0.92463 0.92585 0.93897 0.93074 0.92417 0.91272 0.89569 0.89884 0.86636 0.76935 0.91386 0.87168 0.85092 0.72967 0.86239 0.84441 0.81800 0.80956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 7.64 71.98 0.55 -3.07 16 2 C 0.08 2.45 2.65 44.92 0.12 2.57 16 3 C -0.18 -3.90 8.62 71.98 0.62 -3.28 16 4 N -0.52 -16.15 3.67 -880.07 -3.23 -19.38 16 5 C 0.06 1.87 5.32 85.56 0.46 2.33 16 6 C 0.44 21.03 7.40 87.66 0.65 21.67 16 7 O -0.62 -35.48 14.57 -3.07 -0.04 -35.52 16 8 N -0.58 -29.51 5.29 -306.99 -1.62 -31.13 16 9 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 10 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 11 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 12 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 13 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 C 0.03 0.56 5.16 85.56 0.44 1.00 16 18 C 0.51 11.37 5.56 87.66 0.49 11.86 16 19 O -0.53 -17.73 11.28 -3.06 -0.03 -17.76 16 20 N -0.66 -9.38 5.34 -303.45 -1.62 -11.00 16 21 C 0.14 2.42 6.24 38.13 0.24 2.66 16 22 C -0.11 -2.59 8.65 22.39 0.19 -2.40 16 23 C -0.14 -3.07 10.02 22.30 0.22 -2.84 16 24 C 0.06 1.16 7.30 22.38 0.16 1.32 16 25 F -0.15 -3.14 17.26 44.97 0.78 -2.37 16 26 C -0.13 -1.75 10.02 22.30 0.22 -1.52 16 27 C -0.11 -1.27 9.96 22.39 0.22 -1.05 16 28 H 0.06 1.43 5.92 -2.39 -0.01 1.42 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.64 6.67 -2.39 -0.02 1.62 16 31 H 0.05 2.13 6.43 -2.39 -0.02 2.12 16 32 H 0.06 1.28 6.33 -2.39 -0.02 1.27 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.09 1.27 5.96 -2.39 -0.01 1.25 16 35 H 0.08 2.23 6.04 -2.39 -0.01 2.21 16 36 H 0.12 3.10 7.63 -2.39 -0.02 3.08 16 37 H 0.40 18.94 7.90 -92.70 -0.73 18.21 16 38 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.11 1.30 5.35 -2.39 -0.01 1.29 16 40 H 0.13 1.80 7.51 -2.39 -0.02 1.78 16 41 H 0.43 2.17 8.83 -92.71 -0.82 1.35 16 42 H 0.12 3.34 6.59 -2.91 -0.02 3.32 16 43 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 45 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 Total: -1.00 -80.62 368.14 1.91 -78.71 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.49 Total: 30.92 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.87 Total: 10.98 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -6.19 Total: -110.67 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.08 Total: -53.28 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -80.62 1.91 -78.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066532684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.498 kcal (2) G-P(sol) polarization free energy of solvation -80.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds