Wall clock time and date at job start Tue Mar 31 2020 19:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46740 * 95.62278 * 3 2 1 5 5 C 1.36934 * 120.00515 * 94.65089 * 4 3 2 6 6 H 1.08002 * 119.99688 * 37.85345 * 5 4 3 7 7 C 1.38815 * 120.00462 * 218.13407 * 5 4 3 8 8 N 1.31613 * 119.99951 * 211.63745 * 7 5 4 9 9 Si 1.86798 * 119.99774 * 31.63599 * 7 5 4 10 10 H 1.48500 * 109.47281 * 86.06417 * 9 7 5 11 11 H 1.48494 * 109.47134 * 206.06669 * 9 7 5 12 12 H 1.48504 * 109.47250 * 326.06636 * 9 7 5 13 13 C 1.46510 * 119.99959 * 274.64428 * 4 3 2 14 14 C 1.50699 * 109.47185 * 275.23345 * 13 4 3 15 15 O 1.21279 * 120.00001 * 359.97438 * 14 13 4 16 16 N 1.34775 * 119.99752 * 179.97438 * 14 13 4 17 17 C 1.47059 * 120.92426 * 359.72164 * 16 14 13 18 18 C 1.53752 * 108.81429 * 115.69503 * 17 16 14 19 19 C 1.51037 * 108.99270 * 45.92208 * 18 17 16 20 20 N 1.37121 * 126.25314 * 161.89452 * 19 18 17 21 21 H 0.97007 * 125.08479 * 359.52742 * 20 19 18 22 22 C 1.36500 * 109.83714 * 179.54031 * 20 19 18 23 23 C 1.39345 * 132.09069 * 180.12930 * 22 20 19 24 24 C 1.38404 * 116.93077 * 179.97438 * 23 22 20 25 25 C 1.38537 * 122.24523 * 359.97438 * 24 23 22 26 26 C 1.37302 * 122.09759 * 0.02562 * 25 24 23 27 27 C 1.39827 * 116.88264 * 359.97438 * 26 25 24 28 28 C 1.35058 * 124.11084 * 341.59087 * 19 18 17 29 29 C 1.47370 * 120.91961 * 179.97438 * 16 14 13 30 30 H 4.40632 * 5.51406 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47613 * 335.62470 * 3 2 1 32 32 H 1.08999 * 109.46985 * 215.61914 * 3 2 1 33 33 H 0.97007 * 119.99933 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46672 * 35.23283 * 13 4 3 35 35 H 1.08999 * 109.46904 * 155.22898 * 13 4 3 36 36 H 1.09001 * 109.53951 * 235.56557 * 17 16 14 37 37 H 1.09003 * 109.53593 * 355.81151 * 17 16 14 38 38 H 1.08999 * 109.64146 * 286.01442 * 18 17 16 39 39 H 1.09000 * 109.47464 * 165.72555 * 18 17 16 40 40 H 1.07995 * 121.53661 * 359.94460 * 23 22 20 41 41 H 1.07998 * 118.87723 * 179.97438 * 24 23 22 42 42 H 1.08000 * 118.95062 * 180.02562 * 25 24 23 43 43 H 1.07993 * 121.55937 * 180.02562 * 26 25 24 44 44 H 1.08994 * 109.86910 * 343.40353 * 29 16 14 45 45 H 1.09000 * 109.85896 * 104.43088 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.1362 -1.3746 5 6 3.4525 1.3727 -1.8694 6 1 3.9324 2.1017 -1.2333 7 6 3.1532 1.6912 -3.1870 8 7 3.9271 2.5194 -3.8559 9 14 1.6520 0.9444 -4.0105 10 1 0.4584 1.7757 -3.7114 11 1 1.8660 0.8957 -5.4791 12 1 1.4383 -0.4320 -3.4955 13 6 3.2820 -1.0513 -2.2199 14 6 4.6200 -1.6924 -1.9560 15 8 5.3760 -1.2051 -1.1424 16 7 4.9766 -2.8072 -2.6242 17 6 4.0733 -3.4185 -3.6107 18 6 4.7287 -3.3391 -4.9992 19 6 6.1716 -3.7711 -4.8872 20 7 6.9820 -4.1672 -5.9199 21 1 6.7132 -4.2211 -6.8505 22 6 8.2234 -4.4747 -5.4429 23 6 9.3840 -4.9165 -6.0751 24 6 10.4901 -5.1359 -5.2727 25 6 10.4622 -4.9304 -3.9030 26 6 9.3334 -4.4957 -3.2533 27 6 8.2003 -4.2658 -4.0397 28 6 6.8608 -3.8161 -3.7265 29 6 6.2802 -3.4506 -2.3826 30 1 -1.0500 0.0002 0.0001 31 1 3.0098 -0.9351 0.4241 32 1 3.0089 0.8362 0.5985 33 1 3.7181 2.7417 -4.7767 34 1 2.4873 -1.7614 -1.9909 35 1 3.2187 -0.7609 -3.2686 36 1 3.8978 -4.4615 -3.3471 37 1 3.1260 -2.8794 -3.6207 38 1 4.6823 -2.3145 -5.3682 39 1 4.2025 -4.0002 -5.6878 40 1 9.4186 -5.0805 -7.1419 41 1 11.4063 -5.4791 -5.7301 42 1 11.3569 -5.1181 -3.3278 43 1 9.3215 -4.3380 -2.1850 44 1 6.9456 -2.7575 -1.8679 45 1 6.1437 -4.3495 -1.7814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374074994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:34 Heat of formation + Delta-G solvation = 118.987339 kcal Electronic energy + Delta-G solvation = -28730.669227 eV Core-core repulsion = 24909.372612 eV Total energy + Delta-G solvation = -3821.296615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56055 -39.28429 -37.25567 -36.09034 -35.37797 -32.61837 -32.43831 -31.43040 -31.32536 -29.76265 -28.80620 -27.64028 -26.27069 -24.99332 -24.00616 -22.09686 -21.85657 -21.39771 -19.77707 -18.42771 -17.81398 -17.45011 -16.98961 -16.81995 -15.99956 -15.56180 -15.38591 -15.04136 -14.87317 -14.44980 -14.10632 -14.04543 -13.87521 -13.75028 -13.51185 -13.25054 -12.86079 -12.71252 -12.65100 -12.39176 -12.23098 -11.86744 -11.74125 -11.61267 -11.32175 -11.24078 -11.08704 -11.02217 -10.73618 -10.40644 -9.81105 -9.65725 -9.58548 -9.37716 -9.14455 -8.50769 -8.36590 -8.12118 -7.56506 -7.04013 -6.14424 -3.47791 1.02094 1.60189 2.59420 2.98090 3.20911 3.24100 3.36698 3.41338 3.46107 3.53282 3.57166 3.86288 4.42893 4.52603 4.63447 4.81593 4.89885 4.93786 5.02092 5.07730 5.13502 5.21423 5.23194 5.34993 5.39371 5.43082 5.56568 5.63095 5.68089 5.74998 5.85436 5.90805 5.97193 6.01778 6.14796 6.21173 6.27226 6.38327 6.54763 6.56124 6.64295 6.69302 6.77116 6.87577 7.11910 7.45636 7.77822 7.95075 8.28843 8.36867 8.78117 8.97039 9.58405 9.96821 11.00535 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003241 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.786574 B = 8636.397922 C = 9111.296091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.166 4.166 3 C 0.242 3.758 4 N -0.568 5.568 5 C -0.273 4.273 6 H 0.082 0.918 7 C 0.046 3.954 8 N -0.874 5.874 9 Si 0.847 3.153 10 H -0.284 1.284 11 H -0.294 1.294 12 H -0.262 1.262 13 C 0.132 3.868 14 C 0.493 3.507 15 O -0.516 6.516 16 N -0.628 5.628 17 C 0.118 3.882 18 C -0.079 4.079 19 C 0.083 3.917 20 N -0.586 5.586 21 H 0.413 0.587 22 C 0.098 3.902 23 C -0.134 4.134 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.064 4.064 27 C -0.094 4.094 28 C -0.178 4.178 29 C 0.189 3.811 30 H 0.204 0.796 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.097 0.903 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -18.715 -4.301 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.169 4.169 3 C 0.116 3.884 4 N -0.286 5.286 5 C -0.401 4.401 6 H 0.099 0.901 7 C -0.157 4.157 8 N -0.513 5.513 9 Si 0.673 3.327 10 H -0.211 1.211 11 H -0.221 1.221 12 H -0.187 1.187 13 C 0.002 3.998 14 C 0.280 3.720 15 O -0.389 6.389 16 N -0.365 5.365 17 C -0.006 4.006 18 C -0.118 4.118 19 C -0.025 4.025 20 N -0.188 5.188 21 H 0.250 0.750 22 C -0.010 4.010 23 C -0.155 4.155 24 C -0.123 4.123 25 C -0.172 4.172 26 C -0.083 4.083 27 C -0.099 4.099 28 C -0.185 4.185 29 C 0.066 3.934 30 H 0.221 0.779 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.148 0.852 44 H 0.115 0.885 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.166 -18.237 -4.088 19.390 hybrid contribution -1.181 -0.310 -1.514 1.945 sum 3.985 -18.546 -5.602 19.779 Atomic orbital electron populations 1.24704 0.95767 1.04298 1.03125 1.25238 0.96213 0.97450 0.97976 1.18194 0.81267 1.00966 0.87947 1.43668 1.72304 1.02427 1.10190 1.18725 1.34094 0.90677 0.96570 0.90059 1.25509 0.97207 0.96302 0.96647 1.70047 1.34584 1.36877 1.09748 0.87473 0.87058 0.80423 0.77703 1.21064 1.22053 1.18687 1.21430 0.91115 0.89653 0.97583 1.22898 0.91241 0.77959 0.79916 1.90610 1.53407 1.60881 1.34015 1.48583 1.17380 1.28222 1.42351 1.21649 0.93352 0.99220 0.86392 1.20887 0.88849 1.02709 0.99323 1.20336 0.93567 1.01826 0.86801 1.41426 1.09247 1.58789 1.09331 0.74983 1.18380 0.86478 1.02811 0.93324 1.20348 0.90911 1.05201 0.98997 1.20766 0.97432 1.00444 0.93664 1.20621 0.98359 1.03743 0.94523 1.20665 0.91159 0.97330 0.99114 1.18815 0.93886 1.05185 0.92000 1.20237 0.92938 1.10239 0.95099 1.19770 0.84797 0.97096 0.91737 0.77929 0.91533 0.89696 0.92573 0.91572 0.89468 0.90753 0.88696 0.89135 0.89594 0.85750 0.86414 0.86558 0.85216 0.88532 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.68 19.25 29.55 0.57 -4.11 16 2 C -0.17 -3.32 13.67 -37.12 -0.51 -3.82 16 3 C 0.24 4.99 6.15 -6.83 -0.04 4.95 16 4 N -0.57 -13.53 1.49 -177.95 -0.27 -13.80 16 5 C -0.27 -7.61 9.78 -15.06 -0.15 -7.76 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 7 C 0.05 1.29 5.04 -17.43 -0.09 1.20 16 8 N -0.87 -26.14 13.97 55.49 0.78 -25.36 16 9 Si 0.85 20.50 26.50 -169.99 -4.50 16.00 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -5.75 5.49 56.52 0.31 -5.44 16 13 C 0.13 2.77 2.68 -5.19 -0.01 2.76 16 14 C 0.49 10.10 7.77 -10.99 -0.09 10.01 16 15 O -0.52 -12.47 15.94 5.56 0.09 -12.38 16 16 N -0.63 -10.24 2.94 -173.32 -0.51 -10.75 16 17 C 0.12 1.46 6.32 -3.35 -0.02 1.44 16 18 C -0.08 -0.91 6.46 -27.33 -0.18 -1.08 16 19 C 0.08 1.09 7.03 -81.19 -0.57 0.52 16 20 N -0.59 -6.76 6.04 -6.52 -0.04 -6.80 16 21 H 0.41 3.45 8.96 -40.82 -0.37 3.08 16 22 C 0.10 1.26 7.19 -83.98 -0.60 0.66 16 23 C -0.13 -1.44 10.29 -39.11 -0.40 -1.84 16 24 C -0.10 -1.06 9.93 -39.41 -0.39 -1.45 16 25 C -0.15 -1.66 9.89 -39.81 -0.39 -2.06 16 26 C -0.06 -0.80 10.26 -39.33 -0.40 -1.20 16 27 C -0.09 -1.33 6.27 -105.35 -0.66 -1.99 16 28 C -0.18 -2.62 6.22 -103.10 -0.64 -3.26 16 29 C 0.19 2.89 6.73 -4.62 -0.03 2.86 16 30 H 0.20 2.84 7.80 -54.09 -0.42 2.42 16 31 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 32 H 0.09 1.74 8.00 -51.93 -0.42 1.33 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 35 H 0.09 1.91 4.27 -51.93 -0.22 1.69 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.15 5.96 -51.93 -0.31 0.84 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.10 1.68 7.20 -51.93 -0.37 1.30 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -35.14 376.66 -9.35 -44.49 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.96 Total: 7.10 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -4.61 Total: -4.18 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.04 Total: -56.70 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.50 Total: 16.00 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.14 -9.35 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374074994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.480 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds