Wall clock time and date at job start Tue Mar 31 2020 19:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.46499 * 119.99936 * 90.00137 * 4 3 2 6 6 C 1.50703 * 109.47126 * 89.99796 * 5 4 3 7 7 C 1.38248 * 119.97316 * 269.72655 * 6 5 4 8 8 C 1.38192 * 120.02391 * 179.72648 * 7 6 5 9 9 C 1.38457 * 119.97472 * 0.57050 * 8 7 6 10 10 F 1.35105 * 120.02743 * 179.68688 * 9 8 7 11 11 C 1.38460 * 119.94764 * 359.70144 * 9 8 7 12 12 C 1.38194 * 119.97330 * 0.02562 * 11 9 8 13 13 C 1.34773 * 119.99969 * 269.72101 * 4 3 2 14 14 O 1.21593 * 119.99893 * 180.02562 * 13 4 3 15 15 N 1.34775 * 119.99959 * 0.02562 * 13 4 3 16 16 C 1.46507 * 119.99880 * 179.97438 * 15 13 4 17 17 C 1.50693 * 109.47245 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99923 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00288 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99961 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00399 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99425 * 180.02562 * 20 19 17 23 23 N 1.31402 * 120.00267 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99536 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47330 * 59.99542 * 24 22 20 26 26 H 1.48499 * 109.47139 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46954 * 299.99433 * 24 22 20 28 28 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 30 30 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 31 31 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 32 32 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 33 33 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 34 34 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 35 35 H 1.08994 * 109.47173 * 210.00167 * 5 4 3 36 36 H 1.09005 * 109.47077 * 330.00338 * 5 4 3 37 37 H 1.08003 * 119.98571 * 359.97438 * 7 6 5 38 38 H 1.08008 * 120.01380 * 180.25256 * 8 7 6 39 39 H 1.08008 * 120.01265 * 179.97438 * 11 9 8 40 40 H 1.08003 * 119.98383 * 180.02562 * 12 11 9 41 41 H 0.96990 * 120.00509 * 359.97438 * 15 13 4 42 42 H 1.09004 * 109.46866 * 299.99680 * 16 15 13 43 43 H 1.09000 * 109.47163 * 59.99058 * 16 15 13 44 44 H 0.97003 * 119.99349 * 359.97438 * 19 17 16 45 45 H 0.97000 * 120.00155 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2381 1.4422 -1.2678 6 6 4.4894 2.8630 -1.7029 7 6 3.5704 3.5122 -2.5062 8 6 3.7971 4.8169 -2.9012 9 6 4.9508 5.4700 -2.5019 10 9 5.1766 6.7435 -2.8927 11 6 5.8732 4.8169 -1.7020 12 6 5.6416 3.5141 -1.3036 13 6 4.1784 1.4483 1.1681 14 8 5.3943 1.4487 1.1685 15 7 3.5040 1.4536 2.3349 16 6 4.2360 1.4594 3.6040 17 6 3.2563 1.4653 4.7490 18 8 2.0639 1.4652 4.5269 19 7 3.7050 1.4707 6.0199 20 6 2.8137 1.4755 7.0615 21 1 1.7520 1.4755 6.8638 22 6 3.2764 1.4816 8.3718 23 7 4.5682 1.4822 8.6124 24 14 2.0619 1.4889 9.7911 25 1 1.2076 0.2765 9.7178 26 1 2.8038 1.4942 11.0774 27 1 1.2088 2.7015 9.7063 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1903 0.9284 -1.1370 36 1 3.6492 0.9284 -2.0277 37 1 2.6731 3.0008 -2.8219 38 1 3.0771 5.3253 -3.5255 39 1 6.7737 5.3253 -1.3902 40 1 6.3608 3.0046 -0.6793 41 1 2.5341 1.4537 2.3346 42 1 4.8626 0.5696 3.6661 43 1 4.8628 2.3495 3.6579 44 1 4.6587 1.4704 6.1975 45 1 4.8912 1.4861 9.5270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358286919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:50 Heat of formation + Delta-G solvation = -109.437557 kcal Electronic energy + Delta-G solvation = -28683.162567 eV Core-core repulsion = 24421.191481 eV Total energy + Delta-G solvation = -4261.971086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.92328 -41.55071 -40.27358 -39.71000 -37.28553 -36.26789 -35.37718 -34.08325 -33.37346 -32.09417 -32.02335 -29.30960 -27.58534 -26.81804 -25.69460 -24.00028 -22.70491 -22.66120 -21.38254 -20.85432 -20.10169 -19.24236 -18.62335 -17.71345 -17.44922 -17.17125 -17.13503 -16.61555 -16.54269 -16.42147 -16.02105 -15.65956 -15.59726 -15.28438 -15.13871 -14.89363 -14.49778 -14.39372 -14.27612 -13.92810 -13.60284 -13.53547 -13.24496 -13.13654 -12.98032 -12.89060 -12.78112 -12.46892 -12.46306 -12.17492 -12.13849 -11.89129 -11.64788 -11.55888 -11.23621 -10.55014 -10.25985 -10.09201 -10.05430 -9.69363 -9.50609 -8.50631 -6.00850 0.06844 0.29139 1.38092 1.42318 1.52729 1.62452 1.90090 2.12493 2.27854 2.61451 2.92790 3.16630 3.18270 3.28236 3.75445 3.80907 3.97338 3.97763 4.09668 4.17545 4.23035 4.34157 4.39655 4.45352 4.45887 4.56261 4.59797 4.73617 4.78313 4.96860 4.99903 5.03073 5.16322 5.20665 5.26740 5.28429 5.33780 5.39184 5.43284 5.50909 5.62654 5.90119 5.92331 5.93323 6.48289 6.91847 7.03586 7.42589 7.53810 7.94624 8.66139 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.002491 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.208525 B =11235.519338 C =12387.401979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.106 3.894 4 N -0.616 5.616 5 C 0.173 3.827 6 C -0.120 4.120 7 C -0.068 4.068 8 C -0.157 4.157 9 C 0.078 3.922 10 F -0.151 7.151 11 C -0.169 4.169 12 C -0.079 4.079 13 C 0.704 3.296 14 O -0.623 6.623 15 N -0.727 5.727 16 C 0.141 3.859 17 C 0.434 3.566 18 O -0.623 6.623 19 N -0.559 5.559 20 C -0.337 4.337 21 H 0.087 0.913 22 C -0.011 4.011 23 N -0.917 5.917 24 Si 0.996 3.004 25 H -0.269 1.269 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.408 0.592 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.398 0.602 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 0.947 -24.443 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.017 4.017 4 N -0.351 5.351 5 C 0.051 3.949 6 C -0.122 4.122 7 C -0.087 4.087 8 C -0.175 4.175 9 C 0.059 3.941 10 F -0.130 7.130 11 C -0.187 4.187 12 C -0.098 4.098 13 C 0.405 3.595 14 O -0.504 6.504 15 N -0.386 5.386 16 C 0.012 3.988 17 C 0.221 3.779 18 O -0.511 6.511 19 N -0.195 5.195 20 C -0.466 4.466 21 H 0.105 0.895 22 C -0.211 4.211 23 N -0.557 5.557 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.186 0.814 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.247 0.753 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.232 0.768 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.937 0.981 -24.387 24.582 hybrid contribution 0.102 0.462 1.291 1.374 sum -2.836 1.443 -23.096 23.314 Atomic orbital electron populations 1.21689 0.94125 1.02368 1.02452 1.21907 0.96972 0.96355 1.02374 1.21833 0.77882 0.97727 1.04245 1.47175 1.06935 1.77313 1.03683 1.20371 0.98608 0.91957 0.83964 1.20516 0.94874 0.98120 0.98692 1.21258 0.99131 0.93135 0.95134 1.21422 0.96707 0.96355 1.03027 1.18035 0.97075 0.79564 0.99412 1.91471 1.94935 1.37036 1.89521 1.21292 1.00718 0.96256 1.00483 1.21133 0.97857 0.93578 0.97234 1.15966 0.84941 0.77635 0.80969 1.90855 1.12732 1.59919 1.86879 1.44905 1.10957 1.79202 1.03514 1.20567 0.92907 1.03821 0.81490 1.20405 0.89456 0.83518 0.84556 1.90461 1.18014 1.57973 1.84634 1.41830 1.09850 1.63472 1.04302 1.19700 0.91070 1.50439 0.85410 0.89523 1.26128 0.98446 0.95793 1.00755 1.69672 1.13839 1.49273 1.22887 0.84939 0.77563 0.79132 0.76428 1.19411 1.19671 1.19476 0.92282 0.93640 0.90437 0.89823 0.94226 0.92007 0.86720 0.90091 0.85535 0.81442 0.82572 0.84628 0.85813 0.75254 0.89110 0.89400 0.76754 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.14 -2.20 6.26 30.59 0.19 -2.01 16 3 C 0.11 1.77 5.18 86.38 0.45 2.21 16 4 N -0.62 -13.34 2.46 -844.18 -2.07 -15.41 16 5 C 0.17 2.89 5.53 85.63 0.47 3.36 16 6 C -0.12 -2.15 5.46 -19.86 -0.11 -2.26 16 7 C -0.07 -0.90 9.70 22.26 0.22 -0.69 16 8 C -0.16 -2.44 10.03 22.31 0.22 -2.21 16 9 C 0.08 1.63 7.30 22.37 0.16 1.79 16 10 F -0.15 -3.41 17.27 44.97 0.78 -2.63 16 11 C -0.17 -3.68 10.03 22.31 0.22 -3.46 16 12 C -0.08 -1.77 9.70 22.26 0.22 -1.56 16 13 C 0.70 21.89 8.28 179.06 1.48 23.37 16 14 O -0.62 -22.77 15.43 -4.01 -0.06 -22.83 16 15 N -0.73 -24.46 5.39 -482.29 -2.60 -27.06 16 16 C 0.14 5.27 6.15 85.63 0.53 5.80 16 17 C 0.43 20.12 7.85 87.65 0.69 20.81 16 18 O -0.62 -32.06 15.24 -3.08 -0.05 -32.10 16 19 N -0.56 -28.19 5.29 -306.98 -1.62 -29.82 16 20 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 21 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 22 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 23 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 24 Si 1.00 41.69 29.55 68.60 2.03 43.72 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 1.29 6.35 -2.39 -0.02 1.27 16 34 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 35 H 0.08 1.64 7.37 -2.39 -0.02 1.62 16 36 H 0.13 1.10 8.01 -2.38 -0.02 1.08 16 37 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.12 3.15 7.56 -2.91 -0.02 3.13 16 41 H 0.41 13.66 5.16 -92.72 -0.48 13.18 16 42 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 43 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 45 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -68.77 388.61 3.24 -65.53 By element: Atomic # 1 Polarization: 43.42 SS G_CDS: -0.18 Total: 43.24 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 6.74 Total: 25.95 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -6.02 Total: -120.89 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -0.11 Total: -54.93 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -68.77 3.24 -65.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.904 kcal (2) G-P(sol) polarization free energy of solvation -68.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds