Wall clock time and date at job start Tue Mar 31 2020 19:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46740 * 95.62278 * 3 2 1 5 5 C 1.36934 * 120.00515 * 94.65089 * 4 3 2 6 6 H 1.08002 * 119.99688 * 37.85345 * 5 4 3 7 7 C 1.38815 * 120.00462 * 218.13407 * 5 4 3 8 8 N 1.31613 * 119.99951 * 211.63745 * 7 5 4 9 9 Si 1.86798 * 119.99774 * 31.63599 * 7 5 4 10 10 H 1.48500 * 109.47281 * 86.06417 * 9 7 5 11 11 H 1.48494 * 109.47134 * 206.06669 * 9 7 5 12 12 H 1.48504 * 109.47250 * 326.06636 * 9 7 5 13 13 C 1.46510 * 119.99959 * 274.64428 * 4 3 2 14 14 C 1.50699 * 109.47185 * 275.23345 * 13 4 3 15 15 O 1.21279 * 120.00001 * 359.97438 * 14 13 4 16 16 N 1.34775 * 119.99752 * 179.97438 * 14 13 4 17 17 C 1.47059 * 120.92426 * 359.72164 * 16 14 13 18 18 C 1.53752 * 108.81429 * 115.69503 * 17 16 14 19 19 C 1.51037 * 108.99270 * 45.92208 * 18 17 16 20 20 N 1.37121 * 126.25314 * 161.89452 * 19 18 17 21 21 H 0.97007 * 125.08479 * 359.52742 * 20 19 18 22 22 C 1.36500 * 109.83714 * 179.54031 * 20 19 18 23 23 C 1.39345 * 132.09069 * 180.12930 * 22 20 19 24 24 C 1.38404 * 116.93077 * 179.97438 * 23 22 20 25 25 C 1.38537 * 122.24523 * 359.97438 * 24 23 22 26 26 C 1.37302 * 122.09759 * 0.02562 * 25 24 23 27 27 C 1.39827 * 116.88264 * 359.97438 * 26 25 24 28 28 C 1.35058 * 124.11084 * 341.59087 * 19 18 17 29 29 C 1.47370 * 120.91961 * 179.97438 * 16 14 13 30 30 H 4.40632 * 5.51406 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47613 * 335.62470 * 3 2 1 32 32 H 1.08999 * 109.46985 * 215.61914 * 3 2 1 33 33 H 0.97007 * 119.99933 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46672 * 35.23283 * 13 4 3 35 35 H 1.08999 * 109.46904 * 155.22898 * 13 4 3 36 36 H 1.09001 * 109.53951 * 235.56557 * 17 16 14 37 37 H 1.09003 * 109.53593 * 355.81151 * 17 16 14 38 38 H 1.08999 * 109.64146 * 286.01442 * 18 17 16 39 39 H 1.09000 * 109.47464 * 165.72555 * 18 17 16 40 40 H 1.07995 * 121.53661 * 359.94460 * 23 22 20 41 41 H 1.07998 * 118.87723 * 179.97438 * 24 23 22 42 42 H 1.08000 * 118.95062 * 180.02562 * 25 24 23 43 43 H 1.07993 * 121.55937 * 180.02562 * 26 25 24 44 44 H 1.08994 * 109.86910 * 343.40353 * 29 16 14 45 45 H 1.09000 * 109.85896 * 104.43088 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.1362 -1.3746 5 6 3.4525 1.3727 -1.8694 6 1 3.9324 2.1017 -1.2333 7 6 3.1532 1.6912 -3.1870 8 7 3.9271 2.5194 -3.8559 9 14 1.6520 0.9444 -4.0105 10 1 0.4584 1.7757 -3.7114 11 1 1.8660 0.8957 -5.4791 12 1 1.4383 -0.4320 -3.4955 13 6 3.2820 -1.0513 -2.2199 14 6 4.6200 -1.6924 -1.9560 15 8 5.3760 -1.2051 -1.1424 16 7 4.9766 -2.8072 -2.6242 17 6 4.0733 -3.4185 -3.6107 18 6 4.7287 -3.3391 -4.9992 19 6 6.1716 -3.7711 -4.8872 20 7 6.9820 -4.1672 -5.9199 21 1 6.7132 -4.2211 -6.8505 22 6 8.2234 -4.4747 -5.4429 23 6 9.3840 -4.9165 -6.0751 24 6 10.4901 -5.1359 -5.2727 25 6 10.4622 -4.9304 -3.9030 26 6 9.3334 -4.4957 -3.2533 27 6 8.2003 -4.2658 -4.0397 28 6 6.8608 -3.8161 -3.7265 29 6 6.2802 -3.4506 -2.3826 30 1 -1.0500 0.0002 0.0001 31 1 3.0098 -0.9351 0.4241 32 1 3.0089 0.8362 0.5985 33 1 3.7181 2.7417 -4.7767 34 1 2.4873 -1.7614 -1.9909 35 1 3.2187 -0.7609 -3.2686 36 1 3.8978 -4.4615 -3.3471 37 1 3.1260 -2.8794 -3.6207 38 1 4.6823 -2.3145 -5.3682 39 1 4.2025 -4.0002 -5.6878 40 1 9.4186 -5.0805 -7.1419 41 1 11.4063 -5.4791 -5.7301 42 1 11.3569 -5.1181 -3.3278 43 1 9.3215 -4.3380 -2.1850 44 1 6.9456 -2.7575 -1.8679 45 1 6.1437 -4.3495 -1.7814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374074994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:33 Heat of formation + Delta-G solvation = 97.680208 kcal Electronic energy + Delta-G solvation = -28731.593174 eV Core-core repulsion = 24909.372612 eV Total energy + Delta-G solvation = -3822.220561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.51397 -40.74404 -38.35162 -37.58839 -36.77717 -34.38338 -33.55380 -33.05820 -32.51551 -30.87611 -29.83460 -28.99318 -28.08987 -26.27136 -25.03938 -23.71892 -22.94914 -22.35275 -21.13755 -19.59770 -19.03859 -18.95321 -18.49933 -18.17287 -17.26877 -16.81884 -16.76899 -16.53242 -15.92424 -15.80119 -15.59545 -15.20482 -15.05561 -14.89729 -14.80873 -14.65802 -14.39085 -14.12261 -14.00906 -13.70902 -13.41450 -13.39225 -12.92611 -12.83465 -12.69198 -12.55113 -12.32659 -12.18756 -12.16429 -11.91196 -11.61438 -11.27435 -10.94709 -10.85963 -10.53544 -10.49356 -9.68585 -9.03459 -8.96037 -8.51455 -8.28637 -5.62036 0.12412 0.70966 1.30047 1.44571 1.51018 1.59691 1.76871 1.88822 2.06594 2.10031 2.19658 2.39823 2.94384 2.96659 3.48698 3.59732 3.67128 3.78598 3.87108 3.94906 4.09689 4.21307 4.26720 4.32406 4.38371 4.39983 4.49186 4.51219 4.58914 4.62659 4.64713 4.69608 4.74508 4.82049 4.91882 4.98545 5.06580 5.19152 5.28574 5.47069 5.62137 5.69220 5.74335 5.82685 5.86123 6.14111 6.21618 6.45426 6.65725 6.83048 6.91451 7.34306 7.53813 7.93518 8.91349 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003241 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.786574 B = 8636.397922 C = 9111.296091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.217 4.217 3 C 0.245 3.755 4 N -0.581 5.581 5 C -0.276 4.276 6 H 0.029 0.971 7 C -0.007 4.007 8 N -0.930 5.930 9 Si 0.920 3.080 10 H -0.293 1.293 11 H -0.287 1.287 12 H -0.222 1.222 13 C 0.132 3.868 14 C 0.490 3.510 15 O -0.570 6.570 16 N -0.620 5.620 17 C 0.108 3.892 18 C -0.075 4.075 19 C 0.083 3.917 20 N -0.576 5.576 21 H 0.429 0.571 22 C 0.081 3.919 23 C -0.133 4.133 24 C -0.107 4.107 25 C -0.153 4.153 26 C -0.089 4.089 27 C -0.124 4.124 28 C -0.212 4.212 29 C 0.195 3.805 30 H 0.245 0.755 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.266 0.734 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.062 0.938 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -22.155 -6.434 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.219 4.219 3 C 0.120 3.880 4 N -0.300 5.300 5 C -0.405 4.405 6 H 0.046 0.954 7 C -0.206 4.206 8 N -0.571 5.571 9 Si 0.744 3.256 10 H -0.220 1.220 11 H -0.213 1.213 12 H -0.145 1.145 13 C 0.003 3.997 14 C 0.277 3.723 15 O -0.447 6.447 16 N -0.355 5.355 17 C -0.014 4.014 18 C -0.114 4.114 19 C -0.026 4.026 20 N -0.179 5.179 21 H 0.269 0.731 22 C -0.027 4.027 23 C -0.153 4.153 24 C -0.126 4.126 25 C -0.172 4.172 26 C -0.107 4.107 27 C -0.129 4.129 28 C -0.220 4.220 29 C 0.072 3.928 30 H 0.262 0.738 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.081 0.919 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.130 -21.762 -6.254 22.859 hybrid contribution -0.419 0.718 -0.781 1.141 sum 2.712 -21.044 -7.035 22.354 Atomic orbital electron populations 1.25594 0.96553 1.01554 1.00102 1.24983 0.96338 1.00003 1.00593 1.18011 0.82661 1.01067 0.86221 1.43656 1.73225 1.01793 1.11332 1.18482 1.33725 0.91920 0.96366 0.95371 1.26128 0.99638 0.97570 0.97254 1.70172 1.36562 1.39969 1.10361 0.86294 0.81162 0.81392 0.76733 1.22038 1.21333 1.14463 1.21508 0.92370 0.89265 0.96574 1.22753 0.90866 0.78820 0.79854 1.90591 1.54660 1.62828 1.36628 1.48517 1.18180 1.26898 1.41953 1.22056 0.92754 1.00823 0.85778 1.20942 0.88154 1.02770 0.99537 1.20579 0.94383 1.00879 0.86753 1.41373 1.08651 1.57999 1.09828 0.73140 1.18681 0.87520 1.03481 0.93009 1.20771 0.90081 1.03959 1.00502 1.21190 0.98536 0.99487 0.93389 1.20960 0.98448 1.02490 0.95343 1.20867 0.91758 0.98630 0.99494 1.19124 0.94161 1.06269 0.93318 1.20254 0.94004 1.12513 0.95181 1.19677 0.83803 0.96632 0.92685 0.73840 0.90136 0.91345 0.92511 0.87959 0.90201 0.87468 0.87787 0.90699 0.85246 0.82902 0.83363 0.84421 0.85163 0.91937 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.07 19.25 74.32 1.43 -5.64 16 2 C -0.22 -8.30 13.67 31.13 0.43 -7.88 16 3 C 0.24 10.33 6.15 84.57 0.52 10.85 16 4 N -0.58 -28.20 1.49 -716.89 -1.07 -29.26 16 5 C -0.28 -16.17 9.78 84.03 0.82 -15.35 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 7 C -0.01 -0.42 5.04 84.86 0.43 0.00 16 8 N -0.93 -57.98 13.97 21.65 0.30 -57.68 16 9 Si 0.92 42.16 26.50 68.60 1.82 43.98 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.22 -8.62 5.49 99.48 0.55 -8.07 16 13 C 0.13 5.40 2.68 85.63 0.23 5.63 16 14 C 0.49 20.40 7.77 87.66 0.68 21.08 16 15 O -0.57 -29.11 15.94 -3.03 -0.05 -29.16 16 16 N -0.62 -19.96 2.94 -820.67 -2.41 -22.38 16 17 C 0.11 2.37 6.32 86.53 0.55 2.91 16 18 C -0.08 -1.52 6.46 30.21 0.20 -1.33 16 19 C 0.08 2.08 7.03 41.11 0.29 2.37 16 20 N -0.58 -12.17 6.04 -174.55 -1.05 -13.22 16 21 H 0.43 5.99 8.96 -92.70 -0.83 5.16 16 22 C 0.08 1.98 7.19 39.59 0.28 2.26 16 23 C -0.13 -2.53 10.29 22.58 0.23 -2.29 16 24 C -0.11 -1.93 9.93 22.38 0.22 -1.71 16 25 C -0.15 -3.15 9.89 22.12 0.22 -2.93 16 26 C -0.09 -2.26 10.26 22.43 0.23 -2.03 16 27 C -0.12 -3.53 6.27 -20.33 -0.13 -3.66 16 28 C -0.21 -6.28 6.22 -18.88 -0.12 -6.39 16 29 C 0.20 6.14 6.73 85.53 0.58 6.71 16 30 H 0.25 5.44 7.80 -4.42 -0.03 5.40 16 31 H 0.08 3.08 8.11 -2.39 -0.02 3.06 16 32 H 0.07 3.01 8.00 -2.39 -0.02 2.99 16 33 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 34 H 0.10 3.41 7.69 -2.39 -0.02 3.39 16 35 H 0.08 3.37 4.27 -2.39 -0.01 3.36 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 2.10 5.96 -2.39 -0.01 2.09 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 44 H 0.06 2.37 7.20 -2.39 -0.02 2.35 16 45 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -82.61 376.66 4.65 -77.96 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.03 Total: 27.14 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 7.09 Total: 2.63 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -4.23 Total: -122.55 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.05 Total: -29.16 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.82 Total: 43.98 kcal Total: -82.61 4.65 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374074994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.637 kcal (2) G-P(sol) polarization free energy of solvation -82.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds