Wall clock time and date at job start Tue Mar 31 2020 19:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 H 1.08994 * 109.47281 * 306.82810 * 3 2 1 5 5 C 1.50701 * 109.46968 * 186.82348 * 3 2 1 6 6 H 1.08001 * 120.00169 * 245.37486 * 5 3 2 7 7 C 1.37877 * 120.00158 * 65.37763 * 5 3 2 8 8 N 1.31516 * 120.00085 * 202.57342 * 7 5 3 9 9 Si 1.86798 * 119.99939 * 22.57053 * 7 5 3 10 10 H 1.48498 * 109.47503 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47177 * 300.00386 * 9 7 5 12 12 H 1.48505 * 109.46907 * 59.99849 * 9 7 5 13 13 N 1.46498 * 109.46931 * 66.82771 * 3 2 1 14 14 C 1.34782 * 119.99902 * 274.99721 * 13 3 2 15 15 O 1.21597 * 119.99938 * 0.02562 * 14 13 3 16 16 N 1.34773 * 120.00255 * 180.02562 * 14 13 3 17 17 C 1.40084 * 120.00390 * 184.38865 * 16 14 13 18 18 C 1.39042 * 119.96023 * 322.27299 * 17 16 14 19 19 C 1.38110 * 120.27052 * 179.97438 * 18 17 16 20 20 C 1.38330 * 120.19663 * 359.97438 * 19 18 17 21 21 F 1.35096 * 120.03771 * 179.97438 * 20 19 18 22 22 C 1.39809 * 119.92093 * 0.02562 * 20 19 18 23 23 C 1.47704 * 120.13555 * 179.97438 * 22 20 19 24 24 O 1.21573 * 119.99887 * 301.33709 * 23 22 20 25 25 N 1.34776 * 120.00068 * 121.32920 * 23 22 20 26 26 C 1.46495 * 120.00002 * 184.45563 * 25 23 22 27 27 C 1.46504 * 119.99963 * 4.46124 * 25 23 22 28 28 C 1.38472 * 119.96590 * 141.99365 * 17 16 14 29 29 H 1.09004 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46804 * 299.99734 * 1 2 3 31 31 H 1.09000 * 109.47435 * 59.99844 * 1 2 3 32 32 H 1.09006 * 109.46804 * 240.00266 * 2 1 3 33 33 H 1.09002 * 109.47109 * 120.00857 * 2 1 3 34 34 H 0.96997 * 119.99894 * 354.96087 * 8 7 5 35 35 H 0.96999 * 120.00323 * 94.99953 * 13 3 2 36 36 H 0.96997 * 119.99686 * 4.38171 * 16 14 13 37 37 H 1.08002 * 119.86095 * 359.97438 * 18 17 16 38 38 H 1.08006 * 119.90213 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47538 * 60.00666 * 26 25 23 40 40 H 1.09003 * 109.47368 * 180.02562 * 26 25 23 41 41 H 1.09003 * 109.47315 * 299.99952 * 26 25 23 42 42 H 1.08994 * 109.47008 * 85.97979 * 27 25 23 43 43 H 1.09003 * 109.46831 * 205.98502 * 27 25 23 44 44 H 1.09001 * 109.46986 * 325.97921 * 27 25 23 45 45 H 1.08003 * 120.09750 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5804 1.9904 -0.8225 5 6 3.5375 1.4457 -0.1688 6 1 4.1703 1.8026 0.6303 7 6 4.0999 0.9931 -1.3435 8 7 5.3467 0.5749 -1.3573 9 14 3.0908 0.9739 -2.9154 10 1 3.9196 0.4471 -4.0293 11 1 1.9009 0.1052 -2.7292 12 1 2.6499 2.3550 -3.2374 13 7 1.6904 2.0840 1.2698 14 6 0.4771 2.6495 1.4275 15 8 -0.3273 2.6268 0.5159 16 7 0.1556 3.2402 2.5954 17 6 -1.1356 3.7465 2.7922 18 6 -1.8061 4.3656 1.7431 19 6 -3.0795 4.8666 1.9299 20 6 -3.6971 4.7553 3.1626 21 9 -4.9425 5.2470 3.3419 22 6 -3.0304 4.1344 4.2231 23 6 -3.6852 4.0135 5.5416 24 8 -4.0497 5.0112 6.1329 25 7 -3.8785 2.7972 6.0890 26 6 -4.6142 2.6698 7.3494 27 6 -3.3530 1.6025 5.4235 28 6 -1.7451 3.6248 4.0296 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 5.8932 0.6526 -0.5597 35 1 2.3320 2.1018 1.9970 36 1 0.8183 3.3146 3.2998 37 1 -1.3290 4.4550 0.7783 38 1 -3.5950 5.3460 1.1107 39 1 -5.6222 3.0650 7.2234 40 1 -4.6686 1.6189 7.6337 41 1 -4.0989 3.2305 8.1292 42 1 -2.3186 1.4427 5.7276 43 1 -3.9524 0.7366 5.7049 44 1 -3.3971 1.7393 4.3431 45 1 -1.2263 3.1404 4.8436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157634914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:57 Heat of formation + Delta-G solvation = -96.406820 kcal Electronic energy + Delta-G solvation = -29395.261645 eV Core-core repulsion = 25133.855614 eV Total energy + Delta-G solvation = -4261.406031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.04173 -41.84367 -41.07296 -39.43580 -37.20924 -36.70639 -35.61004 -34.45235 -33.05697 -32.71745 -30.29811 -28.94440 -28.80287 -27.41798 -24.80568 -24.43681 -23.76892 -22.63845 -21.42702 -20.86853 -20.22576 -19.12990 -18.73876 -18.61766 -17.72994 -17.64952 -17.13956 -16.82943 -16.58849 -16.45997 -16.19727 -15.58926 -15.27850 -15.10400 -14.69290 -14.61273 -14.51459 -14.38747 -14.30340 -14.06694 -13.86924 -13.65610 -13.56656 -13.55110 -13.37939 -12.82300 -12.61775 -12.58616 -12.44840 -12.25101 -11.74924 -11.55162 -11.31741 -11.27676 -11.16719 -10.99270 -10.35147 -10.20817 -9.85403 -9.82499 -9.14950 -8.77708 -6.38817 -0.26787 -0.01124 1.31735 1.49994 1.53892 1.63664 1.73908 1.91119 2.08880 2.44567 2.52462 3.01849 3.07236 3.22333 3.34701 3.64793 3.98698 4.08212 4.19690 4.28515 4.38116 4.38999 4.44386 4.47295 4.60109 4.61179 4.70169 4.81057 4.86735 4.89201 4.90116 5.05837 5.08346 5.17650 5.26440 5.29473 5.35444 5.37560 5.61036 5.64618 5.71392 5.79171 6.04600 6.09868 6.13654 6.58580 6.87351 7.14776 7.33198 7.62272 8.61668 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.002650 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.025256 B =10563.337674 C =11055.239521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.273 3.727 4 H 0.025 0.975 5 C -0.619 4.619 6 H 0.041 0.959 7 C 0.000 4.000 8 N -0.924 5.924 9 Si 1.068 2.932 10 H -0.286 1.286 11 H -0.249 1.249 12 H -0.272 1.272 13 N -0.711 5.711 14 C 0.698 3.302 15 O -0.603 6.603 16 N -0.676 5.676 17 C 0.162 3.838 18 C -0.078 4.078 19 C -0.128 4.128 20 C 0.104 3.896 21 F -0.142 7.142 22 C -0.149 4.149 23 C 0.559 3.441 24 O -0.569 6.569 25 N -0.609 5.609 26 C 0.084 3.916 27 C 0.067 3.933 28 C -0.075 4.075 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.259 0.741 35 H 0.402 0.598 36 H 0.423 0.577 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.053 0.947 40 H 0.114 0.886 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 1.474 14.853 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.170 4.170 3 C 0.168 3.832 4 H 0.043 0.957 5 C -0.657 4.657 6 H 0.060 0.940 7 C -0.202 4.202 8 N -0.558 5.558 9 Si 0.891 3.109 10 H -0.212 1.212 11 H -0.173 1.173 12 H -0.198 1.198 13 N -0.363 5.363 14 C 0.398 3.602 15 O -0.483 6.483 16 N -0.326 5.326 17 C 0.066 3.934 18 C -0.099 4.099 19 C -0.147 4.147 20 C 0.083 3.917 21 F -0.121 7.121 22 C -0.154 4.154 23 C 0.347 3.653 24 O -0.449 6.449 25 N -0.341 5.341 26 C -0.058 4.058 27 C -0.074 4.074 28 C -0.096 4.096 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.237 0.763 36 H 0.262 0.738 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.194 1.428 12.755 22.266 hybrid contribution 0.938 0.771 2.205 2.517 sum -17.256 2.199 14.961 22.944 Atomic orbital electron populations 1.21739 0.95395 1.00089 1.01553 1.22172 0.95362 0.98390 1.01066 1.18607 0.93293 0.89387 0.81894 0.95731 1.22211 0.91643 1.48830 1.02985 0.94048 1.26706 0.97848 0.91439 1.04228 1.70998 1.10707 1.40568 1.33564 0.83704 0.75484 0.78502 0.73211 1.21187 1.17347 1.19786 1.45242 1.13870 1.59067 1.18114 1.16064 0.82933 0.78438 0.82738 1.90892 1.50475 1.65593 1.41343 1.42457 1.12014 1.60800 1.17356 1.17386 0.85663 0.96147 0.94177 1.21362 0.94340 0.94068 1.00087 1.21108 0.95564 1.02066 0.95970 1.17737 0.80790 0.98719 0.94410 1.91494 1.38997 1.85586 1.95995 1.19564 0.96939 1.05507 0.93382 1.18280 0.78541 0.83565 0.84918 1.90788 1.52552 1.37981 1.63585 1.47839 1.55004 1.06434 1.24798 1.21857 0.95645 1.04455 0.83800 1.22225 1.00836 0.86290 0.98083 1.20903 0.92164 0.99099 0.97407 0.92981 0.92917 0.94226 0.93059 0.92752 0.93130 0.76350 0.73843 0.84119 0.82120 0.92818 0.86794 0.92299 0.90343 0.87998 0.91454 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 8.55 71.98 0.62 -3.98 16 2 C -0.13 -5.24 5.31 30.59 0.16 -5.08 16 3 C 0.27 11.76 1.82 44.25 0.08 11.84 16 4 H 0.02 1.17 6.17 -2.39 -0.01 1.15 16 5 C -0.62 -31.45 8.96 25.60 0.23 -31.22 16 6 H 0.04 2.22 7.96 -2.91 -0.02 2.20 16 7 C 0.00 -0.02 5.20 84.65 0.44 0.42 16 8 N -0.92 -53.67 13.70 21.45 0.29 -53.38 16 9 Si 1.07 48.07 26.42 68.60 1.81 49.88 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.25 -10.24 6.09 99.48 0.61 -9.63 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 N -0.71 -24.28 5.04 -461.41 -2.33 -26.61 16 14 C 0.70 21.79 7.05 179.05 1.26 23.05 16 15 O -0.60 -22.39 11.09 -4.02 -0.04 -22.43 16 16 N -0.68 -14.82 5.34 -317.22 -1.69 -16.52 16 17 C 0.16 3.54 6.24 38.07 0.24 3.78 16 18 C -0.08 -1.90 8.67 22.43 0.19 -1.70 16 19 C -0.13 -2.84 10.00 22.26 0.22 -2.62 16 20 C 0.10 2.56 7.28 22.67 0.17 2.72 16 21 F -0.14 -3.93 16.77 44.97 0.75 -3.17 16 22 C -0.15 -3.36 4.55 -20.07 -0.09 -3.45 16 23 C 0.56 13.63 6.81 86.74 0.59 14.22 16 24 O -0.57 -18.44 17.04 -3.94 -0.07 -18.50 16 25 N -0.61 -10.21 3.27 -875.51 -2.87 -13.08 16 26 C 0.08 1.06 10.17 127.77 1.30 2.36 16 27 C 0.07 0.70 9.26 127.77 1.18 1.88 16 28 C -0.07 -1.36 8.02 22.66 0.18 -1.17 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.05 1.82 5.60 -2.38 -0.01 1.80 16 31 H 0.04 1.48 7.95 -2.39 -0.02 1.46 16 32 H 0.05 2.19 5.38 -2.38 -0.01 2.18 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.26 15.06 8.73 -92.71 -0.81 14.25 16 35 H 0.40 11.89 8.54 -92.71 -0.79 11.10 16 36 H 0.42 6.45 8.84 -92.71 -0.82 5.63 16 37 H 0.14 3.94 6.42 -2.91 -0.02 3.92 16 38 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 0.60 7.74 -2.39 -0.02 0.58 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.58 7.61 -2.39 -0.02 0.56 16 43 H 0.10 0.57 7.84 -2.39 -0.02 0.55 16 44 H 0.07 0.88 6.52 -2.39 -0.02 0.86 16 45 H 0.17 2.03 7.30 -2.91 -0.02 2.01 16 Total: -1.00 -71.31 370.10 1.94 -69.37 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.70 Total: 23.40 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.77 Total: 11.04 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -6.59 Total: -109.58 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.11 Total: -40.93 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.75 Total: -3.17 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.81 Total: 49.88 kcal Total: -71.31 1.94 -69.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157634914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.036 kcal (2) G-P(sol) polarization free energy of solvation -71.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds