Wall clock time and date at job start Tue Mar 31 2020 19:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.46499 * 119.99936 * 90.00137 * 4 3 2 6 6 C 1.50703 * 109.47126 * 89.99796 * 5 4 3 7 7 C 1.38248 * 119.97316 * 269.72655 * 6 5 4 8 8 C 1.38192 * 120.02391 * 179.72648 * 7 6 5 9 9 C 1.38457 * 119.97472 * 0.57050 * 8 7 6 10 10 F 1.35105 * 120.02743 * 179.68688 * 9 8 7 11 11 C 1.38460 * 119.94764 * 359.70144 * 9 8 7 12 12 C 1.38194 * 119.97330 * 0.02562 * 11 9 8 13 13 C 1.34773 * 119.99969 * 269.72101 * 4 3 2 14 14 O 1.21593 * 119.99893 * 180.02562 * 13 4 3 15 15 N 1.34775 * 119.99959 * 0.02562 * 13 4 3 16 16 C 1.46507 * 119.99880 * 179.97438 * 15 13 4 17 17 C 1.50693 * 109.47245 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99923 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00288 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99961 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00399 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99425 * 180.02562 * 20 19 17 23 23 N 1.31402 * 120.00267 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99536 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47330 * 59.99542 * 24 22 20 26 26 H 1.48499 * 109.47139 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46954 * 299.99433 * 24 22 20 28 28 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 30 30 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 31 31 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 32 32 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 33 33 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 34 34 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 35 35 H 1.08994 * 109.47173 * 210.00167 * 5 4 3 36 36 H 1.09005 * 109.47077 * 330.00338 * 5 4 3 37 37 H 1.08003 * 119.98571 * 359.97438 * 7 6 5 38 38 H 1.08008 * 120.01380 * 180.25256 * 8 7 6 39 39 H 1.08008 * 120.01265 * 179.97438 * 11 9 8 40 40 H 1.08003 * 119.98383 * 180.02562 * 12 11 9 41 41 H 0.96990 * 120.00509 * 359.97438 * 15 13 4 42 42 H 1.09004 * 109.46866 * 299.99680 * 16 15 13 43 43 H 1.09000 * 109.47163 * 59.99058 * 16 15 13 44 44 H 0.97003 * 119.99349 * 359.97438 * 19 17 16 45 45 H 0.97000 * 120.00155 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2381 1.4422 -1.2678 6 6 4.4894 2.8630 -1.7029 7 6 3.5704 3.5122 -2.5062 8 6 3.7971 4.8169 -2.9012 9 6 4.9508 5.4700 -2.5019 10 9 5.1766 6.7435 -2.8927 11 6 5.8732 4.8169 -1.7020 12 6 5.6416 3.5141 -1.3036 13 6 4.1784 1.4483 1.1681 14 8 5.3943 1.4487 1.1685 15 7 3.5040 1.4536 2.3349 16 6 4.2360 1.4594 3.6040 17 6 3.2563 1.4653 4.7490 18 8 2.0639 1.4652 4.5269 19 7 3.7050 1.4707 6.0199 20 6 2.8137 1.4755 7.0615 21 1 1.7520 1.4755 6.8638 22 6 3.2764 1.4816 8.3718 23 7 4.5682 1.4822 8.6124 24 14 2.0619 1.4889 9.7911 25 1 1.2076 0.2765 9.7178 26 1 2.8038 1.4942 11.0774 27 1 1.2088 2.7015 9.7063 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1903 0.9284 -1.1370 36 1 3.6492 0.9284 -2.0277 37 1 2.6731 3.0008 -2.8219 38 1 3.0771 5.3253 -3.5255 39 1 6.7737 5.3253 -1.3902 40 1 6.3608 3.0046 -0.6793 41 1 2.5341 1.4537 2.3346 42 1 4.8626 0.5696 3.6661 43 1 4.8628 2.3495 3.6579 44 1 4.6587 1.4704 6.1975 45 1 4.8912 1.4861 9.5270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358286919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:51 Heat of formation + Delta-G solvation = -90.845019 kcal Electronic energy + Delta-G solvation = -28682.356334 eV Core-core repulsion = 24421.191481 eV Total energy + Delta-G solvation = -4261.164853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.08069 -40.42700 -39.10566 -38.19891 -36.28055 -34.56639 -33.82341 -33.18625 -31.42414 -31.34019 -31.11866 -27.83736 -26.77525 -25.46117 -24.20254 -23.25433 -21.91969 -21.80606 -19.71210 -19.59657 -18.36969 -17.89640 -17.76492 -16.59659 -16.44130 -16.16953 -15.75834 -15.59601 -15.24503 -14.89361 -14.64724 -14.51056 -14.41743 -14.06772 -13.90547 -13.76851 -13.59280 -13.48819 -13.28422 -12.50159 -12.44348 -12.30822 -12.16433 -12.07113 -11.84976 -11.67256 -11.62941 -11.46360 -11.14981 -11.10787 -10.89340 -10.51273 -10.31843 -10.00221 -9.62848 -9.30708 -8.97948 -8.83141 -8.62649 -8.50186 -8.10224 -6.51554 -3.93590 0.86055 1.03885 2.68821 3.13249 3.21168 3.24760 3.32538 3.46321 3.74926 3.99884 4.05395 4.16031 4.47174 4.57227 4.68538 4.71139 4.84570 4.89163 4.92648 5.05392 5.13452 5.17148 5.25042 5.31487 5.46362 5.51316 5.65137 5.72906 5.78641 5.86001 5.89851 5.90337 5.98683 6.00409 6.06210 6.07827 6.14678 6.30159 6.45537 6.68055 6.75562 6.99580 7.45525 7.91953 8.13733 8.45061 8.75740 9.04362 9.39338 9.87243 10.65300 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.002491 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.208525 B =11235.519338 C =12387.401979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.108 3.892 4 N -0.626 5.626 5 C 0.175 3.825 6 C -0.116 4.116 7 C -0.079 4.079 8 C -0.160 4.160 9 C 0.097 3.903 10 F -0.143 7.143 11 C -0.157 4.157 12 C -0.062 4.062 13 C 0.708 3.292 14 O -0.594 6.594 15 N -0.723 5.723 16 C 0.127 3.873 17 C 0.428 3.572 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.407 0.593 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 1.183 -22.754 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C -0.016 4.016 4 N -0.362 5.362 5 C 0.052 3.948 6 C -0.118 4.118 7 C -0.098 4.098 8 C -0.178 4.178 9 C 0.078 3.922 10 F -0.121 7.121 11 C -0.175 4.175 12 C -0.080 4.080 13 C 0.409 3.591 14 O -0.473 6.473 15 N -0.382 5.382 16 C -0.001 4.001 17 C 0.214 3.786 18 O -0.485 6.485 19 N -0.183 5.183 20 C -0.435 4.435 21 H 0.122 0.878 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.760 3.240 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.246 0.754 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.285 1.218 -22.653 22.722 hybrid contribution -0.414 0.387 0.868 1.037 sum -1.699 1.605 -21.784 21.909 Atomic orbital electron populations 1.21706 0.94959 1.02118 1.02105 1.21970 0.96351 0.96975 1.02929 1.21644 0.79451 0.97120 1.03339 1.47107 1.05967 1.78799 1.04373 1.20147 0.98550 0.91845 0.84293 1.20417 0.95005 0.97978 0.98392 1.20904 0.98639 0.93572 0.96645 1.21088 0.97216 0.96037 1.03507 1.17784 0.96124 0.79611 0.98707 1.91495 1.94776 1.36486 1.89383 1.21219 1.00205 0.96131 0.99978 1.21167 0.97089 0.93255 0.96536 1.15792 0.85192 0.77771 0.80314 1.90871 1.11442 1.58653 1.86370 1.44950 1.11042 1.78520 1.03656 1.20792 0.94025 1.03092 0.82228 1.19759 0.89147 0.85526 0.84157 1.90485 1.16517 1.57399 1.84099 1.41779 1.09989 1.62640 1.03929 1.19671 0.91378 1.48377 0.84047 0.87752 1.25318 0.96675 0.96793 0.98890 1.69601 1.12569 1.49244 1.22070 0.85882 0.79642 0.79145 0.79347 1.19785 1.20852 1.19779 0.92423 0.92014 0.92787 0.91707 0.91240 0.90276 0.90308 0.88631 0.89644 0.85195 0.84903 0.84764 0.84047 0.75357 0.90014 0.90088 0.77025 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.14 -1.31 6.26 -26.73 -0.17 -1.48 16 3 C 0.11 1.04 5.18 -4.04 -0.02 1.02 16 4 N -0.63 -7.34 2.46 -180.80 -0.44 -7.79 16 5 C 0.17 1.68 5.53 -5.19 -0.03 1.65 16 6 C -0.12 -1.16 5.46 -104.62 -0.57 -1.73 16 7 C -0.08 -0.67 9.70 -39.59 -0.38 -1.05 16 8 C -0.16 -1.47 10.03 -39.52 -0.40 -1.87 16 9 C 0.10 1.05 7.30 -39.42 -0.29 0.77 16 10 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 11 C -0.16 -1.69 10.03 -39.52 -0.40 -2.09 16 12 C -0.06 -0.69 9.70 -39.60 -0.38 -1.08 16 13 C 0.71 11.14 8.28 -86.92 -0.72 10.42 16 14 O -0.59 -10.78 15.43 5.28 0.08 -10.70 16 15 N -0.72 -12.14 5.39 -66.41 -0.36 -12.49 16 16 C 0.13 2.35 6.15 -5.19 -0.03 2.32 16 17 C 0.43 9.76 7.85 -10.99 -0.09 9.67 16 18 O -0.60 -15.10 15.24 5.54 0.08 -15.01 16 19 N -0.55 -13.53 5.29 -10.96 -0.06 -13.59 16 20 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 22 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 23 N -0.89 -23.82 13.05 55.50 0.72 -23.10 16 24 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.08 0.88 6.35 -51.93 -0.33 0.55 16 34 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.10 1.02 7.37 -51.93 -0.38 0.63 16 36 H 0.09 0.57 8.01 -51.93 -0.42 0.16 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.14 1.70 7.56 -52.48 -0.40 1.30 16 41 H 0.41 6.77 5.16 -40.82 -0.21 6.56 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -31.21 388.61 -8.66 -39.87 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -6.22 Total: 15.25 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -3.35 Total: 7.88 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.14 Total: -56.96 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.17 Total: -25.71 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.21 -8.66 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.971 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds