Wall clock time and date at job start Tue Mar 31 2020 19:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47021 * 2 1 4 4 N 1.46499 * 109.47144 * 240.00088 * 2 1 3 5 5 C 1.46500 * 120.00293 * 242.72297 * 4 2 1 6 6 C 1.50701 * 109.47201 * 94.90816 * 5 4 2 7 7 C 1.38262 * 119.98720 * 274.74749 * 6 5 4 8 8 C 1.38228 * 120.04872 * 179.72751 * 7 6 5 9 9 C 1.38214 * 120.02522 * 0.54830 * 8 7 6 10 10 C 1.38444 * 119.97258 * 359.72682 * 9 8 7 11 11 F 1.35103 * 120.02347 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98336 * 95.02592 * 6 5 4 13 13 C 1.34775 * 119.99961 * 62.71780 * 4 2 1 14 14 O 1.21587 * 120.00020 * 174.79860 * 13 4 2 15 15 N 1.34775 * 120.00359 * 354.80603 * 13 4 2 16 16 C 1.46494 * 120.00683 * 184.87208 * 15 13 4 17 17 C 1.50699 * 109.47572 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99765 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00013 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00035 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99857 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00295 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00119 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99813 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47379 * 90.00143 * 24 22 20 26 26 H 1.48499 * 109.47273 * 209.99895 * 24 22 20 27 27 H 1.48500 * 109.47488 * 329.99907 * 24 22 20 28 28 H 1.08997 * 109.47127 * 55.01045 * 1 2 3 29 29 H 1.09000 * 109.47023 * 175.01062 * 1 2 3 30 30 H 1.08996 * 109.47291 * 295.00290 * 1 2 3 31 31 H 1.09002 * 109.46920 * 120.00056 * 2 1 3 32 32 H 1.09003 * 109.46908 * 65.05348 * 3 2 1 33 33 H 1.09000 * 109.47146 * 185.05314 * 3 2 1 34 34 H 1.09001 * 109.47526 * 305.05601 * 3 2 1 35 35 H 1.08993 * 109.47174 * 214.91202 * 5 4 2 36 36 H 1.09002 * 109.46854 * 334.91279 * 5 4 2 37 37 H 1.07999 * 119.97956 * 359.97438 * 7 6 5 38 38 H 1.07998 * 119.98866 * 180.28068 * 8 7 6 39 39 H 1.08006 * 120.01397 * 179.75114 * 9 8 7 40 40 H 1.07997 * 120.01757 * 359.97438 * 12 6 5 41 41 H 0.97005 * 119.99426 * 4.86625 * 15 13 4 42 42 H 1.09004 * 109.46753 * 300.00165 * 16 15 13 43 43 H 1.08999 * 109.47491 * 59.99414 * 16 15 13 44 44 H 0.96999 * 119.99943 * 0.02562 * 19 17 16 45 45 H 0.97005 * 119.99718 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.8107 -1.9156 -1.0627 6 6 1.9050 -3.1146 -1.1767 7 6 1.2399 -3.5869 -0.0604 8 6 0.4045 -4.6832 -0.1648 9 6 0.2419 -5.3155 -1.3831 10 6 0.9119 -4.8468 -2.5003 11 9 0.7534 -5.4637 -3.6918 12 6 1.7442 -3.7450 -2.3957 13 6 1.7386 -0.1990 -2.4195 14 8 2.2217 -0.7169 -3.4078 15 7 0.9234 0.8666 -2.5474 16 6 0.5338 1.3353 -3.8795 17 6 -0.3744 2.5304 -3.7459 18 8 -0.6678 2.9492 -2.6460 19 7 -0.8607 3.1339 -4.8486 20 6 -1.6873 4.2208 -4.7270 21 1 -1.9486 4.5937 -3.7477 22 6 -2.1891 4.8427 -5.8637 23 7 -2.9819 5.8842 -5.7472 24 14 -1.7378 4.1972 -7.5576 25 1 -2.7313 3.1773 -7.9796 26 1 -1.7364 5.3191 -8.5306 27 1 -0.3871 3.5822 -7.5093 28 1 -0.3633 0.5893 -0.8419 29 1 -0.3633 -1.0238 -0.0894 30 1 -0.3633 0.4343 0.9313 31 1 1.8933 -0.5139 0.8900 32 1 1.7524 1.9294 0.9318 33 1 3.1262 1.4438 -0.0905 34 1 1.6046 1.9818 -0.8412 35 1 3.5612 -1.9507 -1.8523 36 1 3.3048 -1.9246 -0.0911 37 1 1.3700 -3.0966 0.8930 38 1 -0.1181 -5.0486 0.7069 39 1 -0.4078 -6.1745 -1.4635 40 1 2.2670 -3.3784 -3.2667 41 1 0.5947 1.3233 -1.7572 42 1 1.4249 1.6166 -4.4407 43 1 0.0094 0.5380 -4.4062 44 1 -0.6264 2.7987 -5.7281 45 1 -3.3319 6.3185 -6.5408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358292454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:54 Heat of formation + Delta-G solvation = -62.488786 kcal Electronic energy + Delta-G solvation = -29510.131733 eV Core-core repulsion = 25250.196498 eV Total energy + Delta-G solvation = -4259.935235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.00526 -40.73006 -39.17892 -38.38373 -36.51727 -34.83382 -33.96709 -32.71342 -31.79202 -30.88340 -30.59150 -28.11315 -27.30690 -26.06784 -24.28255 -23.03183 -22.28806 -21.84128 -20.14376 -19.54070 -18.56689 -17.68166 -17.10037 -16.72423 -16.43309 -16.36780 -15.71902 -15.62565 -15.52239 -15.01286 -14.67983 -14.56780 -14.35638 -14.18205 -13.91132 -13.54031 -13.46326 -13.20465 -13.15630 -12.71357 -12.50693 -12.35022 -12.26848 -12.17002 -12.10321 -11.97293 -11.49287 -11.48612 -11.27966 -11.23259 -10.89796 -10.63891 -10.08974 -10.05532 -9.69931 -9.22398 -9.01055 -8.88216 -8.76639 -8.54176 -8.30480 -6.41154 -3.93612 0.87215 1.00493 2.65419 3.00022 3.04881 3.12886 3.28551 3.42710 3.57242 3.93570 4.03813 4.04947 4.45612 4.50484 4.55858 4.68466 4.81767 4.88730 4.94624 4.98064 5.05603 5.14269 5.21919 5.45300 5.51002 5.56833 5.60910 5.64907 5.70497 5.73425 5.80908 5.83911 5.86745 5.94326 6.04057 6.10352 6.15412 6.25280 6.44023 6.66648 6.69798 7.01374 7.44685 7.99891 8.10162 8.44060 8.72633 8.81340 9.29741 9.63226 10.70981 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.002931 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.842453 B = 9551.743219 C =10679.905799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 C -0.182 4.182 4 N -0.624 5.624 5 C 0.174 3.826 6 C -0.077 4.077 7 C -0.116 4.116 8 C -0.097 4.097 9 C -0.154 4.154 10 C 0.094 3.906 11 F -0.141 7.141 12 C -0.125 4.125 13 C 0.711 3.289 14 O -0.594 6.594 15 N -0.729 5.729 16 C 0.119 3.881 17 C 0.439 3.561 18 O -0.581 6.581 19 N -0.576 5.576 20 C -0.310 4.310 21 H 0.122 0.878 22 C 0.046 3.954 23 N -0.875 5.875 24 Si 0.878 3.122 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.267 1.267 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.414 0.586 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.375 0.625 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.672 -19.458 12.437 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.030 3.970 3 C -0.241 4.241 4 N -0.361 5.361 5 C 0.050 3.950 6 C -0.079 4.079 7 C -0.135 4.135 8 C -0.115 4.115 9 C -0.173 4.173 10 C 0.075 3.925 11 F -0.119 7.119 12 C -0.145 4.145 13 C 0.412 3.588 14 O -0.473 6.473 15 N -0.394 5.394 16 C -0.010 4.010 17 C 0.225 3.775 18 O -0.465 6.465 19 N -0.213 5.213 20 C -0.438 4.438 21 H 0.139 0.861 22 C -0.159 4.159 23 N -0.514 5.514 24 Si 0.704 3.296 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.192 1.192 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.261 0.739 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.208 0.792 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.649 -19.332 12.294 25.264 hybrid contribution -0.139 -0.263 -1.354 1.386 sum 10.511 -19.595 10.941 24.781 Atomic orbital electron populations 1.22515 0.94728 1.03138 1.03747 1.21174 0.94589 0.93453 0.87742 1.22491 1.02060 0.95663 1.03866 1.47273 1.57675 1.26497 1.04607 1.20199 0.91465 0.79796 1.03508 1.20182 0.98586 0.96502 0.92604 1.21087 0.97166 0.96775 0.98466 1.20961 0.98029 0.95563 0.96907 1.21164 1.01663 1.02143 0.92308 1.17764 0.99476 0.94115 0.81193 1.91505 1.94390 1.81826 1.44210 1.21245 0.99260 0.94620 0.99340 1.15802 0.79441 0.80355 0.83174 1.90870 1.56770 1.63141 1.36498 1.45769 1.51385 1.32182 1.10108 1.20841 0.99001 0.96338 0.84801 1.19653 0.85797 0.86634 0.85441 1.90521 1.63141 1.67144 1.25717 1.42113 1.43984 1.28767 1.06451 1.19436 1.22644 1.04513 0.97218 0.86068 1.25058 0.96436 0.95982 0.98392 1.69620 1.31334 1.19940 1.30457 0.86680 0.79151 0.79552 0.84185 1.19387 1.19982 1.19188 0.90587 0.91887 0.90980 0.88967 0.90757 0.91832 0.90651 0.88811 0.89190 0.85518 0.85108 0.84978 0.84004 0.73892 0.89854 0.90066 0.79227 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.05 37.16 0.34 -1.63 16 2 C 0.13 1.28 3.28 -67.93 -0.22 1.06 16 3 C -0.18 -1.89 8.96 37.15 0.33 -1.55 16 4 N -0.62 -7.28 2.42 -173.18 -0.42 -7.69 16 5 C 0.17 1.65 5.53 -5.19 -0.03 1.62 16 6 C -0.08 -0.78 5.42 -104.64 -0.57 -1.35 16 7 C -0.12 -0.95 9.72 -39.58 -0.38 -1.34 16 8 C -0.10 -0.78 10.04 -39.59 -0.40 -1.17 16 9 C -0.15 -1.47 10.03 -39.51 -0.40 -1.86 16 10 C 0.09 1.11 7.30 -39.42 -0.29 0.82 16 11 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 12 C -0.13 -1.50 9.66 -39.52 -0.38 -1.88 16 13 C 0.71 11.15 7.63 -86.92 -0.66 10.49 16 14 O -0.59 -10.81 15.75 5.29 0.08 -10.73 16 15 N -0.73 -12.07 4.13 -66.42 -0.27 -12.34 16 16 C 0.12 2.13 6.16 -5.20 -0.03 2.09 16 17 C 0.44 9.67 7.85 -10.99 -0.09 9.59 16 18 O -0.58 -14.45 15.24 5.55 0.08 -14.37 16 19 N -0.58 -13.41 5.09 -10.97 -0.06 -13.47 16 20 C -0.31 -8.51 10.16 -14.94 -0.15 -8.66 16 21 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 22 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 23 N -0.87 -24.94 13.96 55.50 0.77 -24.16 16 24 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 28 H 0.08 1.07 5.18 -51.93 -0.27 0.80 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.61 7.71 -51.93 -0.40 0.21 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.02 5.16 -51.93 -0.27 0.75 16 35 H 0.09 0.99 7.41 -51.93 -0.38 0.60 16 36 H 0.09 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 40 H 0.14 1.87 7.83 -52.49 -0.41 1.45 16 41 H 0.41 6.76 1.74 -40.82 -0.07 6.69 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 45 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -32.86 375.92 -7.65 -40.51 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -5.80 Total: 16.65 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -3.03 Total: 7.35 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.03 Total: -57.66 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.86 -7.65 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358292454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.983 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds