Wall clock time and date at job start Tue Mar 31 2020 19:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 H 1.08994 * 109.47281 * 306.82810 * 3 2 1 5 5 C 1.50701 * 109.46968 * 186.82348 * 3 2 1 6 6 H 1.08001 * 120.00169 * 245.37486 * 5 3 2 7 7 C 1.37877 * 120.00158 * 65.37763 * 5 3 2 8 8 N 1.31516 * 120.00085 * 202.57342 * 7 5 3 9 9 Si 1.86798 * 119.99939 * 22.57053 * 7 5 3 10 10 H 1.48498 * 109.47503 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47177 * 300.00386 * 9 7 5 12 12 H 1.48505 * 109.46907 * 59.99849 * 9 7 5 13 13 N 1.46498 * 109.46931 * 66.82771 * 3 2 1 14 14 C 1.34782 * 119.99902 * 274.99721 * 13 3 2 15 15 O 1.21597 * 119.99938 * 0.02562 * 14 13 3 16 16 N 1.34773 * 120.00255 * 180.02562 * 14 13 3 17 17 C 1.40084 * 120.00390 * 184.38865 * 16 14 13 18 18 C 1.39042 * 119.96023 * 322.27299 * 17 16 14 19 19 C 1.38110 * 120.27052 * 179.97438 * 18 17 16 20 20 C 1.38330 * 120.19663 * 359.97438 * 19 18 17 21 21 F 1.35096 * 120.03771 * 179.97438 * 20 19 18 22 22 C 1.39809 * 119.92093 * 0.02562 * 20 19 18 23 23 C 1.47704 * 120.13555 * 179.97438 * 22 20 19 24 24 O 1.21573 * 119.99887 * 301.33709 * 23 22 20 25 25 N 1.34776 * 120.00068 * 121.32920 * 23 22 20 26 26 C 1.46495 * 120.00002 * 184.45563 * 25 23 22 27 27 C 1.46504 * 119.99963 * 4.46124 * 25 23 22 28 28 C 1.38472 * 119.96590 * 141.99365 * 17 16 14 29 29 H 1.09004 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46804 * 299.99734 * 1 2 3 31 31 H 1.09000 * 109.47435 * 59.99844 * 1 2 3 32 32 H 1.09006 * 109.46804 * 240.00266 * 2 1 3 33 33 H 1.09002 * 109.47109 * 120.00857 * 2 1 3 34 34 H 0.96997 * 119.99894 * 354.96087 * 8 7 5 35 35 H 0.96999 * 120.00323 * 94.99953 * 13 3 2 36 36 H 0.96997 * 119.99686 * 4.38171 * 16 14 13 37 37 H 1.08002 * 119.86095 * 359.97438 * 18 17 16 38 38 H 1.08006 * 119.90213 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47538 * 60.00666 * 26 25 23 40 40 H 1.09003 * 109.47368 * 180.02562 * 26 25 23 41 41 H 1.09003 * 109.47315 * 299.99952 * 26 25 23 42 42 H 1.08994 * 109.47008 * 85.97979 * 27 25 23 43 43 H 1.09003 * 109.46831 * 205.98502 * 27 25 23 44 44 H 1.09001 * 109.46986 * 325.97921 * 27 25 23 45 45 H 1.08003 * 120.09750 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5804 1.9904 -0.8225 5 6 3.5375 1.4457 -0.1688 6 1 4.1703 1.8026 0.6303 7 6 4.0999 0.9931 -1.3435 8 7 5.3467 0.5749 -1.3573 9 14 3.0908 0.9739 -2.9154 10 1 3.9196 0.4471 -4.0293 11 1 1.9009 0.1052 -2.7292 12 1 2.6499 2.3550 -3.2374 13 7 1.6904 2.0840 1.2698 14 6 0.4771 2.6495 1.4275 15 8 -0.3273 2.6268 0.5159 16 7 0.1556 3.2402 2.5954 17 6 -1.1356 3.7465 2.7922 18 6 -1.8061 4.3656 1.7431 19 6 -3.0795 4.8666 1.9299 20 6 -3.6971 4.7553 3.1626 21 9 -4.9425 5.2470 3.3419 22 6 -3.0304 4.1344 4.2231 23 6 -3.6852 4.0135 5.5416 24 8 -4.0497 5.0112 6.1329 25 7 -3.8785 2.7972 6.0890 26 6 -4.6142 2.6698 7.3494 27 6 -3.3530 1.6025 5.4235 28 6 -1.7451 3.6248 4.0296 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 5.8932 0.6526 -0.5597 35 1 2.3320 2.1018 1.9970 36 1 0.8183 3.3146 3.2998 37 1 -1.3290 4.4550 0.7783 38 1 -3.5950 5.3460 1.1107 39 1 -5.6222 3.0650 7.2234 40 1 -4.6686 1.6189 7.6337 41 1 -4.0989 3.2305 8.1292 42 1 -2.3186 1.4427 5.7276 43 1 -3.9524 0.7366 5.7049 44 1 -3.3971 1.7393 4.3431 45 1 -1.2263 3.1404 4.8436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157634914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:58 Heat of formation + Delta-G solvation = -73.801364 kcal Electronic energy + Delta-G solvation = -29394.281399 eV Core-core repulsion = 25133.855614 eV Total energy + Delta-G solvation = -4260.425785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.01198 -40.75902 -39.99999 -38.32660 -35.86851 -35.67357 -34.37772 -32.56658 -31.82173 -31.50241 -29.16433 -28.33258 -27.11278 -26.64429 -23.87279 -23.02627 -22.35146 -21.42665 -19.86523 -19.81667 -18.73297 -17.94794 -17.62102 -17.34491 -16.73292 -16.63649 -16.12215 -15.64352 -15.57496 -15.29344 -14.92279 -14.41846 -14.05188 -13.82364 -13.58568 -13.47365 -13.32845 -13.07822 -13.02786 -12.95871 -12.78425 -12.63502 -12.52824 -12.39458 -12.14536 -11.82527 -11.63183 -10.93375 -10.78441 -10.50196 -10.29987 -10.24925 -9.93142 -9.80510 -9.67941 -9.27980 -9.22622 -9.08086 -8.37655 -8.31091 -8.04520 -6.68683 -4.29147 0.69295 0.92347 2.28103 2.59357 2.89884 3.22053 3.34427 3.40194 3.55298 3.63914 4.01638 4.06948 4.35198 4.47933 4.63596 4.72714 4.84437 4.95726 4.98841 4.99497 5.05673 5.22308 5.33077 5.37410 5.41336 5.48680 5.72569 6.01226 6.02040 6.04285 6.04911 6.06747 6.20276 6.29729 6.56962 6.70953 6.80116 6.85047 6.89289 6.94028 7.04017 7.31679 7.37986 7.67038 7.76405 8.16242 8.46655 8.64752 8.95306 9.38624 10.72325 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.002650 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.025256 B =10563.337674 C =11055.239521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.267 3.733 4 H 0.042 0.958 5 C -0.626 4.626 6 H 0.061 0.939 7 C 0.044 3.956 8 N -0.890 5.890 9 Si 1.038 2.962 10 H -0.283 1.283 11 H -0.271 1.271 12 H -0.280 1.280 13 N -0.709 5.709 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.696 5.696 17 C 0.171 3.829 18 C -0.068 4.068 19 C -0.135 4.135 20 C 0.119 3.881 21 F -0.132 7.132 22 C -0.147 4.147 23 C 0.566 3.434 24 O -0.524 6.524 25 N -0.616 5.616 26 C 0.090 3.910 27 C 0.075 3.925 28 C -0.097 4.097 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.270 0.730 35 H 0.391 0.609 36 H 0.406 0.594 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 2.505 13.692 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.163 3.837 4 H 0.060 0.940 5 C -0.664 4.664 6 H 0.079 0.921 7 C -0.164 4.164 8 N -0.522 5.522 9 Si 0.865 3.135 10 H -0.209 1.209 11 H -0.197 1.197 12 H -0.206 1.206 13 N -0.360 5.360 14 C 0.394 3.606 15 O -0.456 6.456 16 N -0.345 5.345 17 C 0.074 3.926 18 C -0.089 4.089 19 C -0.155 4.155 20 C 0.098 3.902 21 F -0.110 7.110 22 C -0.151 4.151 23 C 0.354 3.646 24 O -0.399 6.399 25 N -0.350 5.350 26 C -0.053 4.053 27 C -0.068 4.068 28 C -0.119 4.119 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.224 0.776 36 H 0.241 0.759 37 H 0.174 0.826 38 H 0.163 0.837 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.790 2.478 11.526 20.516 hybrid contribution 0.541 0.424 2.450 2.545 sum -16.249 2.902 13.976 21.629 Atomic orbital electron populations 1.21875 0.97304 0.98783 1.02008 1.22288 0.93784 0.99714 1.01557 1.18970 0.95858 0.88363 0.80501 0.94027 1.22005 0.89708 1.50649 1.04026 0.92058 1.25657 0.97711 0.91635 1.01433 1.70896 1.09605 1.37814 1.33915 0.84095 0.75735 0.77683 0.75957 1.20856 1.19726 1.20585 1.45590 1.12794 1.58574 1.19031 1.16111 0.83829 0.78649 0.81991 1.90898 1.49883 1.64760 1.40031 1.42818 1.11433 1.61919 1.18293 1.17331 0.85840 0.95722 0.93696 1.21435 0.93858 0.93166 1.00392 1.21034 0.96012 1.02599 0.95806 1.17509 0.80905 0.98135 0.93695 1.91522 1.38271 1.85315 1.95899 1.19469 0.96406 1.05545 0.93701 1.18110 0.78625 0.83052 0.84849 1.90813 1.50334 1.36334 1.62452 1.47684 1.56121 1.06700 1.24504 1.21666 0.96503 1.02227 0.84858 1.21987 0.99320 0.86707 0.98808 1.20795 0.93113 1.00466 0.97494 0.95217 0.93220 0.93039 0.91588 0.93200 0.91972 0.77621 0.75883 0.82583 0.83737 0.91963 0.90380 0.91852 0.92109 0.90563 0.90439 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.55 37.16 0.32 -2.37 16 2 C -0.13 -2.81 5.31 -26.73 -0.14 -2.95 16 3 C 0.27 5.87 1.82 -69.08 -0.13 5.75 16 4 H 0.04 1.01 6.17 -51.93 -0.32 0.69 16 5 C -0.63 -15.92 8.96 -34.44 -0.31 -16.23 16 6 H 0.06 1.63 7.96 -52.49 -0.42 1.21 16 7 C 0.04 1.17 5.20 -17.82 -0.09 1.07 16 8 N -0.89 -25.44 13.70 55.43 0.76 -24.68 16 9 Si 1.04 24.00 26.42 -169.99 -4.49 19.51 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -5.89 6.09 56.52 0.34 -5.55 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.71 -12.67 5.04 -59.81 -0.30 -12.98 16 14 C 0.69 11.50 7.05 -86.92 -0.61 10.89 16 15 O -0.58 -11.16 11.09 5.28 0.06 -11.10 16 16 N -0.70 -8.51 5.34 -14.24 -0.08 -8.58 16 17 C 0.17 2.06 6.24 -83.70 -0.52 1.53 16 18 C -0.07 -0.87 8.67 -39.33 -0.34 -1.21 16 19 C -0.14 -1.57 10.00 -39.59 -0.40 -1.97 16 20 C 0.12 1.51 7.28 -38.96 -0.28 1.22 16 21 F -0.13 -1.83 16.77 2.25 0.04 -1.80 16 22 C -0.15 -1.77 4.55 -104.93 -0.48 -2.25 16 23 C 0.57 7.25 6.81 -12.39 -0.08 7.17 16 24 O -0.52 -8.51 17.04 5.30 0.09 -8.42 16 25 N -0.62 -5.89 3.27 -190.70 -0.62 -6.52 16 26 C 0.09 0.67 10.17 59.84 0.61 1.28 16 27 C 0.07 0.52 9.26 59.85 0.55 1.07 16 28 C -0.10 -1.01 8.02 -38.99 -0.31 -1.33 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.92 5.60 -51.93 -0.29 0.63 16 31 H 0.05 1.02 7.95 -51.93 -0.41 0.61 16 32 H 0.07 1.47 5.38 -51.93 -0.28 1.19 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.27 7.63 8.73 -40.82 -0.36 7.27 16 35 H 0.39 6.12 8.54 -40.82 -0.35 5.77 16 36 H 0.41 3.72 8.84 -40.82 -0.36 3.36 16 37 H 0.16 2.24 6.42 -52.49 -0.34 1.90 16 38 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.35 7.74 -51.93 -0.40 -0.05 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.36 7.61 -51.93 -0.40 -0.04 16 43 H 0.08 0.38 7.84 -51.93 -0.41 -0.03 16 44 H 0.08 0.62 6.52 -51.93 -0.34 0.28 16 45 H 0.14 1.12 7.30 -52.48 -0.38 0.74 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -32.42 370.10 -7.21 -39.63 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.02 Total: 7.67 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.22 Total: 1.68 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.24 Total: -52.76 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.15 Total: -19.52 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -4.49 Total: 19.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.42 -7.21 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157634914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.172 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds