Wall clock time and date at job start Tue Mar 31 2020 19:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 N 1.46500 * 109.47299 * 180.02562 * 16 14 13 18 18 C 1.34768 * 119.99926 * 179.97438 * 17 16 14 19 19 O 1.21592 * 119.99919 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00282 * 180.02562 * 18 17 16 21 21 C 1.46496 * 120.00315 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47145 * 179.97438 * 21 20 18 23 23 C 1.38248 * 119.97791 * 269.72616 * 22 21 20 24 24 C 1.38201 * 120.02590 * 179.72128 * 23 22 21 25 25 C 1.38454 * 119.97378 * 0.57996 * 24 23 22 26 26 F 1.35103 * 120.02553 * 179.67979 * 25 24 23 27 27 C 1.38463 * 119.94957 * 359.69602 * 25 24 23 28 28 C 1.38200 * 119.97381 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 30 30 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 32 32 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 33 33 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 34 34 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 36 36 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 37 37 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 38 38 H 0.96997 * 119.99787 * 0.02562 * 17 16 14 39 39 H 0.97005 * 119.99821 * 0.02562 * 20 18 17 40 40 H 1.08991 * 109.47507 * 300.00159 * 21 20 18 41 41 H 1.09008 * 109.47097 * 60.00283 * 21 20 18 42 42 H 1.07997 * 119.98305 * 359.97438 * 23 22 21 43 43 H 1.07996 * 120.00786 * 180.25518 * 24 23 22 44 44 H 1.08002 * 120.01140 * 179.97438 * 27 25 24 45 45 H 1.08000 * 119.98288 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 7 -1.3177 3.8812 2.5229 18 6 -1.8870 4.5305 3.5576 19 8 -1.2747 4.6702 4.5987 20 7 -3.1351 5.0248 3.4384 21 6 -3.7538 5.7310 4.5629 22 6 -5.1387 6.1801 4.1734 23 6 -5.3254 7.4228 3.5972 24 6 -6.5942 7.8332 3.2344 25 6 -7.6801 7.0042 3.4591 26 9 -8.9217 7.4071 3.1107 27 6 -7.4926 5.7621 4.0415 28 6 -6.2222 5.3514 4.3983 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0617 -2.9496 35 1 2.2720 2.1230 1.9979 36 1 0.0655 2.6181 3.4660 37 1 0.7332 4.1557 2.8675 38 1 -1.8063 3.7694 1.6925 39 1 -3.6238 4.9130 2.6079 40 1 -3.8163 5.0628 5.4216 41 1 -3.1499 6.6006 4.8224 42 1 -4.4788 8.0714 3.4269 43 1 -6.7392 8.8024 2.7805 44 1 -8.3390 5.1148 4.2177 45 1 -6.0757 4.3824 4.8521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358060323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:35 Heat of formation + Delta-G solvation = -93.793963 kcal Electronic energy + Delta-G solvation = -27638.039973 eV Core-core repulsion = 23376.747244 eV Total energy + Delta-G solvation = -4261.292729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.33574 -40.32880 -39.55294 -38.87989 -35.47575 -35.02510 -34.12482 -32.48827 -31.65003 -31.47746 -30.97928 -28.13419 -26.74155 -25.49554 -23.56206 -23.03650 -21.94783 -21.02293 -20.44811 -19.47281 -18.84066 -18.14376 -17.21110 -16.90649 -16.50421 -16.02365 -15.91236 -15.81002 -15.41307 -15.28226 -14.86688 -14.59415 -14.55615 -14.10863 -14.04595 -13.92024 -13.72431 -13.17468 -12.75819 -12.73969 -12.70208 -12.52672 -12.03601 -11.86497 -11.51172 -11.47847 -11.30046 -11.04148 -10.86289 -10.38456 -10.36539 -10.22847 -9.70214 -9.62201 -9.41247 -9.21198 -9.14696 -9.09786 -8.89821 -8.55534 -7.94153 -6.16971 -4.26589 0.52888 0.72768 2.54118 3.12613 3.14569 3.21834 3.24839 3.29435 3.31521 3.77251 3.96116 4.17392 4.21323 4.29542 4.36351 4.41392 4.73835 4.75728 5.14529 5.19727 5.27229 5.36157 5.42274 5.51934 5.55175 5.56922 5.62193 5.70196 6.01007 6.23758 6.33163 6.36506 6.38818 6.41068 6.59153 6.82812 6.97549 7.11970 7.28063 7.34362 7.55469 7.66100 7.83343 7.95671 8.12059 8.49891 8.57548 8.69997 8.98255 9.40660 10.88279 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.001719 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.473805 B =16285.054980 C =16651.664464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.496 3.504 15 O -0.549 6.549 16 C 0.116 3.884 17 N -0.728 5.728 18 C 0.707 3.293 19 O -0.595 6.595 20 N -0.745 5.745 21 C 0.183 3.817 22 C -0.118 4.118 23 C -0.069 4.069 24 C -0.156 4.156 25 C 0.105 3.895 26 F -0.139 7.139 27 C -0.156 4.156 28 C -0.069 4.069 29 H 0.049 0.951 30 H 0.023 0.977 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.392 0.608 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.408 0.592 39 H 0.399 0.601 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.705 11.160 12.528 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.280 3.720 15 O -0.429 6.429 16 C -0.012 4.012 17 N -0.386 5.386 18 C 0.407 3.593 19 O -0.474 6.474 20 N -0.402 5.402 21 C 0.059 3.941 22 C -0.119 4.119 23 C -0.088 4.088 24 C -0.175 4.175 25 C 0.085 3.915 26 F -0.118 7.118 27 C -0.175 4.175 28 C -0.088 4.088 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.224 0.776 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.246 0.754 39 H 0.233 0.767 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.667 11.157 12.597 25.132 hybrid contribution 0.551 -0.084 -0.630 0.841 sum -18.116 11.073 11.966 24.372 Atomic orbital electron populations 1.21830 0.98372 0.98116 1.01073 1.21945 0.92591 0.99750 1.02437 1.18834 0.94338 0.89196 0.80731 0.93178 1.21226 0.90622 1.39170 1.06364 0.91968 1.24887 0.98682 0.94759 0.95351 1.69890 1.35174 1.37496 1.09372 0.86441 0.84766 0.78486 0.77380 1.20526 1.21089 1.19836 1.46445 1.14381 1.55167 1.18853 1.20255 0.83322 0.79668 0.88765 1.90654 1.51477 1.60492 1.40281 1.20988 0.83681 0.99347 0.97179 1.44751 1.17087 1.60142 1.16660 1.15798 0.81170 0.78578 0.83776 1.90928 1.63512 1.64484 1.28469 1.45092 1.15514 1.61813 1.17747 1.19970 0.88423 0.97006 0.88711 1.19995 0.95302 0.95086 1.01537 1.21026 0.96647 0.95564 0.95521 1.21191 0.91962 1.00881 1.03447 1.17817 0.79804 0.94403 0.99465 1.91519 1.39635 1.90750 1.89885 1.21193 0.98970 0.95566 1.01760 1.21023 0.90991 0.99498 0.97256 0.93159 0.95801 0.94407 0.88197 0.94921 0.92525 0.77560 0.89102 0.89015 0.75445 0.76718 0.90467 0.90469 0.84555 0.84468 0.84472 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.52 37.16 0.32 -2.58 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.47 2.24 -69.08 -0.15 6.32 16 4 H 0.05 1.39 7.57 -51.93 -0.39 1.00 16 5 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -24.06 11.29 55.43 0.63 -23.43 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -13.46 5.02 -54.93 -0.28 -13.73 16 14 C 0.50 8.85 6.47 -10.98 -0.07 8.78 16 15 O -0.55 -11.33 12.84 5.56 0.07 -11.25 16 16 C 0.12 1.65 6.15 -5.19 -0.03 1.62 16 17 N -0.73 -9.66 5.53 -66.41 -0.37 -10.03 16 18 C 0.71 9.32 8.57 -86.93 -0.74 8.58 16 19 O -0.60 -9.84 16.34 5.28 0.09 -9.75 16 20 N -0.75 -7.00 5.55 -66.42 -0.37 -7.37 16 21 C 0.18 1.45 5.80 -5.20 -0.03 1.42 16 22 C -0.12 -0.78 5.25 -104.62 -0.55 -1.33 16 23 C -0.07 -0.43 9.70 -39.59 -0.38 -0.81 16 24 C -0.16 -1.02 10.03 -39.52 -0.40 -1.42 16 25 C 0.10 0.79 7.30 -39.42 -0.29 0.50 16 26 F -0.14 -1.21 17.27 2.25 0.04 -1.17 16 27 C -0.16 -1.02 10.03 -39.51 -0.40 -1.42 16 28 C -0.07 -0.43 9.70 -39.59 -0.38 -0.81 16 29 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.77 5.67 -51.93 -0.29 0.47 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.39 6.52 8.54 -40.82 -0.35 6.18 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.41 5.26 7.45 -40.82 -0.30 4.96 16 39 H 0.40 3.07 8.48 -40.82 -0.35 2.72 16 40 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.08 0.64 8.08 -51.92 -0.42 0.22 16 42 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -31.18 382.44 -9.27 -40.45 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -6.17 Total: 11.95 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -3.65 Total: 3.43 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.39 Total: -54.56 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.16 Total: -21.00 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.18 -9.27 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358060323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.349 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds