Wall clock time and date at job start Tue Mar 31 2020 19:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46967 * 269.03984 * 3 2 1 5 5 C 1.37090 * 120.00000 * 263.92742 * 4 3 2 6 6 H 1.08004 * 120.00214 * 199.75863 * 5 4 3 7 7 C 1.38949 * 120.00124 * 19.75713 * 5 4 3 8 8 N 1.31410 * 120.00103 * 21.75170 * 7 5 4 9 9 Si 1.86803 * 120.00012 * 201.74445 * 7 5 4 10 10 H 1.48499 * 109.47305 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46904 * 120.00413 * 9 7 5 12 12 H 1.48499 * 109.46988 * 240.00096 * 9 7 5 13 13 C 1.34781 * 119.99660 * 83.92845 * 4 3 2 14 14 O 1.21295 * 119.99717 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00188 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.46998 * 179.97438 * 15 13 4 17 17 N 1.46496 * 109.47041 * 180.02562 * 16 15 13 18 18 C 1.38049 * 126.35313 * 90.02566 * 17 16 15 19 19 C 1.38834 * 134.13572 * 359.69129 * 18 17 16 20 20 C 1.37857 * 119.69195 * 179.88276 * 19 18 17 21 21 C 1.38781 * 120.44412 * 0.43951 * 20 19 18 22 22 C 1.36595 * 120.67231 * 359.77678 * 21 20 19 23 23 C 1.39736 * 119.88854 * 0.02562 * 22 21 20 24 24 N 1.35785 * 133.60689 * 179.97438 * 23 22 21 25 25 C 1.30108 * 109.64694 * 180.02562 * 24 23 22 26 26 C 1.50699 * 124.95205 * 180.02562 * 25 24 23 27 27 C 1.53004 * 117.49963 * 8.59773 * 26 25 24 28 28 C 1.53005 * 60.00037 * 252.51084 * 27 26 25 29 29 H 4.40643 * 5.51350 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46671 * 149.04205 * 3 2 1 31 31 H 1.09004 * 109.46920 * 29.04115 * 3 2 1 32 32 H 0.96997 * 120.00438 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.46822 * 59.99857 * 15 13 4 34 34 H 1.08993 * 109.47080 * 299.99826 * 15 13 4 35 35 H 1.08998 * 109.46649 * 60.00101 * 16 15 13 36 36 H 1.09000 * 109.46983 * 300.00207 * 16 15 13 37 37 H 1.08003 * 120.15719 * 0.31690 * 19 18 17 38 38 H 1.07994 * 119.77991 * 180.22079 * 20 19 18 39 39 H 1.07998 * 119.66034 * 179.80073 * 21 20 19 40 40 H 1.08006 * 120.05801 * 179.97438 * 22 21 20 41 41 H 1.09000 * 115.55250 * 154.29874 * 26 25 24 42 42 H 1.09005 * 117.49707 * 359.97438 * 27 26 25 43 43 H 1.08998 * 117.49969 * 145.02153 * 27 26 25 44 44 H 1.09001 * 117.49853 * 252.51125 * 28 27 26 45 45 H 1.08996 * 117.51786 * 107.47601 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.0240 1.3810 5 6 3.4807 1.2147 1.9656 6 1 4.1240 1.2235 2.8331 7 6 3.0042 2.4103 1.4419 8 7 1.9231 2.4159 0.6948 9 14 3.9002 4.0098 1.8001 10 1 5.0801 3.7347 2.6588 11 1 4.3492 4.6221 0.5240 12 1 2.9838 4.9441 2.5019 13 6 3.2431 -1.1252 2.0769 14 8 3.6478 -1.1059 3.2201 15 6 2.8618 -2.4340 1.4345 16 6 3.0784 -3.5738 2.4318 17 7 2.7084 -4.8462 1.8072 18 6 3.5441 -5.6802 1.0917 19 6 4.8845 -5.6301 0.7336 20 6 5.4327 -6.6565 -0.0055 21 6 4.6516 -7.7334 -0.4009 22 6 3.3300 -7.7974 -0.0615 23 6 2.7537 -6.7705 0.6908 24 7 1.5033 -6.5504 1.1721 25 6 1.4773 -5.4247 1.8240 26 6 0.2611 -4.8471 2.5010 27 6 -0.9845 -5.7310 2.5903 28 6 -0.9569 -4.5432 1.6263 29 1 -1.0500 -0.0002 0.0000 30 1 3.0089 0.8821 -0.5286 31 1 3.0098 -0.8977 -0.4989 32 1 1.5907 3.2504 0.3290 33 1 3.4813 -2.6001 0.5531 34 1 1.8127 -2.4024 1.1405 35 1 2.4593 -3.4078 3.3134 36 1 4.1277 -3.6052 2.7254 37 1 5.4968 -4.7943 1.0387 38 1 6.4761 -6.6208 -0.2818 39 1 5.0933 -8.5291 -0.9824 40 1 2.7312 -8.6399 -0.3748 41 1 0.4622 -4.1746 3.3349 42 1 -0.9245 -6.7303 2.1590 43 1 -1.6031 -5.6403 3.4832 44 1 -1.5573 -3.6710 1.8849 45 1 -0.8784 -4.7608 0.5611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490960504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:12 Heat of formation + Delta-G solvation = 132.178431 kcal Electronic energy + Delta-G solvation = -28642.194745 eV Core-core repulsion = 24821.470139 eV Total energy + Delta-G solvation = -3820.724606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16900 -38.87767 -37.85755 -36.50966 -35.47343 -34.47897 -32.28744 -31.34326 -31.06439 -29.46636 -29.22486 -26.58183 -25.38191 -24.55496 -23.57582 -22.48454 -22.01040 -21.28303 -19.52060 -19.04685 -17.97240 -17.50594 -17.25780 -16.66423 -15.94664 -15.80727 -15.48388 -15.00245 -14.85679 -14.62985 -14.20230 -14.15368 -13.93788 -13.81015 -13.43583 -12.85809 -12.43165 -12.38423 -12.16623 -12.02781 -11.95344 -11.82008 -11.68631 -11.54150 -11.40386 -11.10643 -11.01916 -10.60073 -10.57591 -10.54271 -10.41271 -10.26878 -9.85326 -9.46160 -9.36113 -9.01719 -8.62307 -8.19706 -8.00526 -7.97706 -6.43855 -3.98507 0.97482 1.56343 2.61868 2.71190 3.05729 3.19564 3.25638 3.54405 3.77990 3.79765 3.95361 3.96557 4.06600 4.10649 4.38115 4.71550 4.80631 4.87436 4.88375 4.94301 4.97682 5.02383 5.10199 5.16920 5.36427 5.42309 5.45629 5.52332 5.59426 5.61630 5.67086 5.75940 5.81627 5.90421 5.98269 6.09199 6.12541 6.20490 6.23155 6.52120 6.54398 6.59280 6.60398 6.91519 6.92492 7.19808 7.46159 7.91777 7.96979 8.28681 8.72319 8.99878 9.22166 9.74825 10.56444 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.003362 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.831711 B = 8327.067002 C = 9431.310922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.117 4.117 3 C 0.232 3.768 4 N -0.433 5.433 5 C -0.320 4.320 6 H 0.105 0.895 7 C 0.034 3.966 8 N -0.857 5.857 9 Si 0.920 3.080 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.453 3.547 14 O -0.586 6.586 15 C -0.147 4.147 16 C 0.130 3.870 17 N -0.479 5.479 18 C 0.048 3.952 19 C -0.104 4.104 20 C -0.110 4.110 21 C -0.131 4.131 22 C -0.069 4.069 23 C 0.048 3.952 24 N -0.499 5.499 25 C 0.322 3.678 26 C -0.102 4.102 27 C -0.148 4.148 28 C -0.151 4.151 29 H 0.199 0.801 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 -14.692 -3.252 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.118 4.118 3 C 0.108 3.892 4 N -0.150 5.150 5 C -0.447 4.447 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.494 5.494 9 Si 0.746 3.254 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.240 3.760 14 O -0.471 6.471 15 C -0.188 4.188 16 C 0.008 3.992 17 N -0.167 5.167 18 C -0.061 4.061 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.089 4.089 23 C -0.071 4.071 24 N -0.219 5.219 25 C 0.057 3.943 26 C -0.122 4.122 27 C -0.185 4.185 28 C -0.190 4.190 29 H 0.217 0.783 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.195 -14.926 -2.846 15.242 hybrid contribution 0.723 1.747 0.115 1.894 sum -0.473 -13.179 -2.732 13.468 Atomic orbital electron populations 1.24261 0.95342 1.05993 1.01677 1.23070 0.94268 0.95786 0.98723 1.18223 0.84489 1.01312 0.85150 1.43670 1.55313 1.06012 1.10038 1.19685 1.28564 0.81412 1.15009 0.87731 1.25322 0.94909 0.99584 0.97275 1.70092 1.17733 1.27940 1.33596 0.85975 0.79795 0.81308 0.78319 1.19134 1.20532 1.20796 1.19702 0.84952 0.84794 0.86505 1.90539 1.51654 1.86880 1.18041 1.21894 1.03698 0.93939 0.99256 1.21578 1.03457 0.78565 0.95570 1.45416 1.08472 1.18993 1.43813 1.18911 0.93883 0.93392 0.99964 1.20044 0.91239 1.00287 1.00920 1.20835 0.99767 0.93676 0.98669 1.20583 0.93550 0.99025 1.01981 1.19933 0.94675 0.96898 0.97398 1.19051 0.89918 0.95899 1.02269 1.70310 1.20200 1.15226 1.16190 1.22450 0.85784 0.89507 0.96529 1.20335 0.84918 1.04749 1.02237 1.22996 0.96991 0.96847 1.01698 1.23047 0.97892 1.00127 0.97898 0.78346 0.87511 0.92042 0.92064 0.90011 0.89347 0.88205 0.88490 0.85912 0.85489 0.85689 0.85745 0.85586 0.87273 0.88036 0.87635 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.03 19.25 29.55 0.57 -4.46 16 2 C -0.12 -2.51 10.75 -37.12 -0.40 -2.91 16 3 C 0.23 4.90 4.91 -6.83 -0.03 4.87 16 4 N -0.43 -10.35 2.60 -117.93 -0.31 -10.65 16 5 C -0.32 -8.41 9.28 -14.94 -0.14 -8.55 16 6 H 0.11 2.90 7.42 -52.48 -0.39 2.52 16 7 C 0.03 0.86 4.83 -17.47 -0.08 0.78 16 8 N -0.86 -21.70 9.59 55.50 0.53 -21.17 16 9 Si 0.92 19.73 29.61 -169.99 -5.03 14.70 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.45 10.18 7.56 -10.98 -0.08 10.10 16 14 O -0.59 -14.91 15.65 5.54 0.09 -14.82 16 15 C -0.15 -2.56 4.63 -27.88 -0.13 -2.69 16 16 C 0.13 2.05 5.22 -4.04 -0.02 2.03 16 17 N -0.48 -7.40 2.80 -111.16 -0.31 -7.71 16 18 C 0.05 0.74 6.87 -83.99 -0.58 0.16 16 19 C -0.10 -1.38 10.05 -39.50 -0.40 -1.77 16 20 C -0.11 -1.22 10.03 -39.52 -0.40 -1.61 16 21 C -0.13 -1.41 9.96 -39.97 -0.40 -1.81 16 22 C -0.07 -0.89 10.05 -39.62 -0.40 -1.29 16 23 C 0.05 0.74 7.23 -84.70 -0.61 0.13 16 24 N -0.50 -8.03 10.76 -8.24 -0.09 -8.12 16 25 C 0.32 4.90 7.42 -154.82 -1.15 3.75 16 26 C -0.10 -1.30 5.89 -91.77 -0.54 -1.84 16 27 C -0.15 -1.55 10.12 -26.73 -0.27 -1.82 16 28 C -0.15 -1.71 10.23 -26.73 -0.27 -1.98 16 29 H 0.20 3.19 7.80 -54.09 -0.42 2.77 16 30 H 0.11 2.39 6.60 -51.93 -0.34 2.04 16 31 H 0.06 1.10 6.70 -51.93 -0.35 0.75 16 32 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 34 H 0.09 1.56 7.49 -51.93 -0.39 1.17 16 35 H 0.10 1.57 7.12 -51.93 -0.37 1.20 16 36 H 0.10 1.53 8.10 -51.93 -0.42 1.11 16 37 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.13 1.52 7.29 -51.93 -0.38 1.15 16 42 H 0.11 1.23 7.85 -51.93 -0.41 0.82 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -31.07 385.38 -10.59 -41.66 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.95 Total: 9.21 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -5.33 Total: -8.91 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.17 Total: -47.65 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.09 Total: -14.82 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.07 -10.59 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.836 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds